Guide to the Human Genome
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Name: PRAMEF19 Sequence: fasta or formatted (479aa) NCBI GI: 194306635
Description:

PRAME family member 19

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         19           2
 C cysteine            4.2         20           2
 D aspartate           4.4         21           1
 E glutamate           6.9         33           2
 F phenylalanine       5.0         24           2
 G glycine             4.4         21           1
 H histidine           1.3          6           1
 I isoleucine          3.5         17           1
 K lysine              3.8         18           1
 L leucine            15.9         76           2
 M methionine          3.1         15           1
 N asparagine          2.9         14           1
 P proline             5.8         28           1
 Q glutamine           4.2         20           1
 R arginine            8.6         41           3
 S serine              7.7         37           2
 T threonine           4.0         19           2
 V valine              6.3         30           2
 W tryptophan          1.7          8           1
 Y tyrosine            2.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PRAME family member 19 
PRAMEF18              0.996   PRAME family member 18 
PRAMEF22              0.912   PRAME family member 22 
PRAMEF3               0.903   PRAME family member 3 
PRAMEF25              0.668   PREDICTED: PRAME family member 25-like 
PRAMEF10              0.577   PRAME family member 10 
PRAMEF1               0.568   PRAME family member 1 
PRAMEF17              0.565   PRAME family member 17 
PRAMEF16              0.563   PRAME family member 16 
PRAMEF13              0.555   PRAME family member 13 
PRAMEF2               0.547   PRAME family member 2 
LOC645382             0.535   PREDICTED: similar to PRAME family member 10 
LOC645399             0.535   PREDICTED: similar to PRAME family member 10 
PRAMEF14              0.485   PRAME family member 14 
PRAMEF12              0.466   PRAME family member 12 
PRAMEF20              0.451   PRAME family member 20 
PRAMEF21              0.451   PRAME family member 21 
LOC729516             0.442   PREDICTED: similar to Putative PRAME family member ...
PRAMEF8               0.442   PRAME family member 8 
PRAMEF7               0.438   PRAME family member 7 
PRAMEF15              0.409   PRAME family member 15 
PRAMEF9               0.409   PRAME family member 9 
PRAMEF5               0.408   PRAME family member 5 
PRAMEF6               0.407   PRAME family member 6 
PRAMEF23              0.404   PREDICTED: PRAME family member 23 
PRAMEF11              0.403   PREDICTED: PRAME family member 11 
PRAMEF4               0.402   PRAME family member 4 
PRAMEF11              0.346   PRAME family member 11 
PRAME                 0.341   preferentially expressed antigen in melanoma 
PRAME                 0.341   preferentially expressed antigen in melanoma 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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