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Search of human proteins with 149363676
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|149363676 hypothetical protein LOC404770 [Homo sapiens]
(182 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149363676 hypothetical protein LOC404770 [Homo sapiens] 384 e-107
gi|223468617 family with sequence similarity 75, member C1 [Homo... 233 5e-62
gi|223633941 hypothetical protein LOC389730 [Homo sapiens] 219 1e-57
gi|153791826 hypothetical protein LOC26165 [Homo sapiens] 219 1e-57
gi|133892686 hypothetical protein LOC727830 [Homo sapiens] 218 2e-57
gi|146231958 hypothetical protein LOC647060 [Homo sapiens] 218 3e-57
gi|169174618 PREDICTED: family with sequence similarity 75, memb... 215 1e-56
gi|239743732 PREDICTED: family with sequence similarity 75, memb... 215 1e-56
gi|165377334 hypothetical protein LOC727905 [Homo sapiens] 215 1e-56
gi|91206406 hypothetical protein LOC642265 [Homo sapiens] 214 3e-56
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens] 69 3e-12
gi|48717285 hypothetical protein LOC389763 [Homo sapiens] 49 3e-06
gi|223633944 hypothetical protein LOC389762 [Homo sapiens] 46 2e-05
gi|223671858 hypothetical protein LOC389761 [Homo sapiens] 46 2e-05
gi|169168458 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 41 6e-04
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 39 0.002
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 39 0.002
gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens] 39 0.003
gi|239742749 PREDICTED: hypothetical protein XP_002342626 [Homo ... 38 0.004
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 37 0.009
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 37 0.009
gi|109240536 DC-STAMP domain containing 2 [Homo sapiens] 37 0.012
gi|214831495 hypothetical protein LOC285679 [Homo sapiens] 37 0.012
gi|7669528 neuregulin 2 isoform 2 [Homo sapiens] 36 0.021
gi|7669532 neuregulin 2 isoform 4 [Homo sapiens] 36 0.021
gi|7669530 neuregulin 2 isoform 3 [Homo sapiens] 36 0.021
gi|4758832 neuregulin 2 isoform 1 [Homo sapiens] 36 0.021
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens] 36 0.021
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.027
>gi|149363676 hypothetical protein LOC404770 [Homo sapiens]
Length = 182
Score = 384 bits (987), Expect = e-107
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MKPWWARDWALPSRGQCVCPGETNACLDAERACRECPRGLEETWDLLSQLQSLLGTHLDK 60
MKPWWARDWALPSRGQCVCPGETNACLDAERACRECPRGLEETWDLLSQLQSLLGTHLDK
Sbjct: 1 MKPWWARDWALPSRGQCVCPGETNACLDAERACRECPRGLEETWDLLSQLQSLLGTHLDK 60
Query: 61 GDFGQLSGPEPPGEVGKRAPDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSP 120
GDFGQLSGPEPPGEVGKRAPDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSP
Sbjct: 61 GDFGQLSGPEPPGEVGKRAPDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSP 120
Query: 121 GPMTTSVSSLSASQPPEPSLLLERPSPKPPALFLTHHTPLILWPALLLLQKTSLLLPCGT 180
GPMTTSVSSLSASQPPEPSLLLERPSPKPPALFLTHHTPLILWPALLLLQKTSLLLPCGT
Sbjct: 121 GPMTTSVSSLSASQPPEPSLLLERPSPKPPALFLTHHTPLILWPALLLLQKTSLLLPCGT 180
Query: 181 PL 182
PL
Sbjct: 181 PL 182
