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Search of human proteins with 153791244
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153791244 hypothetical protein LOC55237 [Homo sapiens]
(702 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153791244 hypothetical protein LOC55237 [Homo sapiens] 1414 0.0
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 35 0.31
gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens] 34 0.40
gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens] 33 1.2
gi|61743942 abl-interactor 1 isoform a [Homo sapiens] 33 1.2
gi|239755911 PREDICTED: hypothetical protein [Homo sapiens] 32 1.5
gi|239744727 PREDICTED: hypothetical protein XP_002343254 [Homo ... 32 1.5
gi|91208420 bassoon protein [Homo sapiens] 32 1.5
gi|146134388 YLP motif containing 1 [Homo sapiens] 32 1.5
gi|238859655 tetratricopeptide repeat domain 31 [Homo sapiens] 32 2.0
gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens] 32 2.0
gi|4507339 transcription factor T [Homo sapiens] 32 2.6
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 32 2.6
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 32 2.6
gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens] 32 2.6
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 32 2.6
gi|5454132 tumor necrosis factor, alpha-induced protein 3 [Homo ... 31 3.4
gi|239755648 PREDICTED: hypothetical protein [Homo sapiens] 31 4.5
gi|239747214 PREDICTED: hypothetical protein XP_002346940 [Homo ... 31 4.5
gi|239741020 PREDICTED: hypothetical protein XP_002342065 [Homo ... 31 4.5
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 31 4.5
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 31 4.5
gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens] 31 4.5
gi|6912492 mitogen-activated protein kinase 8 interacting protei... 31 4.5
gi|7706537 mitogen-activated protein kinase 8 interacting protei... 31 4.5
gi|148747556 PIN2-interacting protein 1 [Homo sapiens] 30 5.8
gi|239752675 PREDICTED: hypothetical protein XP_002345422 [Homo ... 30 5.8
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ... 30 5.8
gi|239746974 PREDICTED: hypothetical protein XP_002343900 [Homo ... 30 5.8
gi|239746972 PREDICTED: hypothetical protein XP_002343899 [Homo ... 30 5.8
>gi|153791244 hypothetical protein LOC55237 [Homo sapiens]
Length = 702
Score = 1414 bits (3661), Expect = 0.0
Identities = 702/702 (100%), Positives = 702/702 (100%)
Query: 1 MTSRNQLVQKVLQELQEAVECEGLEGLIGASLEAKQVLSSFTLPTCREGGPGLQVLEVDS 60
MTSRNQLVQKVLQELQEAVECEGLEGLIGASLEAKQVLSSFTLPTCREGGPGLQVLEVDS
Sbjct: 1 MTSRNQLVQKVLQELQEAVECEGLEGLIGASLEAKQVLSSFTLPTCREGGPGLQVLEVDS 60
