Guide to the Human Genome
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Name: LOC100294119 Sequence: fasta or formatted (110aa) NCBI GI: 239513969
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         15           2
 C cysteine            3.6          4           1
 D aspartate           0.9          1           1
 E glutamate           4.5          5           1
 F phenylalanine       2.7          3           1
 G glycine            10.9         12           1
 H histidine           2.7          3           1
 I isoleucine          3.6          4           1
 K lysine              1.8          2           1
 L leucine            10.0         11           1
 M methionine          0.9          1           1
 N asparagine          0.0          0           0
 P proline             6.4          7           1
 Q glutamine           6.4          7           3
 R arginine           13.6         15           2
 S serine              6.4          7           1
 T threonine           5.5          6           1
 V valine              3.6          4           1
 W tryptophan          0.9          1           1
 Y tyrosine            1.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292222          1.000   PREDICTED: hypothetical protein 
LOC100291052          1.000   PREDICTED: hypothetical protein XP_002346814 
LOC100289558          1.000   PREDICTED: hypothetical protein XP_002342683 
LOC100294282          1.000   PREDICTED: hypothetical protein XP_002344062 
LOC100294227          1.000   PREDICTED: hypothetical protein 
LOC100294165          1.000   PREDICTED: hypothetical protein 
ATPGD1                0.035   ATP-grasp domain containing 1 
KRT82                 0.010   keratin 82 
PCOLCE                0.010   procollagen C-endopeptidase enhancer 
LOC100289922          0.005   PREDICTED: hypothetical protein XP_002347871 
ZNF672                0.005   zinc finger protein 672 
PRMT6                 0.005   protein arginine methyltransferase 6 
LOC730183             0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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