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Search of human proteins with 11024714
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11024714 ubiquitin B precursor [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11024714 ubiquitin B precursor [Homo sapiens] 448 e-126
gi|67191208 ubiquitin C [Homo sapiens] 444 e-125
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 151 4e-37
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 151 4e-37
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 151 5e-37
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 151 5e-37
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens] 134 8e-32
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens] 134 8e-32
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens] 134 8e-32
gi|5453760 neural precursor cell expressed, developmentally down... 96 2e-20
gi|222352096 ubiquitin D [Homo sapiens] 84 8e-17
gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens] 77 1e-14
gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens] 72 3e-13
gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens] 72 3e-13
gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo... 71 9e-13
gi|7657667 ubiquitin-like 4 [Homo sapiens] 63 2e-10
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi... 52 6e-07
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i... 51 7e-07
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i... 51 7e-07
gi|169790971 parkin isoform 2 [Homo sapiens] 50 1e-06
gi|169790969 parkin isoform 1 [Homo sapiens] 50 1e-06
gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30... 50 2e-06
gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [H... 49 3e-06
gi|44662819 ubiquitin-like 4B [Homo sapiens] 49 5e-06
gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom... 48 6e-06
gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo... 48 6e-06
gi|13376439 ubiquitin domain containing 1 [Homo sapiens] 48 6e-06
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 47 1e-05
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 47 1e-05
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 47 1e-05
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 448 bits (1152), Expect = e-126
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180
Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 444 bits (1143), Expect = e-125
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348
Query: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408
Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456
Score = 444 bits (1143), Expect = e-125
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 424
Query: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 425 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 484
Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 485 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532
Score = 444 bits (1143), Expect = e-125
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 441 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 500
Query: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 501 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 560
Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 561 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608
Score = 444 bits (1143), Expect = e-125
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 517 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 576
Query: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 577 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 636
Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 637 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684
Score = 441 bits (1135), Expect = e-124
Identities = 227/228 (99%), Positives = 227/228 (99%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180
Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
KIQDKEGIP DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 441 bits (1135), Expect = e-124
Identities = 227/228 (99%), Positives = 227/228 (99%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP DQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLI 196
Query: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256
Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 441 bits (1135), Expect = e-124
Identities = 227/228 (99%), Positives = 227/228 (99%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP DQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYN 212
Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 272
Query: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 273 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 332
Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 298 bits (763), Expect = 3e-81
Identities = 152/153 (99%), Positives = 153/153 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 593 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 652
Query: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 153
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 653 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 685