>gi|223468617 family with sequence similarity 75, member C1 [Homo
sapiens]
Length = 1188
Score = 233 bits (595), Expect = 5e-62
Identities = 115/130 (88%), Positives = 119/130 (91%), Gaps = 1/130 (0%)
Query: 31 RACRECPRGLEETWDLLSQLQSLLGTHLDKGDFGQLSGPEPPGEVGKRAPDGASRSSLEP 90
RACRECPRGLEETWDLLSQLQSLLG HL+KGDFGQLSGP+PPGEVGKR PDGASRSS EP
Sbjct: 94 RACRECPRGLEETWDLLSQLQSLLGPHLEKGDFGQLSGPDPPGEVGKRTPDGASRSSHEP 153
Query: 91 MEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPP 150
MEDAAPI+ LASPDPR KHPQDLASTP PGPMTTSVSSLSASQPPEPSLLLERPSP+PP
Sbjct: 154 MEDAAPIVSPLASPDPRTKHPQDLASTPPPGPMTTSVSSLSASQPPEPSLLLERPSPEPP 213
Query: 151 ALF-LTHHTP 159
ALF HTP
Sbjct: 214 ALFPHPPHTP 223
>gi|223633941 hypothetical protein LOC389730 [Homo sapiens]
Length = 1343
Score = 219 bits (557), Expect = 1e-57
Identities = 111/130 (85%), Positives = 117/130 (90%), Gaps = 1/130 (0%)
Query: 31 RACRECPRGLEETWDLLSQLQSLLGTHLDKGDFGQLSGPEPPGEVGKRAPDGASRSSLEP 90
RA RECPRGLEET DLLSQLQSLLG HLDKGDFGQLSGP+PPGEVG+RAPDGAS+SS EP
Sbjct: 82 RAGRECPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEP 141
Query: 91 MEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPP 150
MEDAAPI+ LASPDP+ KHPQDLASTPSPGPMTTSVSSLSASQPPEPSL LE PSP+PP
Sbjct: 142 MEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPP 201
Query: 151 ALF-LTHHTP 159
ALF HTP
Sbjct: 202 ALFPHPPHTP 211
>gi|153791826 hypothetical protein LOC26165 [Homo sapiens]
Length = 1347
Score = 219 bits (557), Expect = 1e-57
Identities = 111/130 (85%), Positives = 117/130 (90%), Gaps = 1/130 (0%)
Query: 31 RACRECPRGLEETWDLLSQLQSLLGTHLDKGDFGQLSGPEPPGEVGKRAPDGASRSSLEP 90
RA RECPRGLEET DLLSQLQSLLG HLDKGDFGQLSGP+PPGEVG+RAPDGAS+SS EP
Sbjct: 82 RAGRECPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEP 141
Query: 91 MEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPP 150
MEDAAPI+ LASPDP+ KHPQDLASTPSPGPMTTSVSSLSASQPPEPSL LE PSP+PP
Sbjct: 142 MEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPP 201
Query: 151 ALF-LTHHTP 159
ALF HTP
Sbjct: 202 ALFPHPPHTP 211
>gi|133892686 hypothetical protein LOC727830 [Homo sapiens]
Length = 1347
Score = 218 bits (555), Expect = 2e-57
Identities = 111/130 (85%), Positives = 117/130 (90%), Gaps = 1/130 (0%)
Query: 31 RACRECPRGLEETWDLLSQLQSLLGTHLDKGDFGQLSGPEPPGEVGKRAPDGASRSSLEP 90
RA REC RGLEET DLLSQLQSLLG HLDKGDFGQLSGP+PPGEVG+RAPDGAS+SS EP
Sbjct: 82 RAGRECRRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEP 141
Query: 91 MEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPP 150
MEDAAPI+ LLASPDP+ KHPQDLASTPSPGPMTTSVSSLSASQPPEPSL LE PSP+PP
Sbjct: 142 MEDAAPILSLLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPP 201
Query: 151 ALF-LTHHTP 159
ALF HTP
Sbjct: 202 ALFPHPPHTP 211
>gi|146231958 hypothetical protein LOC647060 [Homo sapiens]
Length = 1347
Score = 218 bits (554), Expect = 3e-57
Identities = 110/130 (84%), Positives = 117/130 (90%), Gaps = 1/130 (0%)
Query: 31 RACRECPRGLEETWDLLSQLQSLLGTHLDKGDFGQLSGPEPPGEVGKRAPDGASRSSLEP 90
RA RECPRGL+ET DLLSQLQSLLG HLDKGDFGQLSGP+PPGEVG+RAPDGAS+SS EP
Sbjct: 82 RAGRECPRGLQETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEP 141