Query: 61 VALSLYPEDAPRNMLPLVCKGEGSLLFEAASMLLWGDAGLSLELRARTVVEMLLHRHYYL 120
VALSLYPEDAPRNMLPLVCKGEGSLLFEAASMLLWGDAGLSLELRARTVVEMLLHRHYYL
Sbjct: 61 VALSLYPEDAPRNMLPLVCKGEGSLLFEAASMLLWGDAGLSLELRARTVVEMLLHRHYYL 120
Query: 121 QGMIDSKVMLQAVRYSLCSEESPEMTSLPPATLEAIFDADVKASCFPSSFSNVWHLYALA 180
QGMIDSKVMLQAVRYSLCSEESPEMTSLPPATLEAIFDADVKASCFPSSFSNVWHLYALA
Sbjct: 121 QGMIDSKVMLQAVRYSLCSEESPEMTSLPPATLEAIFDADVKASCFPSSFSNVWHLYALA 180
Query: 181 SVLQRNIYSIYPMRNLKIRPYFNRVIRPRRCDHVPSTLHIMWAGQPLTSHFFRHQYFAPV 240
SVLQRNIYSIYPMRNLKIRPYFNRVIRPRRCDHVPSTLHIMWAGQPLTSHFFRHQYFAPV
Sbjct: 181 SVLQRNIYSIYPMRNLKIRPYFNRVIRPRRCDHVPSTLHIMWAGQPLTSHFFRHQYFAPV 240
Query: 241 VGLEEVEAEGAPGVAPALPALAPLSSPAKTLELLNREPGLSYSHLCERYSVTKSTFYRWR 300
VGLEEVEAEGAPGVAPALPALAPLSSPAKTLELLNREPGLSYSHLCERYSVTKSTFYRWR
Sbjct: 241 VGLEEVEAEGAPGVAPALPALAPLSSPAKTLELLNREPGLSYSHLCERYSVTKSTFYRWR 300
Query: 301 RQSQEHRQKVAARFSAKHFLQDSFHRGGVVPLQQFLQRFPEISRSTYYAWKHELLGSGTC 360
RQSQEHRQKVAARFSAKHFLQDSFHRGGVVPLQQFLQRFPEISRSTYYAWKHELLGSGTC
Sbjct: 301 RQSQEHRQKVAARFSAKHFLQDSFHRGGVVPLQQFLQRFPEISRSTYYAWKHELLGSGTC 360
Query: 361 PALPPREVLGMEELEKLPEEQVAEEELECSALAVSSPGMVLMQRAKLYLEHCISLNTLVP 420
PALPPREVLGMEELEKLPEEQVAEEELECSALAVSSPGMVLMQRAKLYLEHCISLNTLVP
Sbjct: 361 PALPPREVLGMEELEKLPEEQVAEEELECSALAVSSPGMVLMQRAKLYLEHCISLNTLVP 420
Query: 421 YRCFKRRFPGISRSTYYNWRRKALRRNPSFKPAPALSAAGTPQLASVGEGAVIPWKSEAE 480
YRCFKRRFPGISRSTYYNWRRKALRRNPSFKPAPALSAAGTPQLASVGEGAVIPWKSEAE
Sbjct: 421 YRCFKRRFPGISRSTYYNWRRKALRRNPSFKPAPALSAAGTPQLASVGEGAVIPWKSEAE 480
Query: 481 EGAGNATGEDPPAPGELLPLRMPLSRWQRRLRRAARRQVLSGHLPFCRFRLRYPSLSPSA 540
EGAGNATGEDPPAPGELLPLRMPLSRWQRRLRRAARRQVLSGHLPFCRFRLRYPSLSPSA
Sbjct: 481 EGAGNATGEDPPAPGELLPLRMPLSRWQRRLRRAARRQVLSGHLPFCRFRLRYPSLSPSA 540
Query: 541 FWVWKSLARGWPRGLSKLQVPVPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGASSEDVE 600
FWVWKSLARGWPRGLSKLQVPVPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGASSEDVE
Sbjct: 541 FWVWKSLARGWPRGLSKLQVPVPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGASSEDVE 600
Query: 601 GGPSREGALQEGATAQGQPHSGPLLSQPVVAAAGGRDGRMLVMDMIATTKFKAQAKLFLQ 660
GGPSREGALQEGATAQGQPHSGPLLSQPVVAAAGGRDGRMLVMDMIATTKFKAQAKLFLQ
Sbjct: 601 GGPSREGALQEGATAQGQPHSGPLLSQPVVAAAGGRDGRMLVMDMIATTKFKAQAKLFLQ 660
Query: 661 KRFQSKSFPSYKEFSALFPLTARSTYYMWKRALYDGLTLVDG 702
KRFQSKSFPSYKEFSALFPLTARSTYYMWKRALYDGLTLVDG
Sbjct: 661 KRFQSKSFPSYKEFSALFPLTARSTYYMWKRALYDGLTLVDG 702
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 34.7 bits (78), Expect = 0.31
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 31/190 (16%)
Query: 440 RRKALRRNPSFKPAPALSAAGTPQLASVGEGAVIPWKSEAEEGAGNATGEDPPAPGELLP 499