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 151 bits (382), Expect = 4e-37
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGM 77
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 151 bits (382), Expect = 4e-37
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGM 153
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 151 bits (381), Expect = 5e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 151 bits (382), Expect = 4e-37
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGM 77
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 151 bits (382), Expect = 4e-37
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGM 153
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 151 bits (381), Expect = 5e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 151 bits (381), Expect = 5e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 151 bits (381), Expect = 5e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 151 bits (381), Expect = 5e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 151 bits (381), Expect = 5e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 151 bits (381), Expect = 5e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 151 bits (381), Expect = 5e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 134 bits (336), Expect = 8e-32
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 61 IQKESTLHLVLRLRG 75
IQKE TLHL+LRL G
Sbjct: 129 IQKEPTLHLLLRLCG 143
Score = 134 bits (336), Expect = 8e-32
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 137 IQKESTLHLVLRLRG 151
IQKE TLHL+LRL G
Sbjct: 129 IQKEPTLHLLLRLCG 143
Score = 134 bits (336), Expect = 8e-32
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 213 IQKESTLHLVLRLRG 227
IQKE TLHL+LRL G
Sbjct: 129 IQKEPTLHLLLRLCG 143
>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 134 bits (336), Expect = 8e-32
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 61 IQKESTLHLVLRLRG 75
IQKE TLHL+LRL G
Sbjct: 129 IQKEPTLHLLLRLCG 143
Score = 134 bits (336), Expect = 8e-32
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 137 IQKESTLHLVLRLRG 151
IQKE TLHL+LRL G
Sbjct: 129 IQKEPTLHLLLRLCG 143
Score = 134 bits (336), Expect = 8e-32
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 213 IQKESTLHLVLRLRG 227
IQKE TLHL+LRL G
Sbjct: 129 IQKEPTLHLLLRLCG 143
>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 134 bits (336), Expect = 8e-32
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 61 IQKESTLHLVLRLRG 75
IQKE TLHL+LRL G
Sbjct: 129 IQKEPTLHLLLRLCG 143
Score = 134 bits (336), Expect = 8e-32
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 137 IQKESTLHLVLRLRG 151
IQKE TLHL+LRL G
Sbjct: 129 IQKEPTLHLLLRLCG 143
Score = 134 bits (336), Expect = 8e-32
Identities = 68/75 (90%), Positives = 70/75 (93%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 213 IQKESTLHLVLRLRG 227
IQKE TLHL+LRL G
Sbjct: 129 IQKEPTLHLLLRLCG 143
>gi|5453760 neural precursor cell expressed, developmentally
down-regulated 8 [Homo sapiens]
Length = 81
Score = 96.3 bits (238), Expect = 2e-20
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 61 IQKESTLHLVLRLRGG 76
I S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76
Score = 96.3 bits (238), Expect = 2e-20
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 137 IQKESTLHLVLRLRGG 152
I S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76
Score = 96.3 bits (238), Expect = 2e-20
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 213 IQKESTLHLVLRLRGG 228
I S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76
>gi|222352096 ubiquitin D [Homo sapiens]
Length = 165
Score = 84.3 bits (207), Expect = 8e-17
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
Query: 63 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 116
KE T+HL L++ + +F+ K L+V S ++ VKA I+ K GI P+
Sbjct: 70 KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129
Query: 117 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Q + GK+LEDG+ ++DY I+K + L L GG
Sbjct: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165
Score = 84.3 bits (207), Expect = 8e-17
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 79 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 138
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
Query: 139 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192
KE T+HL L++ + +F+ K L+V S ++ VKA I+ K GI P+
Sbjct: 70 KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129
Query: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Q + GK+LEDG+ ++DY I+K + L L GG
Sbjct: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165
>gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
Length = 165
Score = 77.0 bits (188), Expect = 1e-14
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 133
G + VK L G + + S ++ +KA+I K G+ QQRL +G L+D L+
Sbjct: 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192
+ ST+ LV+ + + I V+ G++ T EV + T+ ++K ++ EG+ D
Sbjct: 62 SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
L F GK LED L +Y ++ ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157
Score = 75.1 bits (183), Expect = 5e-14
Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 3/151 (1%)
