Guide to the Human Genome
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Name: FLJ43859 Sequence: fasta or formatted (917aa) NCBI GI: 223671858
Description:

hypothetical protein LOC389761

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         35           2
 C cysteine            2.0         18           1
 D aspartate           3.7         34           1
 E glutamate           5.7         52           3
 F phenylalanine       4.6         42           2
 G glycine             4.3         39           2
 H histidine           4.7         43           2
 I isoleucine          3.9         36           2
 K lysine              5.1         47           2
 L leucine            11.9        109           2
 M methionine          1.9         17           2
 N asparagine          3.9         36           2
 P proline             9.7         89           4
 Q glutamine           5.1         47           2
 R arginine            4.7         43           2
 S serine             13.5        124           2
 T threonine           4.7         43           2
 V valine              4.8         44           2
 W tryptophan          1.2         11           2
 Y tyrosine            0.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC389761 
FLJ44082              0.997   hypothetical protein LOC389762 
FLJ46321              0.901   hypothetical protein LOC389763 
FAM75A5               0.115   hypothetical protein LOC727905 
FAM75A6               0.115   hypothetical protein LOC389730 
FAM75A4               0.115   PREDICTED: family with sequence similarity 75, memb...
FAM75A3               0.114   hypothetical protein LOC727830 
FAM75A7               0.114   hypothetical protein LOC26165 
FAM75A2               0.112   hypothetical protein LOC642265 
FAM75A1               0.112   hypothetical protein LOC647060 
FAM75A4               0.109   PREDICTED: family with sequence similarity 75, memb...
C9orf79               0.076   chromosome 9 open reading frame 79 
FAM75C1               0.055   family with sequence similarity 75, member C1 [Homo...
C9orf144B             0.039   hypothetical protein LOC259308 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
SETD1A                0.012   SET domain containing 1A 
FAM75B                0.011   hypothetical protein LOC404770 
ZFHX4                 0.011   zinc finger homeodomain 4 
SOS2                  0.010   son of sevenless homolog 2 
PRR12                 0.010   proline rich 12 
FLJ22184              0.010   PREDICTED: hypothetical protein LOC80164 
SETD1B                0.010   SET domain containing 1B 
FLJ22184              0.010   PREDICTED: hypothetical protein FLJ22184 
PRG4                  0.010   proteoglycan 4 isoform D 
PRG4                  0.010   proteoglycan 4 isoform C 
PRG4                  0.010   proteoglycan 4 isoform B 
PRG4                  0.010   proteoglycan 4 isoform A 
ZNF462                0.010   zinc finger protein 462 
ENAH                  0.009   enabled homolog isoform a 
ENAH                  0.009   enabled homolog isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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