R + +R+PS PAPA +AA P EA+E A +++G P P
Sbjct: 491 RERYRQRSPSPAPAPAPAAAAGPPTRKKSR-RERKRSGEAKEAASSSSGTQPAPPA---- 545
Query: 500 LRMPLSRWQRRLRRAARRQVLSGHLPFCRFRLRYPSLSPSAFWVWKSLARGWPRGLSKLQ 559
P S W + R+ R+ S R R R S S S +S R
Sbjct: 546 ---PASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDR---------- 592
Query: 560 VPVPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGASS---EDVEGGPSREGA----LQEG 612
+GG +EK R +A P +SS + G R+G ++
Sbjct: 593 ------RRGGSRRSRSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKR 646
Query: 613 ATAQGQPHSG 622
+ ++G+ SG
Sbjct: 647 SRSRGEKRSG 656
>gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]
Length = 1316
Score = 34.3 bits (77), Expect = 0.40
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 569 GQEAEEKQEKEAGRDVTAVMAPPVGASSEDVEGGPSREGALQEGATAQGQPHSGPLLSQP 628
GQ+AE+ E+ ++ M GA+S D + P G +GA+ QGQP L S+
Sbjct: 638 GQDAED--EEATPHELQEPMTLN-GANSADSDSDPKENGLAPDGASCQGQP---ALHSEN 691
Query: 629 VVAAAGGRDGRMLVMDMIATTKFK 652
A A G G+++ +++ + K
Sbjct: 692 PFAKANGLPGKLMPAPLLSLPEDK 715
>gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens]
Length = 1118
Score = 32.7 bits (73), Expect = 1.2
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 19/105 (18%)
Query: 529 FRLRYPSLSPSAFWVWKS---LARGWPRGLSKLQVPVPTLGKGGQEAEEKQEKEAGRDVT 585
F L P + P ++ + RG P+G + G+GG +Q+ G
Sbjct: 985 FNLVMPPMPPPGYFGQANGPAAGRGTPKGKT---------GRGG-----RQKNRFGLPGP 1030
Query: 586 AVMAPPVGASSEDVEGGPSREGALQEGATAQGQPH--SGPLLSQP 628
+ P +S+DV P +GAL +G + QP S P LSQP
Sbjct: 1031 SQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQP 1075
>gi|61743942 abl-interactor 1 isoform a [Homo sapiens]
Length = 508
Score = 32.7 bits (73), Expect = 1.2
Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 6/132 (4%)
Query: 239 PVVGLEEVEAEGAPGVAPALPALAPLSSPAKTLELLNREPGLSYSHLCERYSVTKSTFYR 298
P +G E + G PA P LAPL + + PG Y + + S ST
Sbjct: 269 PTIGPENISVPPPSGAPPA-PPLAPLLPVSTVIAAPGSAPGSQYGTMTRQISRHNSTTSS 327
Query: 299 WRRQSQEHRQKVAARFSAKHFLQDS--FHRGGV---VPLQQFLQRFPEISRSTYYAWKHE 353
V A+FSA+ + + + + P Q P+I + + A E
Sbjct: 328 TSSGGYRRTPSVTAQFSAQPHVNGGPLYSQNSISIAPPPPPMPQLTPQIPLTGFVARVQE 387
Query: 354 LLGSGTCPALPP 365
+ P PP
Sbjct: 388 NIADSPTPPPPP 399
>gi|239755911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 667
Score = 32.3 bits (72), Expect = 1.5
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 569 GQEAEEKQEKEAGRDVTAVMAPPVG-ASSEDVEGGPSREGALQEGATAQGQPHSG--PLL 625
G+ ++KQ K AG A PVG AS E P +LQ+G+ A P LL
Sbjct: 478 GKLFQKKQAKHAGNPEPRAEAIPVGVASQEKQRPAPRGVPSLQDGSWAAQAPWGTHLTLL 537
Query: 626 SQPVVAAAGGRDGRMLVMDMIATTKFKAQAKLFL 659
