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Search of human proteins with 153252110
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153252110 ring finger protein 183 [Homo sapiens]
(192 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153252110 ring finger protein 183 [Homo sapiens] 408 e-114
gi|239740999 PREDICTED: hypothetical protein [Homo sapiens] 76 2e-14
gi|239752655 PREDICTED: hypothetical protein [Homo sapiens] 75 4e-14
gi|239747208 PREDICTED: hypothetical protein [Homo sapiens] 75 4e-14
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 69 2e-12
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 69 2e-12
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 69 2e-12
gi|119220603 ring finger protein 208 [Homo sapiens] 58 4e-09
gi|22749455 ring finger protein 182 [Homo sapiens] 55 3e-08
gi|27734873 ring finger protein 152 [Homo sapiens] 52 2e-07
gi|226442736 ring finger protein 222 [Homo sapiens] 49 2e-06
gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens] 49 2e-06
gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens] 49 2e-06
gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens] 49 2e-06
gi|9506663 ring finger protein 186 [Homo sapiens] 48 4e-06
gi|27436877 tripartite motif-containing 59 [Homo sapiens] 47 1e-05
gi|37622899 ring finger protein 137 [Homo sapiens] 47 1e-05
gi|30023818 tripartite motif protein 50A [Homo sapiens] 46 2e-05
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 44 6e-05
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 44 6e-05
gi|15208660 tripartite motif protein 21 [Homo sapiens] 44 8e-05
gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens] 44 1e-04
gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens] 44 1e-04
gi|124487387 ring finger protein 207 [Homo sapiens] 43 2e-04
gi|56605981 tripartite motif-containing 72 [Homo sapiens] 42 2e-04
gi|5730009 ret finger protein [Homo sapiens] 42 3e-04
gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo ... 42 4e-04
gi|156105697 ring finger and CCCH-type zinc finger domains 2 iso... 42 4e-04
gi|156105699 ring finger and CCCH-type zinc finger domains 2 iso... 42 4e-04
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 41 5e-04
>gi|153252110 ring finger protein 183 [Homo sapiens]
Length = 192
Score = 408 bits (1048), Expect = e-114
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MAEQQGRELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCR 60
MAEQQGRELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCR
Sbjct: 1 MAEQQGRELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCR 60
Query: 61 QPTVLASGQPVTDLPTDTAMLALLRLEPHHVILEGHQLCLKDQPKSRYFLRQPQVYTLDL 120
QPTVLASGQPVTDLPTDTAMLALLRLEPHHVILEGHQLCLKDQPKSRYFLRQPQVYTLDL
Sbjct: 61 QPTVLASGQPVTDLPTDTAMLALLRLEPHHVILEGHQLCLKDQPKSRYFLRQPQVYTLDL 120
Query: 121 GPQPGGQTGPPPDTASATVSTPILIPSHHSLRECFRNPQFRIFAYLMAVILSVTLLLIFS 180
GPQPGGQTGPPPDTASATVSTPILIPSHHSLRECFRNPQFRIFAYLMAVILSVTLLLIFS
Sbjct: 121 GPQPGGQTGPPPDTASATVSTPILIPSHHSLRECFRNPQFRIFAYLMAVILSVTLLLIFS 180
Query: 181 IFWTKQFLWGVG 192
IFWTKQFLWGVG
Sbjct: 181 IFWTKQFLWGVG 192
>gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 75.9 bits (185), Expect = 2e-14
Identities = 61/184 (33%), Positives = 84/184 (45%), Gaps = 26/184 (14%)
Query: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARR----RLLCPLCRQPT-VLA 66