Query: 91 MEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPP 150
MEDAAPI+ LASPDP+ KHPQDLASTPSPGPMTTSVSSLSASQPPEPSL LE PSP+PP
Sbjct: 142 MEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPP 201
Query: 151 ALF-LTHHTP 159
ALF HTP
Sbjct: 202 ALFPHPPHTP 211
>gi|169174618 PREDICTED: family with sequence similarity 75, member
A4 isoform 2 [Homo sapiens]
Length = 1272
Score = 215 bits (548), Expect = 1e-56
Identities = 110/130 (84%), Positives = 116/130 (89%), Gaps = 1/130 (0%)
Query: 31 RACRECPRGLEETWDLLSQLQSLLGTHLDKGDFGQLSGPEPPGEVGKRAPDGASRSSLEP 90
RA REC RGLEET DLLSQLQSLLG HLDKGDFGQLSGP+PPGEVG+RAPDGAS+SS EP
Sbjct: 7 RAGRECRRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEP 66
Query: 91 MEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPP 150
MEDAAPI+ LASPDP+ KHPQDLASTPSPGPMTTSVSSLSASQPPEPSL LE PSP+PP
Sbjct: 67 MEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPP 126
Query: 151 ALF-LTHHTP 159
ALF HTP
Sbjct: 127 ALFPHPPHTP 136
>gi|239743732 PREDICTED: family with sequence similarity 75, member
A4 isoform 1 [Homo sapiens]
Length = 1361
Score = 215 bits (548), Expect = 1e-56
Identities = 110/130 (84%), Positives = 116/130 (89%), Gaps = 1/130 (0%)
Query: 31 RACRECPRGLEETWDLLSQLQSLLGTHLDKGDFGQLSGPEPPGEVGKRAPDGASRSSLEP 90
RA REC RGLEET DLLSQLQSLLG HLDKGDFGQLSGP+PPGEVG+RAPDGAS+SS EP
Sbjct: 96 RAGRECRRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEP 155
Query: 91 MEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPP 150
MEDAAPI+ LASPDP+ KHPQDLASTPSPGPMTTSVSSLSASQPPEPSL LE PSP+PP
Sbjct: 156 MEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPP 215
Query: 151 ALF-LTHHTP 159
ALF HTP
Sbjct: 216 ALFPHPPHTP 225
>gi|165377334 hypothetical protein LOC727905 [Homo sapiens]
Length = 1347
Score = 215 bits (548), Expect = 1e-56
Identities = 110/130 (84%), Positives = 116/130 (89%), Gaps = 1/130 (0%)
Query: 31 RACRECPRGLEETWDLLSQLQSLLGTHLDKGDFGQLSGPEPPGEVGKRAPDGASRSSLEP 90
RA REC RGLEET DLLSQLQSLLG HLDKGDFGQLSGP+PPGEVG+RAPDGAS+SS EP
Sbjct: 82 RAGRECRRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEP 141
Query: 91 MEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPP 150
MEDAAPI+ LASPDP+ KHPQDLASTPSPGPMTTSVSSLSASQPPEPSL LE PSP+PP
Sbjct: 142 MEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPP 201
Query: 151 ALF-LTHHTP 159
ALF HTP
Sbjct: 202 ALFPHPPHTP 211
>gi|91206406 hypothetical protein LOC642265 [Homo sapiens]
Length = 1347
Score = 214 bits (545), Expect = 3e-56
Identities = 109/130 (83%), Positives = 116/130 (89%), Gaps = 1/130 (0%)
Query: 31 RACRECPRGLEETWDLLSQLQSLLGTHLDKGDFGQLSGPEPPGEVGKRAPDGASRSSLEP 90
RA REC RGL+ET DLLSQLQSLLG HLDKGDFGQLSGP+PPGEVG+RAPDGAS+SS EP
Sbjct: 82 RAGRECRRGLQETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEP 141
Query: 91 MEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPP 150
MEDAAPI+ LASPDP+ KHPQDLASTPSPGPMTTSVSSLSASQPPEPSL LE PSP+PP
Sbjct: 142 MEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPP 201
Query: 151 ALF-LTHHTP 159
ALF HTP
Sbjct: 202 ALFPHPPHTP 211
>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
Length = 1445
Score = 68.6 bits (166), Expect = 3e-12
