Guide to the Human Genome
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Name: PRAMEF10 Sequence: fasta or formatted (474aa) NCBI GI: 194018546
Description:

PRAME family member 10

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         19           2
 C cysteine            3.2         15           2
 D aspartate           4.0         19           1
 E glutamate           6.5         31           1
 F phenylalanine       4.6         22           2
 G glycine             3.8         18           2
 H histidine           2.7         13           1
 I isoleucine          3.6         17           1
 K lysine              5.3         25           2
 L leucine            17.7         84           2
 M methionine          3.2         15           1
 N asparagine          2.7         13           1
 P proline             6.1         29           1
 Q glutamine           4.2         20           1
 R arginine            6.3         30           2
 S serine              7.4         35           2
 T threonine           4.4         21           2
 V valine              4.9         23           1
 W tryptophan          2.1         10           1
 Y tyrosine            3.2         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PRAME family member 10 
PRAMEF17              0.866   PRAME family member 17 
PRAMEF16              0.864   PRAME family member 16 
LOC645399             0.848   PREDICTED: similar to PRAME family member 10 
LOC645382             0.848   PREDICTED: similar to PRAME family member 10 
PRAMEF22              0.592   PRAME family member 22 
PRAMEF3               0.586   PRAME family member 3 
PRAMEF18              0.584   PRAME family member 18 
PRAMEF19              0.580   PRAME family member 19 
PRAMEF1               0.560   PRAME family member 1 
PRAMEF13              0.552   PRAME family member 13 
PRAMEF2               0.535   PRAME family member 2 
PRAMEF14              0.511   PRAME family member 14 
PRAMEF25              0.506   PREDICTED: PRAME family member 25-like 
PRAMEF12              0.460   PRAME family member 12 
LOC729516             0.445   PREDICTED: similar to Putative PRAME family member ...
PRAMEF8               0.445   PRAME family member 8 
PRAMEF7               0.442   PRAME family member 7 
PRAMEF20              0.422   PRAME family member 20 
PRAMEF21              0.422   PRAME family member 21 
PRAMEF15              0.405   PRAME family member 15 
PRAMEF9               0.405   PRAME family member 9 
PRAMEF5               0.402   PRAME family member 5 
PRAMEF6               0.401   PRAME family member 6 
PRAMEF23              0.400   PREDICTED: PRAME family member 23 
PRAMEF11              0.399   PREDICTED: PRAME family member 11 
PRAMEF4               0.396   PRAME family member 4 
PRAME                 0.355   preferentially expressed antigen in melanoma 
PRAME                 0.355   preferentially expressed antigen in melanoma 
PRAME                 0.355   preferentially expressed antigen in melanoma 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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