EC +C++ ++N F TPK L C H FC+ECLA L+ P R + CP CRQPT V
Sbjct: 50 ECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPP 109
Query: 67 SGQPV--TDLPTDTAMLALLRLEPHHVILEGHQLCLKDQPKSRYFLRQPQVYTLDLG-PQ 123
+G P T M A LR E V LEG +LC + P + R+P +D+G +
Sbjct: 110 AGAPALCTSRQLQARMPAHLRRE-EPVWLEGTKLCCQPLPTTPG--REPGFVCVDVGLSK 166
Query: 124 PGGQTGPPPDTASATVSTPILIPSHHSLRECFRNPQFRIFAYLMAVILSVTLLLIFSI-F 182
P P D A P L C+ R + ++S LL++F +
Sbjct: 167 PAEPPAPARDPA----------PRRGRLARCWA----RCRDWRRMALVSALLLMLFCVAL 212
Query: 183 WTKQ 186
W Q
Sbjct: 213 WPVQ 216
>gi|239752655 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 74.7 bits (182), Expect = 4e-14
Identities = 61/184 (33%), Positives = 84/184 (45%), Gaps = 26/184 (14%)
Query: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARR----RLLCPLCRQPT-VLA 66
EC +C++ ++N F TPK L C H FC+ECLA L+ P R + CP CRQPT V
Sbjct: 50 ECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPP 109
Query: 67 SGQPV--TDLPTDTAMLALLRLEPHHVILEGHQLCLKDQPKSRYFLRQPQVYTLDLG-PQ 123
+G P T M A LR E V LEG +LC + P + R+P +D+G +
Sbjct: 110 AGAPALCTSRQLQARMPAHLRRE-EPVWLEGTKLCCQPLPTTPG--REPGFVCVDVGLSK 166
Query: 124 PGGQTGPPPDTASATVSTPILIPSHHSLRECFRNPQFRIFAYLMAVILSVTLLLIFSI-F 182
P P D A P L C+ R + ++S LL++F +
Sbjct: 167 PAEPPVPARDPA----------PRRGRLARCWA----RCRDWRRMALVSALLLMLFCVAL 212
Query: 183 WTKQ 186
W Q
Sbjct: 213 WPVQ 216
>gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 74.7 bits (182), Expect = 4e-14
Identities = 61/184 (33%), Positives = 84/184 (45%), Gaps = 26/184 (14%)
Query: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARR----RLLCPLCRQPT-VLA 66
EC +C++ ++N F TPK L C H FC+ECLA L+ P R + CP CRQPT V
Sbjct: 50 ECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAVPP 109
Query: 67 SGQPV--TDLPTDTAMLALLRLEPHHVILEGHQLCLKDQPKSRYFLRQPQVYTLDLG-PQ 123
+G P T M A LR E V LEG +LC + P + R+P +D+G +
Sbjct: 110 AGAPALCTSRQLQARMPAHLRRE-EPVWLEGTKLCCQPLPTTPG--REPGFVCVDVGLSK 166
Query: 124 PGGQTGPPPDTASATVSTPILIPSHHSLRECFRNPQFRIFAYLMAVILSVTLLLIFSI-F 182
P P D A P L C+ R + ++S LL++F +
Sbjct: 167 PAEPPVPARDPA----------PRRGRLARCWA----RCRDWRRMALVSALLLMLFCVAL 212
Query: 183 WTKQ 186
W Q
Sbjct: 213 WPVQ 216
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 68.9 bits (167), Expect = 2e-12
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTP-ARRRLLCPLCRQPTVLASGQP 70
EC +C + F+ F PK LDC H FC+ECLA LSL T + CP+CR PT LA +
Sbjct: 63 ECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCRAPTRLAPRRG 122
Query: 71 VTDLPTDTAML 81
+ LPT + +L
Sbjct: 123 LPALPTQSGLL 133
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 68.9 bits (167), Expect = 2e-12
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTP-ARRRLLCPLCRQPTVLASGQP 70
EC +C + F+ F PK LDC H FC+ECLA LSL T + CP+CR PT LA +
Sbjct: 63 ECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCRAPTRLAPRRG 122
Query: 71 VTDLPTDTAML 81
+ LPT + +L
Sbjct: 123 LPALPTQSGLL 133
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 68.9 bits (167), Expect = 2e-12
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTP-ARRRLLCPLCRQPTVLASGQP 70
EC +C + F+ F PK LDC H FC+ECLA LSL T + CP+CR PT LA +
Sbjct: 63 ECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCRAPTRLAPRRG 122
Query: 71 VTDLPTDTAML 81
+ LPT + +L
Sbjct: 123 LPALPTQSGLL 133
>gi|119220603 ring finger protein 208 [Homo sapiens]
