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Search of human proteins with 149944551
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|149944551 defensin, beta 131 [Homo sapiens]
(70 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149944551 defensin, beta 131 [Homo sapiens] 154 2e-38
gi|169173154 PREDICTED: hypothetical protein [Homo sapiens] 150 2e-37
gi|169172390 PREDICTED: similar to defensin, beta 131 [Homo sapi... 150 2e-37
gi|169172906 PREDICTED: similar to defensin, beta 131 [Homo sapi... 146 3e-36
gi|169202989 PREDICTED: similar to defensin, beta 131 [Homo sapi... 146 4e-36
gi|169203494 PREDICTED: similar to defensin, beta 131 [Homo sapi... 146 4e-36
gi|169202282 PREDICTED: similar to defensin, beta 131 [Homo sapi... 146 4e-36
gi|239743495 PREDICTED: hypothetical protein XP_002342880 [Homo ... 145 5e-36
gi|82734219 beta-defensin 114 [Homo sapiens] 38 0.002
gi|18250304 beta defensin 129 precursor [Homo sapiens] 34 0.028
gi|22748611 defensin, beta 106A precursor [Homo sapiens] 33 0.037
gi|103485143 defensin, beta 106B precursor [Homo sapiens] 33 0.037
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 33 0.063
gi|103485139 defensin, beta 104A precursor [Homo sapiens] 30 0.31
gi|103485137 defensin, beta 104B precursor [Homo sapiens] 30 0.31
gi|16905373 beta-defensin 118 [Homo sapiens] 29 0.70
gi|116517226 beta-defensin 135 [Homo sapiens] 28 1.2
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] 28 2.0
gi|21040279 defensin, beta 127 preproprotein [Homo sapiens] 27 4.5
gi|82734223 beta-defensin 124 [Homo sapiens] 26 7.7
gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens] 26 7.7
>gi|149944551 defensin, beta 131 [Homo sapiens]
Length = 70
Score = 154 bits (388), Expect = 2e-38
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70
>gi|169173154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 150 bits (380), Expect = 2e-37
Identities = 69/70 (98%), Positives = 69/70 (98%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLM TVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70
>gi|169172390 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 150 bits (380), Expect = 2e-37
Identities = 69/70 (98%), Positives = 69/70 (98%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLM TVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70
>gi|169172906 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 146 bits (369), Expect = 3e-36
Identities = 67/70 (95%), Positives = 67/70 (95%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLM TVPP RSFISNDECPSEYYHCRLKCNADEHAI YCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPRRSFISNDECPSEYYHCRLKCNADEHAITYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70
>gi|169202989 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 146 bits (368), Expect = 4e-36
Identities = 66/70 (94%), Positives = 67/70 (95%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLM TVPP RSF SNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
II+IDGQKKW
Sbjct: 61 IIQIDGQKKW 70
>gi|169203494 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 146 bits (368), Expect = 4e-36
Identities = 66/70 (94%), Positives = 67/70 (95%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLM TVPP RSF SNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
II+IDGQKKW
Sbjct: 61 IIQIDGQKKW 70
>gi|169202282 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 146 bits (368), Expect = 4e-36
Identities = 66/70 (94%), Positives = 67/70 (95%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLM TVPP RSF SNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
Query: 61 IIEIDGQKKW 70
II+IDGQKKW
Sbjct: 61 IIQIDGQKKW 70
>gi|239743495 PREDICTED: hypothetical protein XP_002342880 [Homo
sapiens]
Length = 70
Score = 145 bits (367), Expect = 5e-36
Identities = 67/70 (95%), Positives = 67/70 (95%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
MRVLFFVFGVLSLM TVPPARSFISNDECPSEYYHCRLKCNADEH IRYCA FSICCKLK
Sbjct: 1 MRVLFFVFGVLSLMSTVPPARSFISNDECPSEYYHCRLKCNADEHVIRYCAYFSICCKLK 60
Query: 61 IIEIDGQKKW 70
IIEIDGQKKW