S + A G GR+++ F A L L
Sbjct: 538 STALSLAGGLVIGRLVLTTFTGCCSFPALLYLLL 571
>gi|239744727 PREDICTED: hypothetical protein XP_002343254 [Homo
sapiens]
Length = 567
Score = 32.3 bits (72), Expect = 1.5
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 569 GQEAEEKQEKEAGRDVTAVMAPPVG-ASSEDVEGGPSREGALQEGATAQGQPHSG--PLL 625
G+ ++KQ K AG A PVG AS E P +LQ+G+ A P LL
Sbjct: 378 GKLFQKKQAKHAGNPEPRAEAIPVGVASQEKQRPAPRGVPSLQDGSWAAQAPWGTHLTLL 437
Query: 626 SQPVVAAAGGRDGRMLVMDMIATTKFKAQAKLFL 659
S + A G GR+++ F A L L
Sbjct: 438 STALSLAGGLVIGRLVLTTFTGCCSFPALLYLLL 471
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 32.3 bits (72), Expect = 1.5
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 332 LQQFLQRFPEISRSTYYAWKHEL-LGSGTCPALPPREVLGMEELEKLPEEQVAEEELECS 390
LQ L+RF I ++ ++ HEL LG G P+L L ME L PE++ E S
Sbjct: 924 LQGGLRRFKTIELNSTGSYGHELDLGQGPDPSLDREPELEMESLTGSPEDRSRGE--HSS 981
Query: 391 ALAVSSP 397
L S+P
Sbjct: 982 TLPASTP 988
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 32.3 bits (72), Expect = 1.5
Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 7/140 (5%)
Query: 557 KLQVPVPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGASSEDVEGGPSREGALQEGATAQ 616
++ +P P+L A ++K ++V ++ PP E P R + G
Sbjct: 1792 RMPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPP------GRESRPERIVVIMRGLPGS 1845
Query: 617 GQPHSGPLLSQPVVAAAGGRDGRMLVMDMIATTKFKAQAKLFLQKRFQSKSFPSYKEFSA 676
G+ H L+ V GG R+L +D T+ + + K + K Y+ +
Sbjct: 1846 GKTHVAKLIRDKEV-EFGGPAPRVLSLDDYFITEVEKEEKDPDSGKKVKKKVMEYEYEAE 1904
Query: 677 LFPLTARSTYYMWKRALYDG 696
+ S + +K+ L DG
Sbjct: 1905 MEETYRTSMFKTFKKTLDDG 1924
>gi|238859655 tetratricopeptide repeat domain 31 [Homo sapiens]
Length = 519
Score = 32.0 bits (71), Expect = 2.0
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 520 LSGHLPFCRFRLRYPSLSPSAFWVWKSLARGWPRGLSKLQVPVPTLGKGGQEAEEKQE-- 577
L G+ FC RL P+ + + V +L GWPRGL +L + L + + A QE
Sbjct: 341 LFGNRSFCHERLGQPAWALADAQVALTLRPGWPRGLFRLGKALMGLQRFREAAAVFQETL 400
Query: 578 -----KEAGRDVTAVMAPPVGASSEDVEGG----PSREGALQEGATAQGQPHSGPLLSQP 628
+A R++ + + + + + GG P GALQ A+ P P L P
Sbjct: 401 RGGSQPDAARELRSCL---LHLTLQGQRGGICAPPLSPGALQPLPHAELAPSGLPSLRCP 457
>gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens]
Length = 1056
Score = 32.0 bits (71), Expect = 2.0
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 446 RNPSFKPAPALSAAGTPQLASVGEGAVIPWKSEAEEGAGNAT-GEDP-----------PA 493
R P +P+PA S G+PQL G + W +A + + T GE P P
Sbjct: 454 RGPGPRPSPASSQEGSPQLQHHSSGILPKWTLDASQSSLLETDGEQPSSLKKKEAGEAPK 513
Query: 494 PGE 496
PGE
Sbjct: 514 PGE 516