Length = 261
Score = 58.2 bits (139), Expect = 4e-09
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQPV 71
ECP C + +N T P++L C HS C +CL L P + + CP CR+ TVL + +
Sbjct: 142 ECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFISCPTCRRETVLFTDYGL 201
Query: 72 TDLPTDTAMLALL 84
L +T++L+ L
Sbjct: 202 AALAVNTSILSRL 214
>gi|22749455 ring finger protein 182 [Homo sapiens]
Length = 247
Score = 55.5 bits (132), Expect = 3e-08
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 2 AEQQGRELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAH-LSLVTPARRRLLCPLCR 60
AE Q + E EC +C+N +N PK+L+CCH C +CL + + ++CP CR
Sbjct: 10 AESQASD-ELECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPFCR 68
Query: 61 QPTVLASGQPVTDLPTDTAMLALL 84
T L + V+ LP D +L L
Sbjct: 69 FETCLPDDE-VSSLPDDNNILVNL 91
>gi|27734873 ring finger protein 152 [Homo sapiens]
Length = 203
Score = 52.4 bits (124), Expect = 2e-07
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQPV 71
EC +C+N ++ PK+LDC H+ C CL + +++ + CP CR T L G V
Sbjct: 11 ECQICFNYYSPR-RRPKLLDCKHTCCSVCLQQMRT---SQKDVRCPWCRGVTKLPPGFSV 66
Query: 72 TDLPTDTAMLALLRLEPH 89
+ LP D +LA++ + PH
Sbjct: 67 SQLPDDPEVLAVIAI-PH 83
>gi|226442736 ring finger protein 222 [Homo sapiens]
Length = 220
Score = 49.3 bits (116), Expect = 2e-06
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1 MAEQQGRELE-AECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVT----PARRRLL 55
M+E + ++ +ECPVC+ F + + L C H FC +CL L T +R L+
Sbjct: 1 MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
Query: 56 CPLCRQPTVLA 66
CP+CR T L+
Sbjct: 61 CPICRYVTFLS 71
>gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 49.3 bits (116), Expect = 2e-06
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1 MAEQQGRELE-AECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVT----PARRRLL 55
M+E + ++ +ECPVC+ F + + L C H FC +CL L T +R L+
Sbjct: 1 MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
Query: 56 CPLCRQPTVLA 66
CP+CR T L+
Sbjct: 61 CPICRYVTFLS 71
>gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 49.3 bits (116), Expect = 2e-06
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1 MAEQQGRELE-AECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVT----PARRRLL 55
M+E + ++ +ECPVC+ F + + L C H FC +CL L T +R L+
Sbjct: 1 MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
Query: 56 CPLCRQPTVLA 66
CP+CR T L+
Sbjct: 61 CPICRYVTFLS 71
>gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 49.3 bits (116), Expect = 2e-06
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1 MAEQQGRELE-AECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVT----PARRRLL 55
M+E + ++ +ECPVC+ F + + L C H FC +CL L T +R L+
Sbjct: 1 MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
Query: 56 CPLCRQPTVLA 66
CP+CR T L+
Sbjct: 61 CPICRYVTFLS 71
>gi|9506663 ring finger protein 186 [Homo sapiens]
Length = 227
Score = 48.1 bits (113), Expect = 4e-06
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 8 ELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLAS 67
E + EC VC P++ PK+L C H+FC CL L V + CPLCR+ T +
Sbjct: 35 ECDLECLVCREPYSCP-RLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAVPG 93
Query: 68 G 68
G
Sbjct: 94 G 94
>gi|27436877 tripartite motif-containing 59 [Homo sapiens]
Length = 403
Score = 47.0 bits (110), Expect = 1e-05