Identities = 54/132 (40%), Positives = 70/132 (53%), Gaps = 11/132 (8%)
Query: 27 LDAERACRECPRGLEETWDLLSQLQSLLGTHLDKGDFGQLSGPEPPGEVGKRAPDGASRS 86
+ A +ACR R LEET DL L+S L +G G +P G+V K P A +
Sbjct: 117 ISALKACRILLRELEETRDLNYLLESHLRKLAGEGSSHLPLGGDPLGDVCKPVPAKAHQP 176
Query: 87 SLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSV-----SSLSASQPPEPSLL 141
+ M+D +P L+ P P P LAST SPGPMT S S+LSAS PPEP L
Sbjct: 177 HGKCMQDPSPA--SLSPPAP----PAPLASTLSPGPMTFSEPFGPHSTLSASGPPEPLLP 230
Query: 142 LERPSPKPPALF 153
L+ P+ +P +F
Sbjct: 231 LKCPATQPHVVF 242
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 92 EDAAPIIYLLASPDPRIKH--PQDLASTPSPGPMTTSVSSLSASQPPEPSLLLER----- 144
E A +++ +P + H P D AST PG SS + PP+P + +
Sbjct: 449 ESLATTVWVSRNPSSQNAHSVPLDKASTSLPGEPEVEASSQLSQAPPQPHHMAQPQHFTP 508
Query: 145 --PSPKPPAL 152
P +PP L
Sbjct: 509 AWPQSQPPPL 518
>gi|48717285 hypothetical protein LOC389763 [Homo sapiens]
Length = 1576
Score = 48.5 bits (114), Expect = 3e-06
Identities = 48/136 (35%), Positives = 58/136 (42%), Gaps = 29/136 (21%)
Query: 41 EETWDLLSQLQSL--------LGTHLDKGDFGQLSGPEPPGEVGKRAP-DGASRSSLEPM 91
EE LLS L+S G H D F +L P+P V KRA D S E +
Sbjct: 90 EEERKLLSLLKSFGPPVSCSPRGQHHDTNHFRRLLCPDPVCRVCKRATADIQQLLSWESL 149
Query: 92 EDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPPA 151
+DAAP + LAS + LASTPS + PPE +L RP PP
Sbjct: 150 KDAAPSVSPLASSASATESSFTLASTPS-------------ATPPEDLILSPRPKASPP- 195
Query: 152 LFLTHHTPLILWPALL 167
PLIL P L+
Sbjct: 196 ------PPLILSPDLI 205
>gi|223633944 hypothetical protein LOC389762 [Homo sapiens]
Length = 917
Score = 46.2 bits (108), Expect = 2e-05
Identities = 42/117 (35%), Positives = 51/117 (43%), Gaps = 21/117 (17%)
Query: 52 SLLGTHLDKGDFGQLSGPEPPGEVGKRAPDGASRS-SLEPMEDAAPIIYLLASPDPRIKH 110
S LG H D F +L P+P V RA R S E ++DAAP + LAS +
Sbjct: 106 SPLGQHHDTTLFRRLLCPDPVCRVCNRATADIQRLLSWESLKDAAPSVSPLASSASGAES 165
Query: 111 PQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPPALFLTHHTPLILWPALL 167
LASTPS + PE +L RP P PP PLIL P L+
Sbjct: 166 SFTLASTPS-------------ATTPEDLILSSRPKPSPP-------PPLILSPDLI 202
>gi|223671858 hypothetical protein LOC389761 [Homo sapiens]
Length = 917
Score = 46.2 bits (108), Expect = 2e-05
Identities = 42/117 (35%), Positives = 51/117 (43%), Gaps = 21/117 (17%)
Query: 52 SLLGTHLDKGDFGQLSGPEPPGEVGKRAPDGASRS-SLEPMEDAAPIIYLLASPDPRIKH 110
S LG H D F +L P+P V RA R S E ++DAAP + LAS +
Sbjct: 106 SPLGQHHDTTLFRRLLCPDPVCRVCNRATADIQRLLSWESLKDAAPSVSPLASSASGAES 165
Query: 111 PQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPPALFLTHHTPLILWPALL 167
LASTPS + PE +L RP P PP PLIL P L+
Sbjct: 166 SFTLASTPS-------------ATTPEDLILSSRPKPSPP-------PPLILSPDLI 202
>gi|169168458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 353
Score = 43.5 bits (101), Expect = 1e-04
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 57 HLDKGDFGQLS------GPEPPGEVGKRAPDGASRSSLEPMEDAAPIIYLLAS-PDPRIK 109
H +G G+ S P P P ++S+E + + + AS P +K
Sbjct: 146 HRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPKTSIESLGSPSSLSSSQASEPLCPLK 205
Query: 110 HPQDL--ASTPSPGPMTTS-----VSSLSASQPPEPSLLLERPSPKP 149
HP AST SP P +++ +SSLS+SQPPEP L+ PS KP
