Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PRAMEF1 Sequence: fasta or formatted (474aa) NCBI GI: 12738831
Description:

PRAME family member 1

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         20           2
 C cysteine            4.0         19           2
 D aspartate           2.5         12           1
 E glutamate           7.2         34           2
 F phenylalanine       3.8         18           2
 G glycine             3.4         16           1
 H histidine           2.7         13           2
 I isoleucine          4.9         23           2
 K lysine              5.3         25           1
 L leucine            19.2         91           2
 M methionine          2.5         12           1
 N asparagine          2.5         12           1
 P proline             5.5         26           2
 Q glutamine           4.6         22           1
 R arginine            7.2         34           2
 S serine              7.6         36           2
 T threonine           4.4         21           2
 V valine              3.4         16           1
 W tryptophan          1.7          8           1
 Y tyrosine            3.4         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PRAME family member 1 
PRAMEF13              0.966   PRAME family member 13 
PRAMEF2               0.933   PRAME family member 2 
PRAMEF14              0.845   PRAME family member 14 
PRAMEF19              0.576   PRAME family member 19 
PRAMEF22              0.571   PRAME family member 22 
PRAMEF18              0.571   PRAME family member 18 
PRAMEF3               0.565   PRAME family member 3 
PRAMEF10              0.565   PRAME family member 10 
PRAMEF17              0.563   PRAME family member 17 
PRAMEF16              0.561   PRAME family member 16 
LOC645382             0.521   PREDICTED: similar to PRAME family member 10 
LOC645399             0.520   PREDICTED: similar to PRAME family member 10 
PRAMEF25              0.473   PREDICTED: PRAME family member 25-like 
PRAMEF12              0.468   PRAME family member 12 
LOC729516             0.453   PREDICTED: similar to Putative PRAME family member ...
PRAMEF8               0.453   PRAME family member 8 
PRAMEF7               0.450   PRAME family member 7 
PRAMEF20              0.428   PRAME family member 20 
PRAMEF21              0.428   PRAME family member 21 
PRAMEF15              0.409   PRAME family member 15 
PRAMEF9               0.409   PRAME family member 9 
PRAMEF5               0.409   PRAME family member 5 
PRAMEF6               0.409   PRAME family member 6 
PRAMEF23              0.406   PREDICTED: PRAME family member 23 
PRAMEF11              0.402   PREDICTED: PRAME family member 11 
PRAMEF4               0.400   PRAME family member 4 
PRAME                 0.349   preferentially expressed antigen in melanoma 
PRAME                 0.349   preferentially expressed antigen in melanoma 
PRAME                 0.349   preferentially expressed antigen in melanoma 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press