Guide to the Human Genome
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Name: CHRND Sequence: fasta or formatted (517aa) NCBI GI: 4557461
Description:

nicotinic acetylcholine receptor delta polypeptide precursor

Referenced in:

Acetylcholine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         28           2
 C cysteine            1.4          7           1
 D aspartate           3.7         19           1
 E glutamate           7.2         37           3
 F phenylalanine       5.0         26           1
 G glycine             4.4         23           1
 H histidine           1.9         10           1
 I isoleucine          6.0         31           3
 K lysine              4.3         22           2
 L leucine            12.0         62           3
 M methionine          1.9         10           1
 N asparagine          5.2         27           3
 P proline             6.8         35           3
 Q glutamine           2.9         15           2
 R arginine            5.6         29           2
 S serine              7.5         39           3
 T threonine           4.4         23           2
 V valine              8.9         46           3
 W tryptophan          2.1         11           1
 Y tyrosine            3.3         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nicotinic acetylcholine receptor delta polypeptide pr... 
CHRNG                 0.417   cholinergic receptor, nicotinic, gamma polypeptide p...
CHRNE                 0.390   nicotinic acetylcholine receptor epsilon polypeptide ...
CHRNB2                0.349   neuronal nicotinic acetylcholine receptor beta 2 prec...
CHRNB1                0.334   nicotinic acetylcholine receptor beta 1 subunit prec...
CHRNB4                0.325   cholinergic receptor, nicotinic, beta 4 
CHRNA3                0.308   cholinergic receptor, nicotinic, alpha 3 
CHRNA6                0.301   cholinergic receptor, nicotinic, alpha 6 
CHRNA2                0.299   cholinergic receptor, nicotinic, alpha polypeptide ...
CHRNB3                0.270   cholinergic receptor, nicotinic, beta polypeptide 3 [...
CHRNA1                0.268   nicotinic cholinergic receptor alpha 1 isoform b prec...
CHRNA4                0.266   cholinergic receptor, nicotinic, alpha 4 subunit prec...
CHRNA5                0.259   cholinergic receptor, nicotinic, alpha 5 
CHRNA1                0.258   nicotinic cholinergic receptor alpha 1 isoform a pre...
CHRNA7                0.222   cholinergic receptor, nicotinic, alpha 7 precursor [H...
CHRNA9                0.215   cholinergic receptor, nicotinic, alpha 9 precursor [...
CHRNA10               0.203   cholinergic receptor, nicotinic, alpha 10 
CHRFAM7A              0.152   CHRNA7-FAM7A fusion isoform 1 
HTR3A                 0.148   5-hydroxytryptamine (serotonin) receptor 3A isoform...
HTR3A                 0.148   5-hydroxytryptamine (serotonin) receptor 3A isoform...
HTR3A                 0.142   5-hydroxytryptamine (serotonin) receptor 3A isoform...
CHRFAM7A              0.106   CHRNA7-FAM7A fusion isoform 2 
HTR3C                 0.105   5-hydroxytryptamine receptor 3 subunit C 
HTR3E                 0.105   5-hydroxytryptamine receptor 3 subunit E 
HTR3B                 0.102   5-hydroxytryptamine (serotonin) receptor 3B precursor...
GABRA6                0.044   gamma-aminobutyric acid A receptor, alpha 6 precurs...
GABRA4                0.042   gamma-aminobutyric acid A receptor, alpha 4 precurso...
GABRG3                0.040   gamma-aminobutyric acid (GABA) A receptor, gamma 3 ...
GABRG2                0.040   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRG2                0.040   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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