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Search of human proteins with 148664240
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
sapiens]
(440 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi... 897 0.0
gi|148664194 hypothetical protein LOC146556 isoform 2 [Homo sapi... 727 0.0
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 105 6e-23
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 105 6e-23
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 103 4e-22
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 103 4e-22
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 89 6e-18
gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ... 79 6e-15
gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ... 79 6e-15
gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ... 79 6e-15
gi|149588643 zinc finger protein 283 [Homo sapiens] 64 2e-10
gi|121583542 mitogen-activated protein kinase kinase kinase 15 [... 61 2e-09
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens] 60 4e-09
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 57 3e-08
gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo... 57 3e-08
gi|193794843 BEN domain containing 2 [Homo sapiens] 57 4e-08
gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN... 56 7e-08
gi|238908517 colony stimulating factor 2 receptor alpha chain is... 54 3e-07
gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens] 52 8e-07
gi|62243734 signal transducing adaptor family member 2 isoform 1... 52 1e-06
gi|205830426 solute carrier family 39 (zinc transporter), member... 51 2e-06
gi|40789270 zinc finger protein 573 [Homo sapiens] 50 5e-06
gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo sa... 48 2e-05
gi|59933284 RUN domain containing 2B [Homo sapiens] 47 4e-05
gi|223029500 EF-hand calcium binding domain 5 isoform b [Homo sa... 46 6e-05
gi|61744475 solute carrier family 3, member 2 isoform a [Homo sa... 44 2e-04
gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [H... 44 3e-04
gi|168693643 decay accelerating factor for complement isoform 2 ... 44 4e-04
gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens] 44 4e-04
gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo sap... 44 4e-04
>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
sapiens]
Length = 440
Score = 897 bits (2318), Expect = 0.0
Identities = 440/440 (100%), Positives = 440/440 (100%)
Query: 1 MSARGRWEGGGRRACRGSLGLARAQGAERVTSSEQRPAMASLGLLLLLLLTALPPLWSSS 60
MSARGRWEGGGRRACRGSLGLARAQGAERVTSSEQRPAMASLGLLLLLLLTALPPLWSSS
Sbjct: 1 MSARGRWEGGGRRACRGSLGLARAQGAERVTSSEQRPAMASLGLLLLLLLTALPPLWSSS 60
Query: 61 LPGLDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQE 120
LPGLDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQE
Sbjct: 61 LPGLDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQE 120
Query: 121 PLLQPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDAS 180
PLLQPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDAS
Sbjct: 121 PLLQPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDAS 180
Query: 181 LVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLL 240
LVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLL
Sbjct: 181 LVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLL 240
Query: 241 FFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGG 300
FFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGG
Sbjct: 241 FFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGG 300
Query: 301 FSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQYQQHFSRRVKRREKQFPDSRS 360
FSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQYQQHFSRRVKRREKQFPDSRS
Sbjct: 301 FSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQYQQHFSRRVKRREKQFPDSRS 360
Query: 361 VAQAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFHHVAHA 420
VAQAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFHHVAHA
Sbjct: 361 VAQAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFHHVAHA 420
Query: 421 GLELLISRDPPTSGSQSVGL 440
GLELLISRDPPTSGSQSVGL
Sbjct: 421 GLELLISRDPPTSGSQSVGL 440
>gi|148664194 hypothetical protein LOC146556 isoform 2 [Homo
sapiens]
Length = 399
Score = 727 bits (1877), Expect = 0.0