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 8 ELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVT-------PARRRLLCPLCR 60
E E CP+C++ F + P++L C H+FC CL ++ + P R L CP CR
Sbjct: 5 EEELTCPICYSIFED----PRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCR 60
Query: 61 QPTVLASGQPVTDLPTDTAMLALL 84
T +A + LP + A+ A++
Sbjct: 61 SITEIAP-TGIESLPVNFALRAII 83
>gi|37622899 ring finger protein 137 [Homo sapiens]
Length = 485
Score = 46.6 bits (109), Expect = 1e-05
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 10 EAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRR--LLCPLCRQPTVLAS 67
E CP+C P +DC HSFC CL+ L + + CPLCR P +
Sbjct: 13 EVACPICMT----FLREPMSIDCGHSFCHSCLSGLWEIPGESQNWGYTCPLCRAPVQPRN 68
Query: 68 GQPVTDLPTDTAMLALLRLEPHHVILEGHQLCLKDQPKSRYFLRQ 112
+P L + LLRL P + L+G LC + K + F ++
Sbjct: 69 LRPNWQLANVVEKVRLLRLHP-GMGLKG-DLCERHGEKLKMFCKE 111
>gi|30023818 tripartite motif protein 50A [Homo sapiens]
Length = 487
Score = 46.2 bits (108), Expect = 2e-05
Identities = 34/99 (34%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQPV 71
+CP+C F P ML C HS+C CL LS A R CP+CRQ +S P
Sbjct: 15 QCPICLEVFKE----PLMLQCGHSYCKGCLVSLSCHLDAELR--CPVCRQAVDGSSSLPN 68
Query: 72 TDLPTDTAMLALLRL--EPHHVILEGHQ-----LCLKDQ 103
L ++ LRL +P + H+ C KDQ
Sbjct: 69 VSL---ARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQ 104
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 44.3 bits (103), Expect = 6e-05
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQPV 71
ECP+C F PK+L C H+ C +CL L+ + + CP C + T + S +
Sbjct: 19 ECPICMESFTEEQLRPKLLHCGHTICRQCLE--KLLASSINGVRCPFCSKITRITSLTQL 76
Query: 72 TD 73
TD
Sbjct: 77 TD 78
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 44.3 bits (103), Expect = 6e-05
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQPV 71
ECP+C F PK+L C H+ C +CL L+ + + CP C + T + S +
Sbjct: 19 ECPICMESFTEEQLRPKLLHCGHTICRQCLE--KLLASSINGVRCPFCSKITRITSLTQL 76
Query: 72 TD 73
TD
Sbjct: 77 TD 78
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 43.9 bits (102), Expect = 8e-05
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 10 EAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQ 69
E CP+C +PF P ++C HSFC EC++ + + +CP+CRQ +L + +
Sbjct: 13 EVTCPICLDPFVE----PVSIECGHSFCQECISQVGKGGGS----VCPVCRQRFLLKNLR 64
Query: 70 P 70
P
Sbjct: 65 P 65
>gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens]
Length = 729
Score = 43.5 bits (101), Expect = 1e-04
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQPV 71
ECPVC F T K+L C H+FC CL V A + L CP CR P +
Sbjct: 11 ECPVC---FEKLDVTAKVLPCQHTFCKPCLQR---VFKAHKELRCPECRTPVF----SNI 60
Query: 72 TDLPTDTAMLALL 84
LP + ++ LL
Sbjct: 61 EALPANLLLVRLL 73
>gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens]
Length = 888
Score = 43.5 bits (101), Expect = 1e-04
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQPV 71
ECPVC + + K+L C H+FC CL + +R L CP CR T++ SG V
Sbjct: 11 ECPVCLERLDAS---AKVLPCQHTFCKRCLLG---IVGSRNELRCPECR--TLVGSG--V 60
Query: 72 TDLPTDTAMLALL 84
+LP++ ++ LL
Sbjct: 61 EELPSNILLVRLL 73
>gi|124487387 ring finger protein 207 [Homo sapiens]
Length = 634
Score = 42.7 bits (99), Expect = 2e-04
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 13 CPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVL--ASGQP 70
CP+C + + P +LDC H FC CL + RL CPLC+ TVL SG P
