Guide to the Human Genome
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Name: ATPGD1 Sequence: fasta or formatted (827aa) NCBI GI: 148839342
Description:

ATP-grasp domain containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2        101           3
 C cysteine            3.1         26           2
 D aspartate           3.9         32           2
 E glutamate           7.4         61           4
 F phenylalanine       2.9         24           1
 G glycine            10.2         84           2
 H histidine           2.9         24           3
 I isoleucine          1.1          9           1
 K lysine              2.2         18           2
 L leucine            16.2        134           3
 M methionine          1.7         14           1
 N asparagine          1.1          9           1
 P proline             6.5         54           2
 Q glutamine           3.6         30           2
 R arginine            7.0         58           2
 S serine              4.1         34           2
 T threonine           3.6         30           1
 V valine              7.9         65           2
 W tryptophan          1.2         10           1
 Y tyrosine            1.2         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-grasp domain containing 1 
RASA1                 0.007   RAS p21 protein activator 1 isoform 1 
CPS1                  0.006   carbamoyl-phosphate synthetase 1 isoform c 
CPS1                  0.006   carbamoyl-phosphate synthetase 1 isoform a precurso...
CPS1                  0.006   carbamoyl-phosphate synthetase 1 isoform b precursor...
LRFN4                 0.005   leucine rich repeat and fibronectin type III domain ...
CD1E                  0.004   CD1E antigen isoform a precursor 
CD1E                  0.004   CD1E antigen isoform d precursor 
CD1E                  0.004   CD1E antigen isoform c precursor 
CD1E                  0.004   CD1E antigen isoform b precursor 
LOC100292222          0.004   PREDICTED: hypothetical protein 
LOC100291052          0.004   PREDICTED: hypothetical protein XP_002346814 
LOC100289558          0.004   PREDICTED: hypothetical protein XP_002342683 
LOC100294282          0.004   PREDICTED: hypothetical protein XP_002344062 
LOC100294227          0.004   PREDICTED: hypothetical protein 
LOC100294165          0.004   PREDICTED: hypothetical protein 
LOC100294119          0.004   PREDICTED: hypothetical protein 
ELN                   0.004   elastin isoform e precursor 
ELN                   0.004   elastin isoform d precursor 
ELN                   0.004   elastin isoform c precursor 
ELN                   0.004   elastin isoform b precursor 
ELN                   0.004   elastin isoform a precursor 
HCFC1                 0.004   host cell factor 1 
SFRS12                0.004   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.004   splicing factor, arginine/serine-rich 12 isoform b [...
FOSB                  0.004   FBJ murine osteosarcoma viral oncogene homolog B is...
LOC100293922          0.004   PREDICTED: hypothetical protein 
LOC100291358          0.004   PREDICTED: hypothetical protein XP_002347390 
SOCS3                 0.004   suppressor of cytokine signaling 3 
CD1D                  0.004   CD1D antigen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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