Search of human proteins with 110238585

Search of human proteins with 110238585

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|110238585 hypothetical protein LOC84734 [Homo sapiens]
         (163 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|110238585 hypothetical protein LOC84734 [Homo sapiens]             326   5e-90
gi|170784820 hypothetical protein LOC83648 [Homo sapiens]             119   2e-27
gi|57528105 hypothetical protein LOC400831 [Homo sapiens]              40   9e-04
gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens]        39   0.003
gi|221139761 zinc finger protein 853 [Homo sapiens]                    38   0.004
gi|215820652 StAR-related lipid transfer (START) domain containi...    35   0.029
gi|215820650 StAR-related lipid transfer (START) domain containi...    35   0.029
gi|31543659 StAR-related lipid transfer (START) domain containin...    35   0.029
gi|194473673 hypothetical protein LOC100170765 [Homo sapiens]          33   0.084
gi|4557699 keratin 12 [Homo sapiens]                                   33   0.11 
gi|38158022 DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Homo sapi...    33   0.11 
gi|150378549 tangerin [Homo sapiens]                                   33   0.14 
gi|21264345 peripherin [Homo sapiens]                                  32   0.19 
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [...    32   0.19 
gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens]                 32   0.24 
gi|154813191 IQ motif containing E isoform 1 [Homo sapiens]            32   0.24 
gi|154813193 IQ motif containing E isoform 2 [Homo sapiens]            32   0.24 
gi|46409306 family with sequence similarity 43, member B [Homo s...    32   0.32 
gi|64085252 hypothetical protein LOC145508 [Homo sapiens]              32   0.32 
gi|30425510 zinc finger and BTB domain containing 8 opposite str...    32   0.32 
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap...    30   0.71 
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C...    30   0.71 
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo...    30   0.71 
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo...    30   0.71 
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi...    30   0.71 
gi|124244056 family with sequence similarity 123B [Homo sapiens]       30   0.92 
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi...    30   0.92 
gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]        30   0.92 
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]    30   0.92 
gi|47458820 signal transducer and activator of transcription 3 i...    29   1.6  

>gi|110238585 hypothetical protein LOC84734 [Homo sapiens]
          Length = 163

 Score =  326 bits (836), Expect = 5e-90
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MSLGLLKFQAVGEEDEEDEEGESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQA 60
           MSLGLLKFQAVGEEDEEDEEGESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQA
Sbjct: 1   MSLGLLKFQAVGEEDEEDEEGESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQA 60

Query: 61  KPGPGGPGDICGFDSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLH 120
           KPGPGGPGDICGFDSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLH
Sbjct: 61  KPGPGGPGDICGFDSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLH 120

Query: 121 QELLDEAELELELEPGAGLALAPLLRHLGLTRMNISARRFTLC 163
           QELLDEAELELELEPGAGLALAPLLRHLGLTRMNISARRFTLC
Sbjct: 121 QELLDEAELELELEPGAGLALAPLLRHLGLTRMNISARRFTLC 163


>gi|170784820 hypothetical protein LOC83648 [Homo sapiens]
          Length = 214

 Score =  119 bits (297), Expect = 2e-27
 Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 51/214 (23%)

Query: 1   MSLGLLKFQAVGEEDEEDEEG---ESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAW-- 55
           MS+  +  + VG E+         + L S+KALT KL+L+TRRPSYLEW A+++   W  
Sbjct: 1   MSVPQIHVEEVGAEEGAGAAAPPDDHLRSLKALTEKLRLETRRPSYLEWQARLEEHTWPF 60

Query: 56  -----------------------------------RRAQAKPGPGGPGDICGFDSMDSAL 80
                                              R A     P   G + GF S+D A+
Sbjct: 61  PRPAAEPQASLEEGERGGQEPLLPLREAGQHPPSARSASQGARPLSTGKLEGFQSIDEAI 120

Query: 81  EWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLHQELLDEAELELELEP----- 135
            WLR+EL EM+ QD+QLA QL+RLR  +++LK++  C LH+ +L++A  ELE        
Sbjct: 121 AWLRKELTEMRLQDQQLARQLMRLRGDINKLKIEHTCRLHRRMLNDATYELEERDELADL 180

