Guide to the Human Genome
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Name: HTR3E Sequence: fasta or formatted (471aa) NCBI GI: 47519913
Description:

5-hydroxytryptamine receptor 3 subunit E

Referenced in:

Serotonin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         28           2
 C cysteine            1.9          9           2
 D aspartate           3.4         16           1
 E glutamate           4.9         23           2
 F phenylalanine       5.1         24           1
 G glycine             5.7         27           2
 H histidine           3.0         14           1
 I isoleucine          5.5         26           2
 K lysine              3.6         17           2
 L leucine            13.8         65           3
 M methionine          3.6         17           2
 N asparagine          4.2         20           1
 P proline             6.8         32           3
 Q glutamine           3.0         14           2
 R arginine            4.2         20           3
 S serine              7.9         37           2
 T threonine           6.8         32           2
 V valine              5.9         28           1
 W tryptophan          2.1         10           1
 Y tyrosine            2.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   5-hydroxytryptamine receptor 3 subunit E 
HTR3C                 0.712   5-hydroxytryptamine receptor 3 subunit C 
HTR3D                 0.451   5-hydroxytryptamine receptor 3 subunit D isoform 1 ...
HTR3D                 0.376   5-hydroxytryptamine receptor 3 subunit D isoform 2 [...
HTR3A                 0.287   5-hydroxytryptamine (serotonin) receptor 3A isoform...
HTR3A                 0.287   5-hydroxytryptamine (serotonin) receptor 3A isoform...
HTR3A                 0.269   5-hydroxytryptamine (serotonin) receptor 3A isoform...
HTR3B                 0.198   5-hydroxytryptamine (serotonin) receptor 3B precursor...
CHRNA9                0.154   cholinergic receptor, nicotinic, alpha 9 precursor [...
CHRNA10               0.153   cholinergic receptor, nicotinic, alpha 10 
CHRNA6                0.146   cholinergic receptor, nicotinic, alpha 6 
CHRNB3                0.146   cholinergic receptor, nicotinic, beta polypeptide 3 [...
CHRNA4                0.145   cholinergic receptor, nicotinic, alpha 4 subunit prec...
CHRNA3                0.143   cholinergic receptor, nicotinic, alpha 3 
CHRNA2                0.142   cholinergic receptor, nicotinic, alpha polypeptide ...
CHRNB2                0.142   neuronal nicotinic acetylcholine receptor beta 2 prec...
CHRNA7                0.134   cholinergic receptor, nicotinic, alpha 7 precursor [H...
CHRNB1                0.131   nicotinic acetylcholine receptor beta 1 subunit prec...
CHRNB4                0.130   cholinergic receptor, nicotinic, beta 4 
CHRNA5                0.129   cholinergic receptor, nicotinic, alpha 5 
CHRND                 0.114   nicotinic acetylcholine receptor delta polypeptide pr...
CHRNA1                0.112   nicotinic cholinergic receptor alpha 1 isoform b prec...
CHRNG                 0.106   cholinergic receptor, nicotinic, gamma polypeptide p...
CHRNA1                0.100   nicotinic cholinergic receptor alpha 1 isoform a pre...
CHRNE                 0.091   nicotinic acetylcholine receptor epsilon polypeptide ...
ZACN                  0.085   zinc activated ligand-gated ion channel 
CHRFAM7A              0.084   CHRNA7-FAM7A fusion isoform 1 
GABRQ                 0.059   gamma-aminobutyric acid (GABA) receptor, theta precur...
CHRFAM7A              0.054   CHRNA7-FAM7A fusion isoform 2 
GABRR1                0.054   gamma-aminobutyric acid (GABA) receptor, rho 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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