Guide to the Human Genome
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Name: EPB49 Sequence: fasta or formatted (405aa) NCBI GI: 166706875
Description:

erythrocyte membrane protein band 4.9 isoform 1

Referenced in:

LIM Domain Proteins
Hematopoiesis and Erythrocytes

Other entries for this name:
alt mRNA [405aa] erythrocyte membrane protein band 4.9 isoform 1
alt mRNA [405aa] erythrocyte membrane protein band 4.9 isoform 1
alt prot [383aa] erythrocyte membrane protein band 4.9 isoform 2
alt prot [383aa] erythrocyte membrane protein band 4.9 isoform 2
alt prot [358aa] erythrocyte membrane protein band 4.9 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         19           2
 C cysteine            0.5          2           1
 D aspartate           4.4         18           3
 E glutamate           9.6         39           7
 F phenylalanine       2.2          9           1
 G glycine             5.4         22           2
 H histidine           2.2          9           2
 I isoleucine          4.0         16           2
 K lysine              7.2         29           3
 L leucine             8.6         35           2
 M methionine          2.5         10           1
 N asparagine          2.0          8           1
 P proline            10.4         42           3
 Q glutamine           3.5         14           1
 R arginine            8.1         33           2
 S serine             12.3         50           3
 T threonine           5.4         22           2
 V valine              3.7         15           2
 W tryptophan          1.0          4           1
 Y tyrosine            2.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   erythrocyte membrane protein band 4.9 isoform 1 [Ho... 
EPB49                 1.000   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 1.000   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 0.927   erythrocyte membrane protein band 4.9 isoform 2 [Ho...
EPB49                 0.927   erythrocyte membrane protein band 4.9 isoform 2 [Ho...
EPB49                 0.852   erythrocyte membrane protein band 4.9 isoform 3 [Ho...
ABLIM1                0.355   actin-binding LIM protein 1 isoform s 
ABLIM1                0.346   actin-binding LIM protein 1 isoform c 
ABLIM1                0.346   actin-binding LIM protein 1 isoform b 
ABLIM1                0.346   actin-binding LIM protein 1 isoform a 
ABLIM3                0.211   actin binding LIM protein family, member 3 
ABLIM2                0.163   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.152   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.095   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.090   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.090   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.090   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.062   actin binding LIM protein family, member 2 isoform ...
VIL1                  0.047   villin 1 
VILL                  0.025   villin-like protein 
SVIL                  0.024   supervillin isoform 2 
SVIL                  0.024   supervillin isoform 1 
BSN                   0.023   bassoon protein 
AVIL                  0.023   advillin 
EIF4G1                0.018   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.018   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.018   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.018   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.018   eukaryotic translation initiation factor 4 gamma, 1 ...
RAI14                 0.018   retinoic acid induced 14 isoform d 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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