Query: 136 ------GAGLALAPLLRHLGLTRMNISARRFTLC 163
                  +  +L+  L+ +G+T+MNI++RRF+LC
Sbjct: 181 FCDSPLASSFSLSTPLKLIGVTKMNINSRRFSLC 214


>gi|57528105 hypothetical protein LOC400831 [Homo sapiens]
          Length = 122

 Score = 40.0 bits (92), Expect = 9e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)

Query: 75  SMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQA 116
           S+   LEWLR+EL EMQ QD+ L   L  L + L  L+ D A
Sbjct: 33  SLGQTLEWLRKELSEMQIQDQSLLLTLRHLHSVLEELRADSA 74


>gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens]
          Length = 625

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 75  SMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACH------LHQELLDEAE 128
           SMD A  W  R L+E + ++ +L      +R QL + + ++ CH      L QE+ D  +
Sbjct: 464 SMDGAKGWFERRLKEAEGKEEELQD----VRDQLEQAQEERDCHLKTISSLKQEVKDTVD 519

Query: 129 LELELEPGAGLALAPLLRHLGLTR 152
            +  LE     AL  L R L L R
Sbjct: 520 GQRILEKKGSAALKDLKRQLHLER 543


>gi|221139761 zinc finger protein 853 [Homo sapiens]
          Length = 659

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 11/135 (8%)

Query: 9   QAVGEEDEEDEEGESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQAKPGPGGPG 68
           QA  ++   +++   L     L  + QLQ ++   L    Q Q +  ++ Q +P P  P 
Sbjct: 259 QAQLQQQLLEQQQAQLQQQLLLQQQEQLQQQQQQQL---LQQQQEQLQQQQLQPPPLEPE 315

Query: 69  D-------ICGFD-SMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLH 120
           +       +   D   +  LE  R+EL   Q  +RQ   + L+L+ Q    +++Q     
Sbjct: 316 EEEEVELELMPVDLGSEQELEQQRQELERQQELERQQEQRQLQLKLQEELQQLEQQLEQQ 375

Query: 121 QELLDEAELELELEP 135
           Q+ L++ E++LEL P
Sbjct: 376 QQQLEQQEVQLELTP 390


>gi|215820652 StAR-related lipid transfer (START) domain containing
           8 isoform b [Homo sapiens]
          Length = 1023

 Score = 35.0 bits (79), Expect = 0.029
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 11  VGEEDEEDEEGESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQAKPGPGGP 67
           +G  DEE+EE  S  SV+  T +++ Q    S +E  A  +S AW +A+ +P    P
Sbjct: 333 LGPGDEEEEEATS--SVEIATVEVKCQAEALSQMEVPAHGESPAWAQAEVQPAVLAP 387


>gi|215820650 StAR-related lipid transfer (START) domain containing
           8 isoform a [Homo sapiens]
          Length = 1103

 Score = 35.0 bits (79), Expect = 0.029
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 11  VGEEDEEDEEGESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQAKPGPGGP 67
           +G  DEE+EE  S  SV+  T +++ Q    S +E  A  +S AW +A+ +P    P
Sbjct: 413 LGPGDEEEEEATS--SVEIATVEVKCQAEALSQMEVPAHGESPAWAQAEVQPAVLAP 467


>gi|31543659 StAR-related lipid transfer (START) domain containing 8
           isoform b [Homo sapiens]
          Length = 1023

 Score = 35.0 bits (79), Expect = 0.029
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 11  VGEEDEEDEEGESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQAKPGPGGP 67
           +G  DEE+EE  S  SV+  T +++ Q    S +E  A  +S AW +A+ +P    P
Sbjct: 333 LGPGDEEEEEATS--SVEIATVEVKCQAEALSQMEVPAHGESPAWAQAEVQPAVLAP 387


>gi|194473673 hypothetical protein LOC100170765 [Homo sapiens]
          Length = 130

 Score = 33.5 bits (75), Expect = 0.084
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 53  QAWRRAQAKPGPGGPGDICGFDSMDS--ALEWLRRELREMQAQDRQLAGQLLRLRAQLHR 110
           QA R       PG      G D+  +  +L W+R EL  ++  D QL GQL  L  ++  
Sbjct: 22  QALREVSPVEIPGQTLRTAGADTGGACDSLLWIREELGNLRRVDVQLLGQLCSLGLEMGA 81