Sbjct: 206 HPSHRPPASTLSPNPTSSTESLGYLSSLSSSQPPEPLRPLKHPSHKP 252
Score = 38.1 bits (87), Expect = 0.004
Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 72 PGEVGKRAPDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTT-----S 126
PG V K AP R A+P + ++ P P LAS PS P T+ S
Sbjct: 134 PGPVYKPAPARNHRPR-GGRGKASPTSFHVSPRAP----PAPLASMPSSVPKTSIESLGS 188
Query: 127 VSSLSASQPPEPSLLLERPSPKPPALFLT 155
SSLS+SQ EP L+ PS +PPA L+
Sbjct: 189 PSSLSSSQASEPLCPLKHPSHRPPASTLS 217
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 40.8 bits (94), Expect = 6e-04
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 71 PPGEVGKRAPDGASRSSLEPMEDAAPI-IYLLASPDP--RIKHPQDLASTPSPGPMTTSV 127
PP P + +PM + + +L+SP P +++ PQ + P P P
Sbjct: 402 PPTTAVSAIPSSSIPLGRQPMAQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQP 461
Query: 128 SS-----LSASQPPEPSLLLERPSPKPPALFLTHHTP 159
SS +S+ P PS L PSP+P +T TP
Sbjct: 462 SSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTP 498
Score = 28.9 bits (63), Expect = 2.6
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 69 PEPPGEVGKRAPDGASRSSLEPMEDAAPIIYLLASPDPR-------IKHPQDLASTPSPG 121
P+P + G+ + S S P + L SP P+ + PQ+ S PSPG
Sbjct: 452 PQPSPQPGQPSSQPNSNVSSGPAPSPSSF---LPSPSPQPSQSPVTARTPQNF-SVPSPG 507
Query: 122 PMTTSVSSLSASQP 135
P+ T V+ S P
Sbjct: 508 PLNTPVNPSSVMSP 521
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 39.3 bits (90), Expect = 0.002
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 100 LLASPDP--RIKHPQDLASTPSPGPMTTSVSS-----LSASQPPEPSLLLERPSPKPPAL 152
+L+SP P +++ PQ + P P P SS +S+ P PS L PSP+P
Sbjct: 392 MLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSPSSFLPSPSPQPSQS 451
Query: 153 FLTHHTP 159
+T TP
Sbjct: 452 PVTARTP 458
Score = 28.9 bits (63), Expect = 2.6
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 69 PEPPGEVGKRAPDGASRSSLEPMEDAAPIIYLLASPDPR-------IKHPQDLASTPSPG 121
P+P + G+ + S S P + L SP P+ + PQ+ S PSPG
Sbjct: 412 PQPSPQPGQPSSQPNSNVSSGPAPSPSSF---LPSPSPQPSQSPVTARTPQNF-SVPSPG 467
Query: 122 PMTTSVSSLSASQP 135
P+ T V+ S P
Sbjct: 468 PLNTPVNPSSVMSP 481
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 38.9 bits (89), Expect = 0.002
Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 20/103 (19%)
Query: 69 PEPPGEVGKRAPD----GASRSSLEPME-DAAPIIYLLASP--DPRIKHPQDLASTPSPG 121
P PP + AP A RSSL P + + P + +SP DP + H D A TP P
Sbjct: 214 PPPPPAISLNAPSYNWGAALRSSLVPSDLGSPPAPHASSSPPSDPPLFHCSD-ALTPPPL 272
Query: 122 PMTTSVSSLSASQPPEPSLLLERPSPKPPALFLTHHTPLILWP 164
P + ++ P P P+ +PP T H PL+L P
Sbjct: 273 PPSNNL-------PAHPG-----PASQPPVSSATMHLPLVLGP 303
Score = 30.0 bits (66), Expect = 1.1
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 46 LLSQLQSLLGTHLDKGDFGQLSGPEPPGEVGKRA-PDGASRSSLEPMEDAAPIIYLLAS- 103
LL L SL + Q GP G++G + P G + L E ++P+ LL S
Sbjct: 744 LLGDLSSLTSSPGALPSLLQPPGPLLSGQLGLQLLPGGGAPPPLS--EASSPLACLLQSL 801
Query: 104 ------PDPRIKHPQDLASTPSPGPMTTSVSSLS----ASQPPEPSLLLERPSPK 148
P+ P+ AS P P +S+L+ + PP P LL R S K
Sbjct: 802 QIPPEQPEAPCLPPESPASALEPEPARPPLSALAPPHGSPDPPVPELLTGRGSGK 856
Score = 29.6 bits (65), Expect = 1.5
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 25/105 (23%)