>gi|4507339 transcription factor T [Homo sapiens]
Length = 435
Score = 31.6 bits (70), Expect = 2.6
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 438 NWRRKALRRNPSFKP-----APALSAAGTPQLASVGEGAVIPWKSEAEEGAGNATGEDPP 492
NW + +PS P +P S++ P L SV GAV P A G
Sbjct: 319 NWSSLGMPAHPSMLPVSHNASPPTSSSQYPSLWSVSNGAVTPGSQAAAVSNGLGAQFFRG 378
Query: 493 APGELLPLRMPLS 505
+P PL P+S
Sbjct: 379 SPAHYTPLTHPVS 391
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 31.6 bits (70), Expect = 2.6
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 21/86 (24%)
Query: 566 GKGGQEAEEKQEKEAGR-DVTAVMAPPVGA---------------SSEDVEGGPSREGAL 609
GKG QE + QE+EAGR +A P G S+ + + G E L
Sbjct: 1418 GKGSQEDDPVQEEEAGRASASAEPCPAEGTEEPTEPPSHLSETDPSASERQSGSQLEPGL 1477
Query: 610 QE--GATAQGQPHSGPLLSQPVVAAA 633
++ GAT GQ H+ +QP AA
Sbjct: 1478 EKPPGATMMGQEHT---QAQPTQGAA 1500
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 31.6 bits (70), Expect = 2.6
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 562 VPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGAS---SEDVEGGPSREGALQEGATAQGQ 618
V + K G E E+ +EK AG ++ AP A S D+ + E Q+G +A+ +
Sbjct: 558 VQKVNKAGMEKEKAEEKLAGEELAGEEAPQEKAEDKPSTDLSAPVNGEATSQKGESAEDK 617
Query: 619 PH 620
H
Sbjct: 618 EH 619
>gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens]
Length = 1222
Score = 31.6 bits (70), Expect = 2.6
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 443 ALRRNPSFKPAPALSAAGTPQLAS-VGEGAVIPWKSEAEEGAGNATGEDPPAPGELLPLR 501
A P+ +P L G L++ V GA I W + G A PPA L P R
Sbjct: 4 ARTERPAGRPGAPLVRTGLLLLSTWVLAGAEITWDATGGPGRPAAPASRPPALSPLSP-R 62
Query: 502 MPLSRWQRRLRRAARRQVL 520
S+W L A R VL
Sbjct: 63 AVASQWPEELASARRAAVL 81
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 31.6 bits (70), Expect = 2.6
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 562 VPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGAS---SEDVEGGPSREGALQEGATAQGQ 618
V + K G E E+ +EK AG ++ AP A S D+ + E Q+G +A+ +
Sbjct: 558 VQKVNKAGMEKEKAEEKLAGEELAGEEAPQEKAEDKPSTDLSAPVNGEATSQKGESAEDK 617
Query: 619 PH 620
H
Sbjct: 618 EH 619
>gi|5454132 tumor necrosis factor, alpha-induced protein 3 [Homo
sapiens]
Length = 790
Score = 31.2 bits (69), Expect = 3.4
Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 16/183 (8%)
Query: 72 RNMLPLVCKGEGSLLFEAASMLLWG--DAGLSLELRARTVVEMLLHRHYYLQGMIDSKVM 129
R ++ L G+G+ L A S +WG D L L + ++ R++ + ++S
Sbjct: 90 RKLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKS 149
Query: 130 LQAVRYSLCSEESPEMTSLPPATLEAIFDADVKASCFPSSFSNVWHLYALASVLQRNIYS 189
+ V LC + A D + S + H++ L ++L+R I
Sbjct: 150 QEFVETGLCYDTRNWNDEWDNLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIV 209