Query: 111 LKMDQACHLHQELLDEAELELELEP 135
           L+ +    L +E     E E + EP
Sbjct: 82  LREELVTILEEEEESSKEEEEDQEP 106


>gi|4557699 keratin 12 [Homo sapiens]
          Length = 494

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 32/142 (22%)

Query: 7   KFQAVGEEDEEDEE-------GESLDSVKALTAKLQ-----LQTRRPSYLEWTAQVQSQ- 53
           +++ + E++ +D E       GE    +   T +LQ     +   R ++     ++QSQ 
Sbjct: 304 QYETIAEQNRKDAEAWFIEKSGELRKEISTNTEQLQSSKSEVTDLRRAFQNLEIELQSQL 363

Query: 54  AWRRAQAKPGPGGPGDICGFDSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKM 113
           A +++         GD C              +L ++Q     L  QLL++RA   R  +
Sbjct: 364 AMKKSLEDSLAEAEGDYCA-------------QLSQVQQLISNLEAQLLQVRADAERQNV 410

Query: 114 DQACHLHQELLD-EAELELELE 134
           D     HQ LL+ +A LELE+E
Sbjct: 411 D-----HQRLLNVKARLELEIE 427


>gi|38158022 DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Homo sapiens]
          Length = 1143

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 82   WLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLHQELLDEAELELELEPGAGLAL 141
            WL  +L + ++  R LA  L RLRA+       Q  H  Q+ L+E E +  + P     L
Sbjct: 925  WLELQLADSESAIRLLAASL-RLRARWESALDRQLAHQAQQQLEEEEEDTPVSPKEVATL 983

Query: 142  APLLRHLGLTRMNISARRFT 161
            +  L     +++  S RR T
Sbjct: 984  SKELLQFTASKIPYSLRRLT 1003


>gi|150378549 tangerin [Homo sapiens]
          Length = 1523

 Score = 32.7 bits (73), Expect = 0.14
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 64   PGGPGDICGFDSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLHQEL 123
            P  PG+  G        +++  EL+ ++ + RQ+ G+   +  QL  L    A  L +E+
Sbjct: 1344 PPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEMQLRSLMESGANKLQEEV 1403

Query: 124  L 124
            L
Sbjct: 1404 L 1404


>gi|21264345 peripherin [Homo sapiens]
          Length = 470

 Score = 32.3 bits (72), Expect = 0.19
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 71  CGFDSMDSALEWLRRELREMQAQDRQLAG----QLLRLRAQLHRLKMDQACHL--HQELL 124
           C  D +    E L R+LRE++ Q    AG       RL  +L +LK + A HL  +QELL
Sbjct: 324 CEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELL 383

Query: 125 DEAELELELE 134
           +  ++ L++E
Sbjct: 384 N-VKMALDIE 392


>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
            sapiens]
          Length = 1937

 Score = 32.3 bits (72), Expect = 0.19
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 74   DSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKM------DQACHLHQELLDEA 127
            +S+D  LE LRRE + +Q +   L  Q+     Q+H L+        + C + Q  L+EA
Sbjct: 1493 ESLDQ-LETLRRENKNLQQEISDLTEQIAEGGKQIHELEKIKKQVEQEKCEI-QAALEEA 1550

Query: 128  ELELELEPG 136
            E  LE E G
Sbjct: 1551 EASLEHEEG 1559


>gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens]
          Length = 775

 Score = 32.0 bits (71), Expect = 0.24
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 63  GPGGPGDICGFDSMDSALEWLRRELREMQAQDRQLAG---QLLRLRAQLHRLKMDQACHL 119
           GPG P D    DS+  AL+              QLA    ++  LR Q HRL++ +   L
Sbjct: 626 GPGDPADTSSSDSLTQALQLAAANEPTFFLYAEQLARKEVEITSLRKQKHRLEV-EVHQL 684

Query: 120 HQELLDEAELELE 132
              LL+E E   E
Sbjct: 685 QDRLLEEGERHRE 697


>gi|154813191 IQ motif containing E isoform 1 [Homo sapiens]
          Length = 695

 Score = 32.0 bits (71), Expect = 0.24
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 12  GEEDEEDEEGESLDSVKALTAKLQ-LQTRRPSYLEWTAQVQSQAWRRAQAKPGPGGPGDI 70
           GEE+  + E    + ++ LT+KLQ LQ  +    E   +V      +AQ  P P      
Sbjct: 438 GEEERREREEVLREEIQTLTSKLQELQEMKKEEKEDCPEVP----HKAQELPAPTPSSRH 493