Sbjct: 61 IIEIDGQKKW 70
>gi|82734219 beta-defensin 114 [Homo sapiens]
Length = 69
Score = 38.1 bits (87), Expect = 0.002
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCA-DFSICCKL 59
MR+ +++ + + F +P + ++ D C Y C+ C E I C+ ICC
Sbjct: 1 MRIFYYLHFLCYVTFILPATCTLVNADRCTKRYGRCKRDCLESEKQIDICSLPRKICCTE 60
Query: 60 KIIEID 65
K+ E D
Sbjct: 61 KLYEED 66
>gi|18250304 beta defensin 129 precursor [Homo sapiens]
Length = 183
Score = 33.9 bits (76), Expect = 0.028
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
M++LF +F L L + V FI C CR CN DE I+ C C K
Sbjct: 1 MKLLFPIFASLMLQYQVNT--EFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMKKCCVGPK 58
Query: 61 IIEI 64
++++
Sbjct: 59 VVKL 62
>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
Length = 65
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCK 58
MR F+F VL F + PA++ +++C C+ C +E I C CC+
Sbjct: 1 MRTFLFLFAVL---FFLTPAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCCR 55
>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
Length = 65
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCK 58
MR F+F VL F + PA++ +++C C+ C +E I C CC+
Sbjct: 1 MRTFLFLFAVL---FFLTPAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCCR 55
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 32.7 bits (73), Expect = 0.063
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICC 57
M++L VL L+ + P C + Y CR +C+ E YC + +CC
Sbjct: 1 MKLLLLTLTVLLLLSQLTPG----GTQRCWNLYGKCRYRCSKKERVYVYCINNKMCC 53
>gi|103485139 defensin, beta 104A precursor [Homo sapiens]
Length = 72
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDE-CPSEYYHCRLKCNADEHAIRYCADFSICCKL 59
M+ L + + L++ P RS D C CR KC + E+ I C + CC
Sbjct: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
Query: 60 K 60
K
Sbjct: 61 K 61
>gi|103485137 defensin, beta 104B precursor [Homo sapiens]
Length = 72
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDE-CPSEYYHCRLKCNADEHAIRYCADFSICCKL 59
M+ L + + L++ P RS D C CR KC + E+ I C + CC
Sbjct: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
Query: 60 K 60
K
Sbjct: 61 K 61
>gi|16905373 beta-defensin 118 [Homo sapiens]
Length = 123
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICC 57
M++L +L L+ V PA S +C + HCR +C E C + CC
Sbjct: 1 MKLLLLALPMLVLLPQVIPAYS--GEKKCWNRSGHCRKQCKDGEAVKDTCKNLRACC 55
>gi|116517226 beta-defensin 135 [Homo sapiens]
Length = 77
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 2 RVLFFVFGVLSLMFTVPPARS----FISN--DECPSEYYHCRLKCNADEHAIRYCADFSI 55
R + VL+L+F VPP RS +I C CR KC +E C +
Sbjct: 4 RSVLLALVVLNLLFYVPPGRSGPNVYIQKIFASCWRLQGTCRPKCLKNEQYRILCDTIHL 63
Query: 56 CC 57
CC
Sbjct: 64 CC 65
>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
Length = 1541
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 10/35 (28%)
Query: 27 DECPSEYY--HCRLKCNADEHAIRYCADFSICCKL 59
D CP YY HCR KCN CA+ C +L
Sbjct: 596 DGCPKGYYGKHCRKKCN--------CANRGRCHRL 622
>gi|21040279 defensin, beta 127 preproprotein [Homo sapiens]
Length = 99
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 4 LFFVFGVLSLMFTVPPARSFISNDECPSEYY--HCRLKCNADEHAIRYCADFSICCKLKI 61
LF + +L +F P + +C + Y HCR C +E C + CC L I
Sbjct: 3 LFMIIAIL--LFQKPTVTEQLK--KCWNNYVQGHCRKICRVNEVPEALCENGRYCC-LNI 57
Query: 62 IEIDGQKK 69
E++ KK
Sbjct: 58 KELEACKK 65
>gi|82734223 beta-defensin 124 [Homo sapiens]
Length = 71
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 2 RVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICC 57
++L F+ +L L VP RS C C+ C E + C D S+CC
Sbjct: 3 QLLLFLVALLVLGH-VPSGRSEFKR--CWKGQGACQTYCTRQETYMHLCPDASLCC 55
>gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]
Length = 88
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 35 HCRLKCNADEHAIRYCADFSICC 57
HCRL C E +I C + CC
Sbjct: 28 HCRLLCKDGEDSIIRCRNRKRCC 50
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.332 0.144 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,785,659
Number of Sequences: 37866
Number of extensions: 97364
Number of successful extensions: 249
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 21
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.