Guide to the Human Genome
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Name: CSDE1 Sequence: fasta or formatted (798aa) NCBI GI: 56117852
Description:

upstream of NRAS isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {813aa} upstream of NRAS isoform 3
alt prot {767aa} upstream of NRAS isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         43           2
 C cysteine            1.9         15           1
 D aspartate           6.6         53           2
 E glutamate           7.8         62           2
 F phenylalanine       5.5         44           2
 G glycine             8.1         65           1
 H histidine           2.3         18           1
 I isoleucine          5.6         45           2
 K lysine              7.5         60           3
 L leucine             6.5         52           2
 M methionine          1.9         15           1
 N asparagine          5.3         42           2
 P proline             4.3         34           1
 Q glutamine           4.1         33           2
 R arginine            5.3         42           2
 S serine              5.8         46           2
 T threonine           5.3         42           2
 V valine              8.8         70           2
 W tryptophan          0.1          1           1
 Y tyrosine            2.0         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   upstream of NRAS isoform 1 
CSDE1                 0.948   upstream of NRAS isoform 3 
CSDE1                 0.948   upstream of NRAS isoform 2 
CARHSP1               0.006   calcium-regulated heat-stable protein 1 
CARHSP1               0.006   calcium-regulated heat-stable protein 1 
ERBB3                 0.005   erbB-3 isoform 1 precursor 
ZFP64                 0.004   zinc finger protein 64 isoform d 
ZFP64                 0.004   zinc finger protein 64 isoform c 
ZFP64                 0.004   zinc finger protein 64 isoform a 
YBX2                  0.004   Y box binding protein 2 
LRRIQ1                0.004   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.004   leucine-rich repeats and IQ motif containing 1 isof...
TTN                   0.003   titin isoform novex-3 
YBX1                  0.003   nuclease sensitive element binding protein 1 
CSDA                  0.003   cold shock domain protein A isoform b 
CSDA                  0.003   cold shock domain protein A isoform a 
NASP                  0.003   nuclear autoantigenic sperm protein isoform 2 
NASP                  0.003   nuclear autoantigenic sperm protein isoform 1 
FAT3                  0.003   FAT tumor suppressor homolog 3 
KIAA0430              0.003   limkain b1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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