Query: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQ 62
VK L G + + S ++ +KA+I K G+ QQRL +G L+D L+ +
Sbjct: 7 VKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLG 66
Query: 63 KESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
ST+ LV+ + + I V+ G++ T EV + T+ ++K ++ EG+ D L F
Sbjct: 67 PGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126
Query: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
GK LED L +Y ++ ST+ + LRLRGG
Sbjct: 127 EGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157
Score = 53.9 bits (128), Expect = 1e-07
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+ I V+ G++ T EV + T+ ++K ++ EG+ D L F GK LED L +Y
Sbjct: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
Query: 61 IQKESTLHLVLRLRGG 76
++ ST+ + LRLRGG
Sbjct: 142 LKPLSTVFMNLRLRGG 157
>gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens]
Length = 727
Score = 72.4 bits (176), Expect = 3e-13
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M++F++TLTG L V P +T+ +VKAKI+ EGIP +Q LI+ +LE+ L+DYN
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 61 IQKESTLHLVLRLRGG 76
I + TL LVL +RGG
Sbjct: 88 ISEGCTLKLVLAMRGG 103
Score = 72.4 bits (176), Expect = 3e-13
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
M++F++TLTG L V P +T+ +VKAKI+ EGIP +Q LI+ +LE+ L+DYN
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 137 IQKESTLHLVLRLRGG 152
I + TL LVL +RGG
Sbjct: 88 ISEGCTLKLVLAMRGG 103
Score = 72.4 bits (176), Expect = 3e-13
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
M++F++TLTG L V P +T+ +VKAKI+ EGIP +Q LI+ +LE+ L+DYN
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 213 IQKESTLHLVLRLRGG 228
I + TL LVL +RGG
Sbjct: 88 ISEGCTLKLVLAMRGG 103
>gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens]
Length = 727
Score = 72.4 bits (176), Expect = 3e-13
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M++F++TLTG L V P +T+ +VKAKI+ EGIP +Q LI+ +LE+ L+DYN
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 61 IQKESTLHLVLRLRGG 76
I + TL LVL +RGG
Sbjct: 88 ISEGCTLKLVLAMRGG 103
Score = 72.4 bits (176), Expect = 3e-13
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
M++F++TLTG L V P +T+ +VKAKI+ EGIP +Q LI+ +LE+ L+DYN
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 137 IQKESTLHLVLRLRGG 152
I + TL LVL +RGG
Sbjct: 88 ISEGCTLKLVLAMRGG 103
Score = 72.4 bits (176), Expect = 3e-13
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
M++F++TLTG L V P +T+ +VKAKI+ EGIP +Q LI+ +LE+ L+DYN
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 213 IQKESTLHLVLRLRGG 228
I + TL LVL +RGG
Sbjct: 88 ISEGCTLKLVLAMRGG 103
>gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo
sapiens]
Length = 514
Score = 70.9 bits (172), Expect = 9e-13
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 56 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 115
+S +N+++ +HL + RG L V P + I VK KI+ G
Sbjct: 343 ISSWNVKRARDIHLTVEQRGYPDF----------NLIVNPYEPIRKVKEKIRRTRGYS-G 391
Query: 116 QQRLIF----AGKQLEDGR-TLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 170
QRL F + +QL R +L+ Y I + ++L+ + +Q+FVK G + +
Sbjct: 392 LQRLSFQVPGSERQLLSSRCSLAKYGIFSHTHIYLLETIPSEIQVFVKNPDGGSYAYAIN 451
Query: 171 PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 221
P+ I +K +I+D++G+P QQ+L F G+ L+D L Y IQ TL L
Sbjct: 452 PNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLIL 502
Score = 65.5 bits (158), Expect = 4e-11
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF----AGKQLEDGR-TLSDYNIQKESTLHL 69
L V P + I VK KI+ G QRL F + +QL R +L+ Y I + ++L
Sbjct: 368 LIVNPYEPIRKVKEKIRRTRGYS-GLQRLSFQVPGSERQLLSSRCSLAKYGIFSHTHIYL 426
Query: 70 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 129
+ + +Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D
Sbjct: 427 LETIPSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW 486
Query: 130 RTLSDYNIQKESTLHLVLRLRGGMQIF 156
L Y IQ T L+L + G +F
Sbjct: 487 LGLGIYGIQDSDT--LILSKKKGEALF 511
Score = 51.2 bits (121), Expect = 7e-07
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D L Y
Sbjct: 434 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 493
Query: 61 IQKESTLHLVLRLRGGMQIF 80
IQ T L+L + G +F
Sbjct: 494 IQDSDT--LILSKKKGEALF 511
>gi|7657667 ubiquitin-like 4 [Homo sapiens]
Length = 157
Score = 62.8 bits (151), Expect = 2e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
Query: 61 IQKESTLHLVLR 72
I S L+LV++
Sbjct: 61 IGPNSKLNLVVK 72
Score = 62.8 bits (151), Expect = 2e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
Query: 137 IQKESTLHLVLR 148
I S L+LV++
Sbjct: 61 IGPNSKLNLVVK 72
Score = 62.8 bits (151), Expect = 2e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
Query: 213 IQKESTLHLVLR 224
I S L+LV++
Sbjct: 61 IGPNSKLNLVVK 72
>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
sapiens]
Length = 409
Score = 51.6 bits (122), Expect = 6e-07
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
MQ+ +KTL +T ++++P +T++ +K KI+ ++G P Q+LI+AGK L D L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 58 DYNIQKES 65
+Y I +++
Sbjct: 61 EYKIDEKN 68
Score = 51.6 bits (122), Expect = 6e-07
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