Query: 190 IYP--MRNLKIRPYFNRVIRPRRCDHVPSTLHIMWAGQ-----PLTSHFFRHQYFAPVVG 242
I +R+L+ F P + + LH W Q P+ + H +F P+V
Sbjct: 210 ISDKMLRSLESGSNF----APLKVGGIYLPLH--WPAQECYRYPIVLGYDSH-HFVPLVT 262
Query: 243 LEE 245
L++
Sbjct: 263 LKD 265
>gi|239755648 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 30.8 bits (68), Expect = 4.5
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 551 WPRGLSKL----QVPVPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGASSEDVEGGPSRE 606
WP L + P PT + E Q+K R+ V VG ++ EG +
Sbjct: 135 WPPSALPLYGLAEPPAPTWTRQVGEESRVQQKAGVREQRIVTVDGVGRTAGIQEGPGHQT 194
Query: 607 GALQEGATAQGQPHSGPLL----------SQPVVAAAGGRD 637
Q A G+P P+L SQPV +AG +
Sbjct: 195 EKAQVSAAGSGEPARRPMLISRTGTLKPQSQPVQPSAGAEN 235
>gi|239747214 PREDICTED: hypothetical protein XP_002346940 [Homo
sapiens]
Length = 247
Score = 30.8 bits (68), Expect = 4.5
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 542 WVWK---SLARGWPRGLSKLQVPVPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGASSED 598
W WK SL RG PR + + P E + + ++++ +G
Sbjct: 92 WGWKAASSLTRGEPRTIGSPEAGFPPASSRSSEWKRCPRSFSSKELSECRWAMLGGCGAH 151
Query: 599 VE-GGPSREGALQEGATAQGQPHSGPLLSQPVVAAAGGRDG 638
+ G R G GA A P GP+LS A A R G
Sbjct: 152 LRRGAEGRRG----GALAVQLPAPGPVLSCSRFAPAAARSG 188
>gi|239741020 PREDICTED: hypothetical protein XP_002342065 [Homo
sapiens]
Length = 247
Score = 30.8 bits (68), Expect = 4.5
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 542 WVWK---SLARGWPRGLSKLQVPVPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGASSED 598
W WK SL RG PR + + P E + + ++++ +G
Sbjct: 92 WGWKAASSLTRGEPRTIGSPEAGFPPASSRSSEWKRCPRSFSSKELSECRWAMLGGCGAH 151
Query: 599 VE-GGPSREGALQEGATAQGQPHSGPLLSQPVVAAAGGRDG 638
+ G R G GA A P GP+LS A A R G
Sbjct: 152 LRRGAEGRRG----GALAVQLPAPGPVLSCSRFAPAAARSG 188
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 30.8 bits (68), Expect = 4.5
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 563 PTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGA-SSEDVEGGPSREGALQEGATAQGQPHS 621
P + +EAEE K G+D A A GA +E EGG R + Q S
Sbjct: 844 PVKSECTEEAEEGPAK--GKDAEAAEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSS 901
Query: 622 GPLLSQPVVAAAGGRDGRML 641
+ V A GG R+L
Sbjct: 902 ATCSADEVDEAEGGDKNRLL 921
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 30.8 bits (68), Expect = 4.5
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 563 PTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGA-SSEDVEGGPSREGALQEGATAQGQPHS 621
P + +EAEE K G+D A A GA +E EGG R + Q S
Sbjct: 861 PVKSECTEEAEEGPAK--GKDAEAAEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSS 918