Query: 71  CGFD-SMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLHQELLDEAEL 129
           C  D   DS+ E L R         R  A ++L+ + ++++ K  +A      +LDEA +
Sbjct: 494 CEQDWPPDSSEEGLPRPRSPCSDGRRDAAARVLQAQWKVYKHKKKKA------VLDEAAV 547

Query: 130 ELE 132
            L+
Sbjct: 548 VLQ 550


>gi|154813193 IQ motif containing E isoform 2 [Homo sapiens]
          Length = 679

 Score = 32.0 bits (71), Expect = 0.24
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 12  GEEDEEDEEGESLDSVKALTAKLQ-LQTRRPSYLEWTAQVQSQAWRRAQAKPGPGGPGDI 70
           GEE+  + E    + ++ LT+KLQ LQ  +    E   +V      +AQ  P P      
Sbjct: 422 GEEERREREEVLREEIQTLTSKLQELQEMKKEEKEDCPEVP----HKAQELPAPTPSSRH 477

Query: 71  CGFD-SMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLHQELLDEAEL 129
           C  D   DS+ E L R         R  A ++L+ + ++++ K  +A      +LDEA +
Sbjct: 478 CEQDWPPDSSEEGLPRPRSPCSDGRRDAAARVLQAQWKVYKHKKKKA------VLDEAAV 531

Query: 130 ELE 132
            L+
Sbjct: 532 VLQ 534


>gi|46409306 family with sequence similarity 43, member B [Homo
           sapiens]
          Length = 329

 Score = 31.6 bits (70), Expect = 0.32
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 2   SLGLLKFQAVGEEDEEDEEGESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQAK 61
           S G  +  ++ EEDEE+EE ++ +    +      Q  RP  L    ++++ + R A A 
Sbjct: 254 SRGAPRLSSIQEEDEEEEEDDAEEQEGGVP-----QRERPEVLSLARELRTCSLRGAPAP 308

Query: 62  PGPGGP 67
           P P  P
Sbjct: 309 PPPAQP 314


>gi|64085252 hypothetical protein LOC145508 [Homo sapiens]
          Length = 1094

 Score = 31.6 bits (70), Expect = 0.32
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 9/60 (15%)

Query: 80  LEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHL---------HQELLDEAELE 130
           L+WL  EL+E + +++ L  QL+  R QL  L  ++   L          ++LLDE   E
Sbjct: 874 LQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLLDEIHRE 933


>gi|30425510 zinc finger and BTB domain containing 8 opposite
          strand [Homo sapiens]
          Length = 179

 Score = 31.6 bits (70), Expect = 0.32
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 10 AVGEEDEEDEEGESL-DSVKALTAKLQLQTRRPSYLEWTAQVQSQAW 55
          AV  ++EED    +L +  KA+ AK     R+  YL+ TA VQ  AW
Sbjct: 11 AVMAQEEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAW 57


>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
           sapiens]
          Length = 693

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 14  EDEEDEEGESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQAKPGPGGPGDICGF 73
           E  +DE       V+ L  KLQ Q      L   ++ Q Q  +  +          +   
Sbjct: 298 EQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQ 357

Query: 74  DSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLHQE--LLDEAE 128
           + +    E LR + + +Q Q  +L  Q  RLR Q  RL+ ++     QE  L D+ E
Sbjct: 358 ERLCEQNERLREQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQEE 414


>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
           isoform 1 [Homo sapiens]
          Length = 693

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 14  EDEEDEEGESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQAKPGPGGPGDICGF 73
           E  +DE       V+ L  KLQ Q      L   ++ Q Q  +  +          +   
Sbjct: 298 EQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQ 357

Query: 74  DSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLHQE--LLDEAE 128
           + +    E LR + + +Q Q  +L  Q  RLR Q  RL+ ++     QE  L D+ E
Sbjct: 358 ERLCEQNERLREQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQEE 414


>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
            sapiens]
          Length = 1941

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 74   DSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKM------DQACHLHQELLDEA 127
            +S+D  LE L+RE + +Q +   L  Q+     ++H L+        + C L Q  L+EA
Sbjct: 1496 ESLDQ-LETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQVEQEKCEL-QAALEEA 1553