Query: 71 PPGEVGKRAPDGASRSSLEPME---DAAPIIY----------------LLASPDPRIKHP 111
P G+ + +GA S EP D +P+++ L A+ DP P
Sbjct: 633 PTAGDGEGSAEGAGGPSGEPFSGLGDLSPLLFPPLSAPPTLIALNSALLAATLDPPSGTP 692
Query: 112 QD--LASTPSPGPMTTSVSSLSASQPPEPSLLLERP--SPKPPAL 152
+ S P PGP T+SV+ +A+ P S L + P S +PP L
Sbjct: 693 PQPCVLSAPQPGPPTSSVT--TATTDPGASSLGKAPSNSGRPPQL 735
Score = 27.7 bits (60), Expect = 5.7
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 86 SSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEP 138
S P E A+P ++ SP P P P P TT ++ S PPEP
Sbjct: 122 SHSSPGEGASPQMFHTVSPGPPSARP------PCRVPPTTPLNGGPGSLPPEP 168
Score = 26.9 bits (58), Expect = 9.7
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 104 PDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPPALFLTHHTPLI 161
P+P + P +PG +++ PP PS LL PS PP+ L PL+
Sbjct: 573 PEPLLPPPGGPGPPLAPGEPEGPSLLVASLLPPPPSDLLPPPS-APPSNLLASFLPLL 629
>gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens]
Length = 931
Score = 38.5 bits (88), Expect = 0.003
Identities = 33/109 (30%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 45 DLLSQLQSLLGTHLDKGDFGQLSGPEPPG---EVGKRAPDGASRSSLEPMEDAAPIIYLL 101
DL LQ L GT L EPPG + ++ + SS + M+D I+
Sbjct: 705 DLEHPLQPLFGTPTS------LLKKEPPGYEEAMSQQPKQQENGSSSQQMDDLFDILIQS 758
Query: 102 ASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPP 150
K P L P P T S L+A P PS L + +P PP
Sbjct: 759 GEISADFKEPPSLPGKEKPSPKTVCGSPLAAQ--PSPSAELPQAAPPPP 805
>gi|239742749 PREDICTED: hypothetical protein XP_002342626 [Homo
sapiens]
Length = 277
Score = 38.1 bits (87), Expect = 0.004
Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 72 PGEVGKRAPDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTT-----S 126
PG V K AP R A+P + ++ P P LAS PS P T+ S
Sbjct: 134 PGPVYKPAPARNHRPR-GGRGKASPTSFHVSPRAP----PAPLASMPSSVPKTSIESLGS 188
Query: 127 VSSLSASQPPEPSLLLERPSPKPPALFLT 155
SSLS+SQ EP L+ PS +PPA L+
Sbjct: 189 PSSLSSSQASEPLCPLKHPSHRPPASTLS 217
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 37.0 bits (84), Expect = 0.009
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 90 PMEDAAPIIYL---LASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQP--PEPSLLLER 144
P A P+ L L++P P + P A PGP T V LS P P PS+ LE
Sbjct: 406 PGPSATPVPELPGPLSTPVPELPGPPATAVPELPGPSVTPVPQLSQELPGLPAPSMGLEP 465
Query: 145 PS--PKPPAL 152
P P+PP +
Sbjct: 466 PQEVPEPPVM 475
Score = 28.9 bits (63), Expect = 2.6
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 69 PEPPGEVGKRAPDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVS 128
P P E P+ S A P Y +++ DP + + + P P P S
Sbjct: 1200 PSSPSEESVSQPEPPVSQSEISEPSAVPTDYSVSASDPSVLVSEAAVTVPEPPPEPESSI 1259
Query: 129 SLSASQPPEPSLLLERPS--PKPPALFLTHHTP 159
+L+ P E +++ E P+ P + TP
Sbjct: 1260 TLT---PVESAVVAEEHEVVPERPVTCMVSETP 1289
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 37.0 bits (84), Expect = 0.009
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 90 PMEDAAPIIYL---LASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQP--PEPSLLLER 144
P A P+ L L++P P + P A PGP T V LS P P PS+ LE
Sbjct: 406 PGPSATPVPELPGPLSTPVPELPGPPATAVPELPGPSVTPVPQLSQELPGLPAPSMGLEP 465