MQ+ +KTL +T ++++P +T++ +K KI+ ++G P Q+LI+AGK L D L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 134 DYNIQKES 141
+Y I +++
Sbjct: 61 EYKIDEKN 68
Score = 51.6 bits (122), Expect = 6e-07
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
MQ+ +KTL +T ++++P +T++ +K KI+ ++G P Q+LI+AGK L D L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 210 DYNIQKES 217
+Y I +++
Sbjct: 61 EYKIDEKN 68
>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
isoform 1 [Homo sapiens]
Length = 793
Score = 51.2 bits (121), Expect = 7e-07
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 1 MQIFVKTLTGK-TITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 58
M I V+T+ G+ T T++ + +E ++ KIQ+ + P QRL + GKQ+EDG TL D
Sbjct: 1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60
Query: 59 YNIQKESTLHLVLR 72
Y ++ T+ L++R
Sbjct: 61 YEVRLNDTIQLLVR 74
Score = 51.2 bits (121), Expect = 7e-07
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 77 MQIFVKTLTGK-TITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 134
M I V+T+ G+ T T++ + +E ++ KIQ+ + P QRL + GKQ+EDG TL D
Sbjct: 1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60
Query: 135 YNIQKESTLHLVLR 148
Y ++ T+ L++R
Sbjct: 61 YEVRLNDTIQLLVR 74
Score = 51.2 bits (121), Expect = 7e-07
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 153 MQIFVKTLTGK-TITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210
M I V+T+ G+ T T++ + +E ++ KIQ+ + P QRL + GKQ+EDG TL D
Sbjct: 1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60
Query: 211 YNIQKESTLHLVLR 224
Y ++ T+ L++R
Sbjct: 61 YEVRLNDTIQLLVR 74
>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
isoform 2 [Homo sapiens]
Length = 806
Score = 51.2 bits (121), Expect = 7e-07
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 1 MQIFVKTLTGK-TITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 58
M I V+T+ G+ T T++ + +E ++ KIQ+ + P QRL + GKQ+EDG TL D
Sbjct: 14 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 73
Query: 59 YNIQKESTLHLVLR 72
Y ++ T+ L++R
Sbjct: 74 YEVRLNDTIQLLVR 87
Score = 51.2 bits (121), Expect = 7e-07
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 77 MQIFVKTLTGK-TITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 134
M I V+T+ G+ T T++ + +E ++ KIQ+ + P QRL + GKQ+EDG TL D
Sbjct: 14 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 73
Query: 135 YNIQKESTLHLVLR 148
Y ++ T+ L++R
Sbjct: 74 YEVRLNDTIQLLVR 87
Score = 51.2 bits (121), Expect = 7e-07
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 153 MQIFVKTLTGK-TITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210
M I V+T+ G+ T T++ + +E ++ KIQ+ + P QRL + GKQ+EDG TL D
Sbjct: 14 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 73
Query: 211 YNIQKESTLHLVLR 224
Y ++ T+ L++R
Sbjct: 74 YEVRLNDTIQLLVR 87
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 61 IQKESTLHLVLR 72
+ ++S +H+V R
Sbjct: 61 LDQQSIVHIVQR 72
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 137 IQKESTLHLVLR 148
+ ++S +H+V R
Sbjct: 61 LDQQSIVHIVQR 72
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 213 IQKESTLHLVLR 224
+ ++S +H+V R
Sbjct: 61 LDQQSIVHIVQR 72
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 61 IQKESTLHLVLR 72
+ ++S +H+V R
Sbjct: 61 LDQQSIVHIVQR 72
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 137 IQKESTLHLVLR 148
+ ++S +H+V R
Sbjct: 61 LDQQSIVHIVQR 72
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 213 IQKESTLHLVLR 224
+ ++S +H+V R
Sbjct: 61 LDQQSIVHIVQR 72
>gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30
precursor [Homo sapiens]
Length = 133
Score = 49.7 bits (117), Expect = 2e-06
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
Query: 61 IQKESTLHLVLRLRGG 76
++ +TL + R+ GG
Sbjct: 59 VEALTTLEVAGRMLGG 74
Score = 49.7 bits (117), Expect = 2e-06
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
Query: 137 IQKESTLHLVLRLRGG 152
++ +TL + R+ GG
Sbjct: 59 VEALTTLEVAGRMLGG 74
Score = 49.7 bits (117), Expect = 2e-06
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
Query: 213 IQKESTLHLVLRLRGG 228
++ +TL + R+ GG
Sbjct: 59 VEALTTLEVAGRMLGG 74
>gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [Homo
sapiens]
Length = 802
Score = 49.3 bits (116), Expect = 3e-06
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 1 MQIFVKTLTG-KTITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 58
M I V+T+ G KT T+E V TIE ++ ++ + P+ QRL + GKQLE+G TL D
Sbjct: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60
Query: 59 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 118
Y++ + L++R L G + +E +P N K++ + P Q
Sbjct: 61 YDVGLNDIIQLLVRPD------PDHLPGTSTQIEAKP---CSNSPPKVKKAPRVGPSNQP 111
Query: 119 LIFAGKQLED 128
A +L D
Sbjct: 112 STSARARLID 121
Score = 49.3 bits (116), Expect = 3e-06
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 77 MQIFVKTLTG-KTITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 134
M I V+T+ G KT T+E V TIE ++ ++ + P+ QRL + GKQLE+G TL D
Sbjct: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60
Query: 135 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 194
Y++ + L++R L G + +E +P N K++ + P Q