Query: 128  ELELELEPG 136
            E  LE E G
Sbjct: 1554 EASLEHEEG 1562


>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
            sapiens]
          Length = 1941

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 74   DSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKM------DQACHLHQELLDEA 127
            +S+D  LE L+RE + +Q +   L  Q+     ++H L+        + C L Q  L+EA
Sbjct: 1496 ESLDQ-LETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQVEQEKCEL-QAALEEA 1553

Query: 128  ELELELEPG 136
            E  LE E G
Sbjct: 1554 EASLEHEEG 1562


>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
           sapiens]
          Length = 693

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 14  EDEEDEEGESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQAKPGPGGPGDICGF 73
           E  +DE       V+ L  KLQ Q      L   ++ Q Q  +  +          +   
Sbjct: 298 EQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQ 357

Query: 74  DSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLHQE--LLDEAE 128
           + +    E LR + + +Q Q  +L  Q  RLR Q  RL+ ++     QE  L D+ E
Sbjct: 358 ERLCEQNERLREQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQEE 414


>gi|124244056 family with sequence similarity 123B [Homo sapiens]
          Length = 1135

 Score = 30.0 bits (66), Expect = 0.92
 Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 13/54 (24%)

Query: 13  EEDEEDEEGE-SLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQAKPGPG 65
           EEDEE+EEGE S DS       L L T  P   +W       AW       GPG
Sbjct: 930 EEDEEEEEGEWSRDS------PLSLYTEPPGAYDW------PAWAPCPLPVGPG 971


>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
           sapiens]
          Length = 693

 Score = 30.0 bits (66), Expect = 0.92
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 14  EDEEDEEGESLDSVKALTAKLQLQTRRPSYLEWTAQVQSQAWRRAQAKPGPGGPGDICGF 73
           E  +DE       V+ L  KLQ Q      L   ++ Q Q  +  +          +   
Sbjct: 298 EQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEVQRVREQ 357

Query: 74  DSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMDQACHLHQE--LLDEAE 128
           + +    E LR + + +Q Q  +L  Q  RLR Q  RL+ ++     QE  L D+ E
Sbjct: 358 ERLCEQNERLREQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQEE 414


>gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]
          Length = 841

 Score = 30.0 bits (66), Expect = 0.92
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 28/106 (26%)

Query: 75  SMDSALEWLRRELRE------MQAQDRQLA----------------GQLLRLRAQLHRLK 112
           SMD A  W  R L+E       Q Q+++ A                 +L  +R QL + +
Sbjct: 517 SMDGAKGWFERRLKEAEESLQQQQQEQEEALKQCREQHAAELKGKEEELQDVRDQLEQAQ 576

Query: 113 MDQACH------LHQELLDEAELELELEPGAGLALAPLLRHLGLTR 152
            ++ CH      L QE+ D  + +  LE     AL  L R L L R
Sbjct: 577 EERDCHLKTISSLKQEVKDTVDGQRILEKKGSAALKDLKRQLHLER 622


>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
          Length = 1498

 Score = 30.0 bits (66), Expect = 0.92
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 76  MDSALEWLRRELREMQAQDRQLAGQLLRLR---AQLHRLKMDQACHLHQELLDEAELELE 132
           +DS L+ LR+EL ++  + R    +L RL    AQ+ +   D   HL     +  E+E  
Sbjct: 876 LDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETH 935

Query: 133 LE 134
           L+
Sbjct: 936 LQ 937


>gi|47458820 signal transducer and activator of transcription 3
           isoform 3 [Homo sapiens]
          Length = 722

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 55  WRRAQAKPGPGGPGDICGFDSMDSALEWLRRELREMQAQDRQLAGQLLRLRAQLHRLKMD 114
           W+R Q     GGP +IC    +D    W+   L E Q Q RQ   +L  L+ ++   K D
Sbjct: 243 WKRRQQIACIGGPPNIC----LDRLENWI-TSLAESQLQTRQQIKKLEELQQKV-SYKGD 296

Query: 115 QACHLHQELLDEAELEL 131
                H+ +L+E  +EL
Sbjct: 297 PIVQ-HRPMLEERIVEL 312


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,790,828
Number of Sequences: 37866
Number of extensions: 299008
Number of successful extensions: 2473
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 2391
Number of HSP's gapped (non-prelim): 155
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.