Query: 145 PS--PKPPAL 152
P P+PP +
Sbjct: 466 PQEVPEPPVM 475
Score = 28.9 bits (63), Expect = 2.6
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 69 PEPPGEVGKRAPDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVS 128
P P E P+ S A P Y +++ DP + + + P P P S
Sbjct: 1200 PSSPSEESVSQPEPPVSQSEISEPSAVPTDYSVSASDPSVLVSEAAVTVPEPPPEPESSI 1259
Query: 129 SLSASQPPEPSLLLERPS--PKPPALFLTHHTP 159
+L+ P E +++ E P+ P + TP
Sbjct: 1260 TLT---PVESAVVAEEHEVVPERPVTCMVSETP 1289
>gi|109240536 DC-STAMP domain containing 2 [Homo sapiens]
Length = 773
Score = 36.6 bits (83), Expect = 0.012
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 26/116 (22%)
Query: 41 EETWDLLSQLQSLLGTHL------DKGDFGQLSGPEPPGEVGKRAPDGASRSSLEPMEDA 94
E+ W L QLQ +LG L + D + GP+ + +P+ +A
Sbjct: 676 EQAWLLQQQLQEVLGRSLSMESTSESSDLDEEKGPQQ------------RKHGQQPLPEA 723
Query: 95 APIIYLLASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQP--PEPSLLLERPSPK 148
+ +L SP+P P + +S P S S+ S P P+PS P PK
Sbjct: 724 HQPVSILTSPEPH--RPPETSSATKGAPTPASEPSVPLSPPSLPDPS----HPPPK 773
>gi|214831495 hypothetical protein LOC285679 [Homo sapiens]
Length = 277
Score = 36.6 bits (83), Expect = 0.012
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 114 LASTPSPGPMTT-----SVSSLSASQPPEPSLLLERPSPKPPALFLT 155
LAS PS P T+ S SSLS+S+P EP L+ PS +PPA L+
Sbjct: 171 LASMPSSVPKTSVESLGSPSSLSSSKPREPLCPLKHPSHQPPASTLS 217
>gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]
Length = 844
Score = 35.8 bits (81), Expect = 0.021
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 79 APDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSPGP 122
+P+ A SL P AAPI Y LA P ++HP P PGP
Sbjct: 616 SPNSAHAVSLPP---AAPISYRLAEQQPLLRHPAPPGPGPGPGP 656
>gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]
Length = 852
Score = 35.8 bits (81), Expect = 0.021
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 79 APDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSPGP 122
+P+ A SL P AAPI Y LA P ++HP P PGP
Sbjct: 624 SPNSAHAVSLPP---AAPISYRLAEQQPLLRHPAPPGPGPGPGP 664
>gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]
Length = 858
Score = 35.8 bits (81), Expect = 0.021
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 79 APDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSPGP 122
+P+ A SL P AAPI Y LA P ++HP P PGP
Sbjct: 630 SPNSAHAVSLPP---AAPISYRLAEQQPLLRHPAPPGPGPGPGP 670
>gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]
Length = 850
Score = 35.8 bits (81), Expect = 0.021
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 79 APDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSPGP 122
+P+ A SL P AAPI Y LA P ++HP P PGP
Sbjct: 622 SPNSAHAVSLPP---AAPISYRLAEQQPLLRHPAPPGPGPGPGP 662
>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
Length = 981
Score = 35.8 bits (81), Expect = 0.021
Identities = 39/134 (29%), Positives = 51/134 (38%), Gaps = 19/134 (14%)
Query: 29 AERACRECPR--GLEETWDLLSQLQSLLGTHLDKGDFGQLSGPEPPGEVGKRAPDGASRS 86
AE E P+ G E +W++ S D D GP+P APD S+
Sbjct: 281 AEELPVETPKRAGAEVSWEVSSPGPP--PKQADLPDAKDSPGPQPTDPPASEAPDRPSKP 338
Query: 87 SLEPMEDAAPIIYLLASPDPRIKHPQDLASTPS---PGP------MTTSVSSLSASQPPE 137