Query: 622 GPLLSQPVVAAAGGRDGRML 641
+ V A GG R+L
Sbjct: 919 ATCSADEVDEAEGGDKNRLL 938
>gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens]
Length = 439
Score = 30.8 bits (68), Expect = 4.5
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 440 RRKALRRNPSFKPAPALSA----AGTPQLASVGEGAVIPWKSEAEE----GAGNATGEDP 491
RR+ALRR P + AP AG P+ A +GE + E EE GA GE+
Sbjct: 110 RRRALRRRPGPRRAPRAHLPPPHAGWPEPADLGEEEPMLGLGEEEEEEETGAAEGAGEEA 169
Query: 492 PAPG 495
G
Sbjct: 170 EEAG 173
>gi|6912492 mitogen-activated protein kinase 8 interacting protein 2
isoform 1 [Homo sapiens]
Length = 824
Score = 30.8 bits (68), Expect = 4.5
Identities = 46/177 (25%), Positives = 65/177 (36%), Gaps = 17/177 (9%)
Query: 476 KSEAEEGAGNAT-----GEDPPAPGELLPLRMPLSRWQRRLRRAARRQVLSGHLPFCRFR 530
+ E EEG G G + PAPG L+P P + R R G
Sbjct: 98 EEEEEEGDGEGQEGGDPGSEAPAPGPLIP--SPSVEEPHKHRPTTLRLTTLGAQDSLNNN 155
Query: 531 LRYPSLSPSAFWVWKSLARGWPRGLSKLQVPVPT--LGKGGQEAEEKQEKEAGRDVTAVM 588
+ + P A W +L P L +L P+P G GG ++ + + + A
Sbjct: 156 GGFDLVRP-ASWQETALCSPAPEALRELPGPLPATDTGPGGAQSPVRPGCDCEGNRPAEP 214
Query: 589 APPVGASSEDVEGGPSREGALQEGAT-AQGQPHSGPLLSQP---VVAAAGGRDGRML 641
P G S P E L+ ++ +G S LS P A G R GRM+
Sbjct: 215 PAPGGTSP---SSDPGIEADLRSRSSGGRGGRRSSQELSSPGSDSEDAGGARLGRMI 268
>gi|7706537 mitogen-activated protein kinase 8 interacting protein 2
isoform 2 [Homo sapiens]
Length = 797
Score = 30.8 bits (68), Expect = 4.5
Identities = 46/177 (25%), Positives = 65/177 (36%), Gaps = 17/177 (9%)
Query: 476 KSEAEEGAGNAT-----GEDPPAPGELLPLRMPLSRWQRRLRRAARRQVLSGHLPFCRFR 530
+ E EEG G G + PAPG L+P P + R R G
Sbjct: 71 EEEEEEGDGEGQEGGDPGSEAPAPGPLIP--SPSVEEPHKHRPTTLRLTTLGAQDSLNNN 128
Query: 531 LRYPSLSPSAFWVWKSLARGWPRGLSKLQVPVPT--LGKGGQEAEEKQEKEAGRDVTAVM 588
+ + P A W +L P L +L P+P G GG ++ + + + A
Sbjct: 129 GGFDLVRP-ASWQETALCSPAPEALRELPGPLPATDTGPGGAQSPVRPGCDCEGNRPAEP 187
Query: 589 APPVGASSEDVEGGPSREGALQEGAT-AQGQPHSGPLLSQP---VVAAAGGRDGRML 641
P G S P E L+ ++ +G S LS P A G R GRM+
Sbjct: 188 PAPGGTSP---SSDPGIEADLRSRSSGGRGGRRSSQELSSPGSDSEDAGGARLGRMI 241
>gi|148747556 PIN2-interacting protein 1 [Homo sapiens]
Length = 328
Score = 30.4 bits (67), Expect = 5.8
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 539 SAFWVWKSLARGWPRGLSKLQVPVPTLGKGGQEAEEKQEKE-----AGRDVTAVMAPPVG 593
SAF + + A+ +K QVPVP + E K+ K+ G+DV + + P
Sbjct: 174 SAFTIQEYFAKRMAALKNKPQVPVPGSDISETQVERKRGKKRNKEATGKDVESYLQP--- 230
Query: 594 ASSEDVEGGPSREGALQEGATAQGQPHS----GPLLSQPVVAAA 633
+ EG P R A + A + P GP Q A+A
Sbjct: 231 KAKRHTEGKPERAEAQERVAKKKSAPAEEQLRGPCWDQSSKASA 274
>gi|239752675 PREDICTED: hypothetical protein XP_002345422 [Homo
