Guide to the Human Genome
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Name: FAM54B Sequence: fasta or formatted (292aa) NCBI GI: 153251748
Description:

hypothetical protein LOC56181 isoform a

Referenced in:

Bone and Related Tissues

Other entries for this name:
alt mRNA [292aa] hypothetical protein LOC56181 isoform a
alt mRNA [292aa] hypothetical protein LOC56181 isoform a
alt prot [205aa] hypothetical protein LOC56181 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         27           2
 C cysteine            2.7          8           2
 D aspartate           5.5         16           2
 E glutamate           7.9         23           3
 F phenylalanine       2.7          8           1
 G glycine             2.7          8           1
 H histidine           2.1          6           1
 I isoleucine          4.8         14           1
 K lysine              5.1         15           2
 L leucine            10.6         31           2
 M methionine          2.1          6           2
 N asparagine          2.7          8           1
 P proline             8.2         24           2
 Q glutamine           2.1          6           1
 R arginine            6.5         19           2
 S serine             12.7         37           3
 T threonine           5.1         15           2
 V valine              5.8         17           2
 W tryptophan          1.0          3           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC56181 isoform a 
FAM54B                1.000   hypothetical protein LOC56181 isoform a 
FAM54B                1.000   hypothetical protein LOC56181 isoform a 
FAM54B                0.500   hypothetical protein LOC56181 isoform b 
FAM54A                0.130   DUF729 domain containing 1 
FAM54A                0.130   DUF729 domain containing 1 
MTFR1                 0.119   mitochondrial fission regulator 1 isoform 3 
MTFR1                 0.119   mitochondrial fission regulator 1 isoform 1 
MTFR1                 0.067   mitochondrial fission regulator 1 isoform 2 
CDC42BPG              0.016   CDC42 binding protein kinase gamma (DMPK-like) [Hom...
LOC100133408          0.016   PREDICTED: similar to mucin 
NUP153                0.014   nucleoporin 153kDa 
LMNA                  0.014   lamin A/C isoform 3 
LMNA                  0.014   lamin A/C isoform 2 
LMNA                  0.014   lamin A/C isoform 1 precursor 
ODZ3                  0.013   odz, odd Oz/ten-m homolog 3 
JUND                  0.011   jun D proto-oncogene 
LOC100133761          0.011   PREDICTED: similar to Mucin-6, partial 
KIF1A                 0.011   axonal transport of synaptic vesicles 
KCNC2                 0.011   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.011   Shaw-related voltage-gated potassium channel protein...
KCNC2                 0.011   Shaw-related voltage-gated potassium channel protein...
ODZ1                  0.009   odz, odd Oz/ten-m homolog 1 isoform 3 
ODZ1                  0.009   odz, odd Oz/ten-m homolog 1 isoform 2 
ODZ1                  0.009   odz, odd Oz/ten-m homolog 1 isoform 1 
TCF7L2                0.009   transcription factor 7-like 2 isoform 3 
MTRR                  0.009   methionine synthase reductase isoform 1 
MTRR                  0.009   methionine synthase reductase isoform 2 
VASP                  0.009   vasodilator-stimulated phosphoprotein 
STIL                  0.009   SCL/TAL1 interrupting locus isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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