Guide to the Human Genome
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Name: C3orf23 Sequence: fasta or formatted (496aa) NCBI GI: 150378505
Description:

hypothetical protein LOC285343 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {70aa} hypothetical protein LOC285343 isoform 2
alt prot {70aa} hypothetical protein LOC285343 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         18           1
 C cysteine            2.0         10           2
 D aspartate           4.6         23           1
 E glutamate           6.5         32           2
 F phenylalanine       4.8         24           2
 G glycine             3.8         19           2
 H histidine           4.0         20           3
 I isoleucine          4.8         24           2
 K lysine              6.7         33           2
 L leucine            13.9         69           2
 M methionine          2.6         13           1
 N asparagine          3.8         19           2
 P proline             4.6         23           1
 Q glutamine           5.2         26           2
 R arginine            6.2         31           2
 S serine              8.9         44           3
 T threonine           4.4         22           2
 V valine              4.2         21           2
 W tryptophan          1.8          9           1
 Y tyrosine            3.2         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC285343 isoform 1 
C3orf23               0.101   hypothetical protein LOC285343 isoform 2 
C3orf23               0.101   hypothetical protein LOC285343 isoform 2 
PEX6                  0.012   peroxisomal biogenesis factor 6 
ASH1L                 0.008   absent, small, or homeotic 1-like 
CCDC144B              0.007   coiled-coil domain containing 144B 
USP44                 0.006   ubiquitin thiolesterase 44 
USP44                 0.006   ubiquitin thiolesterase 44 
CCDC18                0.006   sarcoma antigen NY-SAR-41 
MYH10                 0.005   myosin, heavy polypeptide 10, non-muscle 
KIAA1841              0.005   KIAA1841 protein isoform a 
KIAA1841              0.005   KIAA1841 protein isoform b 
TRIP11                0.005   thyroid hormone receptor interactor 11 
CTAGE5                0.005   CTAGE family, member 5 isoform 3 
CTAGE5                0.005   CTAGE family, member 5 isoform 1 
CTAGE5                0.005   CTAGE family, member 5 isoform 4 
CTAGE5                0.005   CTAGE family, member 5 isoform 2 
SSH2                  0.005   slingshot 2 
CTAGE1                0.005   cutaneous T-cell lymphoma-associated antigen 1 isofo...
KIF20B                0.005   M-phase phosphoprotein 1 
CCDC144A              0.005   coiled-coil domain containing 144A 
DNHD1                 0.005   dynein heavy chain domain 1 isoform 1 
ECE2                  0.005   endothelin converting enzyme 2 isoform E 
ECE2                  0.005   endothelin converting enzyme 2 isoform D 
ECE2                  0.005   endothelin converting enzyme 2 isoform B 
ECE2                  0.005   endothelin converting enzyme 2 isoform A 
DNHD1                 0.005   dynein heavy chain domain 1 isoform 2 
CCDC67                0.005   coiled-coil domain containing 67 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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