sapiens]
Length = 247
Score = 30.4 bits (67), Expect = 5.8
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 542 WVWK---SLARGWPRGLSKLQVPVPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGASSED 598
W WK SL RG PR + + P E + + ++++ +G
Sbjct: 92 WGWKAASSLTRGEPRTIGSPEAGFPPASSRSSEWKRCPRSFSSKELSECRWAMLGGCGAH 151
Query: 599 VE-GGPSREGALQEGATAQGQPHSGPLLSQPVVAAAGGRDG 638
+ G R G GA A P GP+LS A A R G
Sbjct: 152 MRRGAEGRRG----GALAVQLPAPGPVLSCNRFAPAAARSG 188
>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
sapiens]
Length = 193
Score = 30.4 bits (67), Expect = 5.8
Identities = 25/91 (27%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 558 LQVPVPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGASSEDVEGG----------PSREG 607
LQ+ VP G G+E Q R P S + G P
Sbjct: 35 LQLQVPLSGAEGKELLAAQAAHRPRQQQRQQQRPRPRSPDPAARGQHVPELRSRKPGPAA 94
Query: 608 ALQEGATAQGQPHSGPLLSQPVVAAAGGRDG 638
+EG G+P PLL P V G R G
Sbjct: 95 RTEEGGDVTGRPWQPPLLPPPGVPTPGNRGG 125
>gi|239746974 PREDICTED: hypothetical protein XP_002343900 [Homo
sapiens]
Length = 399
Score = 30.4 bits (67), Expect = 5.8
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 416 NTLVPYRCFKRRFPGISRSTYYNWRRKALRRNPSFKPAPALSAAGTPQLASVGEGAVIPW 475
N + RC F G+ R +++ + + S A + L S+G+ AV PW
Sbjct: 90 NVVFVPRCSGEEFLGLGR--VFHFPEQEGQMVESVAGALGVGLRRVCWLRSIGQ-AVQPW 146
Query: 476 KSEAE-EGAGNATGEDPPAPGE------LLPLRMPLSRWQRRLRRAARRQVLSG 522
+ G +G D PAPGE L L WQ R RR++L G
Sbjct: 147 VEAVRYQSLGVFSGRDQPAPGEESFEVWLDHTTEMLHVWQGVSERERRRRLLEG 200
>gi|239746972 PREDICTED: hypothetical protein XP_002343899 [Homo
sapiens]
Length = 399
Score = 30.4 bits (67), Expect = 5.8
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 416 NTLVPYRCFKRRFPGISRSTYYNWRRKALRRNPSFKPAPALSAAGTPQLASVGEGAVIPW 475
N + RC F G+ R +++ + + S A + L S+G+ AV PW
Sbjct: 90 NVVFVPRCSGEEFLGLGR--VFHFPEQEGQMVESVAGALGVGLRRVCWLRSIGQ-AVQPW 146
Query: 476 KSEAE-EGAGNATGEDPPAPGE------LLPLRMPLSRWQRRLRRAARRQVLSG 522
+ G +G D PAPGE L L WQ R RR++L G
Sbjct: 147 VEAVRCQSLGVFSGRDQPAPGEESFEVWLDHTTEMLHVWQGVSERERRRRLLEG 200
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,259,598
Number of Sequences: 37866
Number of extensions: 1490313
Number of successful extensions: 5349
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 5291
Number of HSP's gapped (non-prelim): 110
length of query: 702
length of database: 18,247,518
effective HSP length: 109
effective length of query: 593
effective length of database: 14,120,124
effective search space: 8373233532
effective search space used: 8373233532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.