Guide to the Human Genome
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Name: CHRNG Sequence: fasta or formatted (517aa) NCBI GI: 61743914
Description:

cholinergic receptor, nicotinic, gamma polypeptide precursor

Referenced in:

Acetylcholine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         43           3
 C cysteine            2.9         15           1
 D aspartate           3.9         20           1
 E glutamate           5.2         27           2
 F phenylalanine       4.3         22           1
 G glycine             5.0         26           2
 H histidine           1.9         10           1
 I isoleucine          5.4         28           2
 K lysine              2.5         13           2
 L leucine            14.1         73           7
 M methionine          1.7          9           1
 N asparagine          4.3         22           2
 P proline             6.4         33           2
 Q glutamine           6.0         31           2
 R arginine            5.2         27           1
 S serine              5.6         29           2
 T threonine           3.9         20           2
 V valine              8.7         45           3
 W tryptophan          2.3         12           1
 Y tyrosine            2.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cholinergic receptor, nicotinic, gamma polypeptide p... 
CHRNE                 0.444   nicotinic acetylcholine receptor epsilon polypeptide ...
CHRND                 0.415   nicotinic acetylcholine receptor delta polypeptide pr...
CHRNB1                0.341   nicotinic acetylcholine receptor beta 1 subunit prec...
CHRNB2                0.295   neuronal nicotinic acetylcholine receptor beta 2 prec...
CHRNB4                0.286   cholinergic receptor, nicotinic, beta 4 
CHRNA2                0.253   cholinergic receptor, nicotinic, alpha polypeptide ...
CHRNA4                0.252   cholinergic receptor, nicotinic, alpha 4 subunit prec...
CHRNA6                0.250   cholinergic receptor, nicotinic, alpha 6 
CHRNA3                0.247   cholinergic receptor, nicotinic, alpha 3 
CHRNA1                0.231   nicotinic cholinergic receptor alpha 1 isoform b prec...
CHRNA5                0.220   cholinergic receptor, nicotinic, alpha 5 
CHRNA1                0.218   nicotinic cholinergic receptor alpha 1 isoform a pre...
CHRNB3                0.216   cholinergic receptor, nicotinic, beta polypeptide 3 [...
CHRNA7                0.204   cholinergic receptor, nicotinic, alpha 7 precursor [H...
CHRNA10               0.193   cholinergic receptor, nicotinic, alpha 10 
CHRNA9                0.188   cholinergic receptor, nicotinic, alpha 9 precursor [...
CHRFAM7A              0.124   CHRNA7-FAM7A fusion isoform 1 
HTR3A                 0.118   5-hydroxytryptamine (serotonin) receptor 3A isoform...
HTR3A                 0.116   5-hydroxytryptamine (serotonin) receptor 3A isoform...
HTR3A                 0.112   5-hydroxytryptamine (serotonin) receptor 3A isoform...
HTR3E                 0.097   5-hydroxytryptamine receptor 3 subunit E 
HTR3C                 0.097   5-hydroxytryptamine receptor 3 subunit C 
HTR3B                 0.095   5-hydroxytryptamine (serotonin) receptor 3B precursor...
CHRFAM7A              0.076   CHRNA7-FAM7A fusion isoform 2 
GLRB                  0.047   glycine receptor, beta 
GABRA4                0.044   gamma-aminobutyric acid A receptor, alpha 4 precurso...
GABRQ                 0.043   gamma-aminobutyric acid (GABA) receptor, theta precur...
GABRA1                0.042   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.042   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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