Sbjct: 25 CPLC----HVQYERPCLLDCFHDFCAGCLRGRA----TDGRLTCPLCQHQTVLKGPSGLP 76
Query: 71 VTD 73
D
Sbjct: 77 PVD 79
>gi|56605981 tripartite motif-containing 72 [Homo sapiens]
Length = 477
Score = 42.4 bits (98), Expect = 2e-04
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 10 EAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPT 63
E CP+C F+ P +C HSFC CL ++ A +LCP C+ PT
Sbjct: 11 ELSCPLCLQLFD----APVTAECGHSFCRACLGRVAGEPAADGTVLCPCCQAPT 60
>gi|5730009 ret finger protein [Homo sapiens]
Length = 513
Score = 42.0 bits (97), Expect = 3e-04
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 10 EAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQ 69
E CPVC F P MLDC H+ C CLA A + CP CR+ +
Sbjct: 13 ETTCPVCLQYFAE----PMMLDCGHNICCACLAR--CWGTAETNVSCPQCRETFPQRHMR 66
Query: 70 PVTDLPTDTAMLALLRLE 87
P L T ++ LR E
Sbjct: 67 PNRHLANVTQLVKQLRTE 84
>gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo
sapiens]
Length = 1045
Score = 41.6 bits (96), Expect = 4e-04
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 10 EAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQP 62
+++CP+C + F+N + + C H FC C+ S + + CPLC+QP
Sbjct: 100 DSKCPICLDRFDNVSYLDR---CLHKFCFRCVQEWS-----KNKAECPLCKQP 144
Score = 37.7 bits (86), Expect = 0.006
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 4 QQGRELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARR---RLLCPLCR 60
Q+ + +AECP+C PF++ FH+ + D + + + S VTP RR R R
Sbjct: 129 QEWSKNKAECPLCKQPFDSIFHSVRAEDDFKEYVLRPSYNGSFVTPDRRFRYRTTLTRER 188
Query: 61 QPTVLASGQPV---TDLPTDTAML 81
+V + PV T P D+ +L
Sbjct: 189 NASVYSPSGPVNRRTTTPPDSGVL 212
>gi|156105697 ring finger and CCCH-type zinc finger domains 2
isoform 1 [Homo sapiens]
Length = 1191
Score = 41.6 bits (96), Expect = 4e-04
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 13 CPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQPVT 72
CP+C+N F+ H P L C H+ C CL L R CP + A +
Sbjct: 14 CPICYNEFDENVHKPISLGCSHTVCKTCLNKL-------HRKACPFDQ----TAINTDID 62
Query: 73 DLPTDTAMLALLRLE-PHH 90
LP + A+L L+ + P H
Sbjct: 63 VLPVNFALLQLVGAQVPDH 81
>gi|156105699 ring finger and CCCH-type zinc finger domains 2
isoform 2 [Homo sapiens]
Length = 1064
Score = 41.6 bits (96), Expect = 4e-04
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 13 CPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQPVT 72
CP+C+N F+ H P L C H+ C CL L R CP + A +
Sbjct: 14 CPICYNEFDENVHKPISLGCSHTVCKTCLNKL-------HRKACPFDQ----TAINTDID 62
Query: 73 DLPTDTAMLALLRLE-PHH 90
LP + A+L L+ + P H
Sbjct: 63 VLPVNFALLQLVGAQVPDH 81
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo
sapiens]
Length = 744
Score = 41.2 bits (95), Expect = 5e-04
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 13 CPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVL 65
C +C + N PK+L C H+FC CL + + L CP+CRQ ++L
Sbjct: 23 CSICLERYKN----PKVLPCLHTFCERCLQ--NYIPAHSLTLSCPVCRQTSIL 69
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.140 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,059,254
Number of Sequences: 37866
Number of extensions: 470641
Number of successful extensions: 2619
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 174
Number of HSP's that attempted gapping in prelim test: 2447
Number of HSP's gapped (non-prelim): 281
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.