Sbjct: 61 YDVGLNDIIQLLVRPD------PDHLPGTSTQIEAKP---CSNSPPKVKKAPRVGPSNQP 111
Query: 195 LIFAGKQLED 204
A +L D
Sbjct: 112 STSARARLID 121
Score = 48.9 bits (115), Expect = 4e-06
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 153 MQIFVKTLTG-KTITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210
M I V+T+ G KT T+E V TIE ++ ++ + P+ QRL + GKQLE+G TL D
Sbjct: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60
Query: 211 YNIQKESTLHLVLR 224
Y++ + L++R
Sbjct: 61 YDVGLNDIIQLLVR 74
>gi|44662819 ubiquitin-like 4B [Homo sapiens]
Length = 174
Score = 48.5 bits (114), Expect = 5e-06
Identities = 22/72 (30%), Positives = 45/72 (62%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M + VK L G+ +L+V +++ +K + + +P +QQ L+F G+ LED + LSDY
Sbjct: 1 MFLTVKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDYC 60
Query: 61 IQKESTLHLVLR 72
I ++++++++
Sbjct: 61 IGPNASINVIMQ 72
Score = 48.5 bits (114), Expect = 5e-06
Identities = 22/72 (30%), Positives = 45/72 (62%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
M + VK L G+ +L+V +++ +K + + +P +QQ L+F G+ LED + LSDY
Sbjct: 1 MFLTVKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDYC 60
Query: 137 IQKESTLHLVLR 148
I ++++++++
Sbjct: 61 IGPNASINVIMQ 72
Score = 48.5 bits (114), Expect = 5e-06
Identities = 22/72 (30%), Positives = 45/72 (62%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
M + VK L G+ +L+V +++ +K + + +P +QQ L+F G+ LED + LSDY
Sbjct: 1 MFLTVKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDYC 60
Query: 213 IQKESTLHLVLR 224
I ++++++++
Sbjct: 61 IGPNASINVIMQ 72
>gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Homo
sapiens]
Length = 728
Score = 48.1 bits (113), Expect = 6e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
L G+ + + +D + +K KI + G+P +Q+L + G ++D +L+ YN+ + +
Sbjct: 657 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 716
Query: 68 HLVLRLRGG 76
HL L+ RGG
Sbjct: 717 HLALKERGG 725
Score = 48.1 bits (113), Expect = 6e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 84 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 143
L G+ + + +D + +K KI + G+P +Q+L + G ++D +L+ YN+ + +
Sbjct: 657 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 716
Query: 144 HLVLRLRGG 152
HL L+ RGG
Sbjct: 717 HLALKERGG 725
Score = 48.1 bits (113), Expect = 6e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 160 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 219
L G+ + + +D + +K KI + G+P +Q+L + G ++D +L+ YN+ + +
Sbjct: 657 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 716
Query: 220 HLVLRLRGG 228
HL L+ RGG
Sbjct: 717 HLALKERGG 725
>gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo
sapiens]
Length = 793
Score = 48.1 bits (113), Expect = 6e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
L G+ + + +D + +K KI + G+P +Q+L + G ++D +L+ YN+ + +
Sbjct: 722 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 781
Query: 68 HLVLRLRGG 76
HL L+ RGG
Sbjct: 782 HLALKERGG 790
Score = 48.1 bits (113), Expect = 6e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 84 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 143
L G+ + + +D + +K KI + G+P +Q+L + G ++D +L+ YN+ + +
Sbjct: 722 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 781
Query: 144 HLVLRLRGG 152
HL L+ RGG
Sbjct: 782 HLALKERGG 790
Score = 48.1 bits (113), Expect = 6e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 160 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 219
L G+ + + +D + +K KI + G+P +Q+L + G ++D +L+ YN+ + +
Sbjct: 722 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 781
Query: 220 HLVLRLRGG 228
HL L+ RGG
Sbjct: 782 HLALKERGG 790
>gi|13376439 ubiquitin domain containing 1 [Homo sapiens]
Length = 227
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
Query: 65 STLHLVL 71
+ +++
Sbjct: 213 FVIQVII 219
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 140
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
Query: 141 STLHLVL 147
+ +++
Sbjct: 213 FVIQVII 219
Score = 48.1 bits (113), Expect = 6e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 157 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 216
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
Query: 217 STLHLVL 223
+ +++
Sbjct: 213 FVIQVII 219
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 61 IQKESTLHLVLR 72
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 137 IQKESTLHLVLR 148
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 213 IQKESTLHLVLR 224
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 61 IQKESTLHLVLR 72
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 137 IQKESTLHLVLR 148
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 213 IQKESTLHLVLR 224
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 61 IQKESTLHLVLR 72
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 137 IQKESTLHLVLR 148
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 213 IQKESTLHLVLR 224
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,152,754
Number of Sequences: 37866
Number of extensions: 335864
Number of successful extensions: 938
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 189
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.