M A PI SP R++ + TP PGP + + S + A QP E
Sbjct: 339 ERAAMNGADPI-----SPQ-RVRGAVEAPGTPKSLIPGPSDPGPAVNRTESPMGALQPDE 392
Query: 138 PSLLLERPSPKPPA 151
RP PPA
Sbjct: 393 AEEWPGRPQSHPPA 406
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 35.4 bits (80), Expect = 0.027
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 67 SGPEPPGEVGKRAPDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTS 126
S P+P G R P P +DAAP + L+S P + P P P +
Sbjct: 270 SQPKPKGLQALRPPQVTP-----PRKDAAPALGPLSSSPLATPSPSGTKARPVP-PPDNA 323
Query: 127 VSSLSASQPPEPSLL----LERPSPKPPALFLTHHTP 159
+ L A+ PP P L L PSP P T +P
Sbjct: 324 ATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSP 360
Score = 32.3 bits (72), Expect = 0.23
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 68 GPEPPGEVGKRAPDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLA-STPSPGPMTTS 126
GP + +P G + P ++AA + P P + P LA +PS P +
Sbjct: 297 GPLSSSPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQT 356
Query: 127 VSSLSASQPPE-PSLLLERPSPKPPAL 152
+ S A+ P + P + P PP+L
Sbjct: 357 LPSPPATPPSQAPPSMTTPPMQAPPSL 383
Score = 30.4 bits (67), Expect = 0.88
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 71 PPGEVGKRAPDGASRSSLE--PMEDAAPIIYLLASPDPRIKHPQDLASTP---SPGPMTT 125
P +AP + L+ P A+P + A+P P+ P LA+ P P P +
Sbjct: 687 PSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQA--PPPLAAPPLQVPPSPPAS 744
Query: 126 SVSSLSASQPPEPSLLLERP----SPKPPA 151
S SA+ PP LL P P PPA
Sbjct: 745 PPMSPSATPPPRVPPLLAAPPLQVPPSPPA 774
Score = 28.9 bits (63), Expect = 2.6
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 80 PDGASRSSLEPMEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPS 139
P + LE + AP AS H + P+P P+ S L+ P PS
Sbjct: 527 PASLTTPPLENLPSLAPPPLQTASAPLTTPH-LETPPCPAPCPLQAPPSPLTTPPPETPS 585
Query: 140 LLLERPSPKPPAL 152
+ P PPAL
Sbjct: 586 SIATPPPQAPPAL 598
Score = 27.3 bits (59), Expect = 7.4
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 101 LASPDPRIKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLLLERPSPKPPA 151
+A+P P+ P LAS P G + +S L+ P P L P PP+
Sbjct: 587 IATPPPQA--PPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPS 635
Score = 27.3 bits (59), Expect = 7.4
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 71 PPGEVGKRAPDGASRSSL-EPMEDAAPIIYLLASPDPRIKHPQDLASTPSPGPMTTSVS- 128
PP +V P S L +P A P LA+P P P AS P P + S S
Sbjct: 764 PPLQVPPSPPASLPMSPLAKPPPQAPPA---LATP-PLQALPSPPASFPGQAPFSPSASL 819
Query: 129 --SLSASQPPEPSLLLERP----SPKPPA 151
S A+ PP+ +L P P PPA
Sbjct: 820 PMSPLATPPPQAPPVLAAPLLQVPPSPPA 848
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,099,563
Number of Sequences: 37866
Number of extensions: 616503
Number of successful extensions: 5996
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 371
Number of HSP's that attempted gapping in prelim test: 4424
Number of HSP's gapped (non-prelim): 1843
length of query: 182
length of database: 18,247,518
effective HSP length: 96
effective length of query: 86
effective length of database: 14,612,382
effective search space: 1256664852
effective search space used: 1256664852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.