Guide to the Human Genome
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Name: CARHSP1 Sequence: fasta or formatted (147aa) NCBI GI: 109715854
Description:

calcium-regulated heat-stable protein 1

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt mRNA [147aa] calcium-regulated heat-stable protein 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          6           1
 C cysteine            2.7          4           1
 D aspartate           3.4          5           1
 E glutamate           6.1          9           1
 F phenylalanine       2.7          4           1
 G glycine             8.2         12           2
 H histidine           4.1          6           1
 I isoleucine          4.1          6           1
 K lysine              4.8          7           1
 L leucine             4.8          7           2
 M methionine          1.4          2           1
 N asparagine          1.4          2           1
 P proline            13.6         20           5
 Q glutamine           2.7          4           1
 R arginine            6.1          9           2
 S serine             10.2         15           2
 T threonine           7.5         11           1
 V valine              9.5         14           2
 W tryptophan          0.7          1           1
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium-regulated heat-stable protein 1 
CARHSP1               1.000   calcium-regulated heat-stable protein 1 
CSDC2                 0.584   RNA-binding protein pippin 
ZFHX2                 0.035   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.035   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.035   PREDICTED: zinc finger homeobox 2 
TOMM40                0.031   translocase of outer mitochondrial membrane 40 [Hom...
TOMM40                0.031   translocase of outer mitochondrial membrane 40 [Hom...
TOMM40                0.031   translocase of outer mitochondrial membrane 40 
CSDE1                 0.031   upstream of NRAS isoform 3 
CSDE1                 0.031   upstream of NRAS isoform 1 
CSDE1                 0.031   upstream of NRAS isoform 2 
ZNF318                0.031   zinc finger protein 318 
HRASLS5               0.028   HRAS-like suppressor family, member 5 isoform 3 [Ho...
HRASLS5               0.028   HRAS-like suppressor family, member 5 isoform 1 [Hom...
ZNF827                0.024   zinc finger protein 827 
INF2                  0.024   inverted formin 2 isoform 2 
INF2                  0.024   inverted formin 2 isoform 1 
LOC100130506          0.024   PREDICTED: hypothetical protein 
LOC100288911          0.024   PREDICTED: hypothetical protein XP_002342241 
ARHGAP17              0.024   nadrin isoform 1 
ARHGAP17              0.024   nadrin isoform 2 
SYNPO                 0.021   synaptopodin isoform A 
CCDC6                 0.021   coiled-coil domain containing 6 
HCN2                  0.021   hyperpolarization activated cyclic nucleotide-gated...
TTN                   0.021   titin isoform novex-3 
TTN                   0.021   titin isoform N2-A 
TTN                   0.021   titin isoform novex-2 
TTN                   0.021   titin isoform novex-1 
TTN                   0.021   titin isoform N2-B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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