Identities = 358/360 (99%), Positives = 358/360 (99%)
Query: 1 MSARGRWEGGGRRACRGSLGLARAQGAERVTSSEQRPAMASLGLLLLLLLTALPPLWSSS 60
MSARGRWEGGGRRACRGSLGLARAQGAERVTSSEQRPAMASLGLLLLLLLTALPPLWSSS
Sbjct: 1 MSARGRWEGGGRRACRGSLGLARAQGAERVTSSEQRPAMASLGLLLLLLLTALPPLWSSS 60
Query: 61 LPGLDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQE 120
LPGLDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQE
Sbjct: 61 LPGLDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQE 120
Query: 121 PLLQPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDAS 180
PLLQPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDAS
Sbjct: 121 PLLQPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDAS 180
Query: 181 LVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLL 240
LVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLL
Sbjct: 181 LVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLL 240
Query: 241 FFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGG 300
FFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGG
Sbjct: 241 FFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGG 300
Query: 301 FSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQYQQHFSRRVKRREKQFPDSRS 360
FSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQYQQHFSRRVKRREKQFPD S
Sbjct: 301 FSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQYQQHFSRRVKRREKQFPDGCS 360
>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 105 bits (263), Expect = 6e-23
Identities = 55/78 (70%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Query: 363 QAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFHHVAHAGL 422
QAGV+ R+L SLQPLPPGFK+FSCL LPSSWDY P ANF + LVET F HV AGL
Sbjct: 308 QAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANF-VVLVETVFLHVDQAGL 366
Query: 423 ELLISRDPPTSGSQSVGL 440
ELLIS DPPTS SQS G+
Sbjct: 367 ELLISGDPPTSASQSAGI 384
>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 105 bits (263), Expect = 6e-23
Identities = 55/78 (70%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Query: 363 QAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFHHVAHAGL 422
QAGV+ R+L SLQPLPPGFK+FSCL LPSSWDY P ANF + LVET F HV AGL
Sbjct: 308 QAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANF-VVLVETVFLHVDQAGL 366
Query: 423 ELLISRDPPTSGSQSVGL 440
ELLIS DPPTS SQS G+
Sbjct: 367 ELLISGDPPTSASQSAGI 384
>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
Length = 402
Score = 103 bits (256), Expect = 4e-22
Identities = 54/78 (69%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Query: 363 QAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFHHVAHAGL 422
QAGV+ R+L SLQPLPPGFK+FSCL LPSSW Y P ANF + LVET F HV AGL
Sbjct: 308 QAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANF-VVLVETVFLHVDQAGL 366
Query: 423 ELLISRDPPTSGSQSVGL 440
ELLIS DPPTS SQS G+
Sbjct: 367 ELLISGDPPTSASQSAGI 384
>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 103 bits (256), Expect = 4e-22
Identities = 54/78 (69%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Query: 363 QAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFHHVAHAGL 422
QAGV+ R+L SLQPLPPGFK+FSCL LPSSW Y P ANF + LVET F HV AGL
Sbjct: 308 QAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANF-VVLVETVFLHVDQAGL 366
Query: 423 ELLISRDPPTSGSQSVGL 440
ELLIS DPPTS SQS G+
Sbjct: 367 ELLISGDPPTSASQSAGI 384
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
Length = 1079
Score = 89.4 bits (220), Expect = 6e-18
Identities = 47/78 (60%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 363 QAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFHHVAHAGL 422
+AG+QW +L SLQP PPGFK+FS L LP+SW+YR +P NF IF VETGFHHV A L
Sbjct: 995 RAGMQWCDLSSLQPPPPGFKRFSHLSLPNSWNYRHLPSCPTNFCIF-VETGFHHVGQACL 1053
Query: 423 ELLISRDPPTSGSQSVGL 440
ELL S S SQS G+
Sbjct: 1054 ELLTSGGLLASASQSAGI 1071
>gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 79.3 bits (194), Expect = 6e-15
Identities = 47/85 (55%), Positives = 55/85 (64%), Gaps = 5/85 (5%)
Query: 357 DSRSVAQAGVQW-RNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFH 415
+S SV QAGVQW +LGSLQP PPGF SCL LP SWDYR PP+ ANF IF +
Sbjct: 128 ESCSVTQAGVQWCDDLGSLQPPPPGF---SCLSLPGSWDYRHPPPHPANFCIFSRDE-VS 183
Query: 416 HVAHAGLELLISRDPPTSGSQSVGL 440
AG++LL + D PT SQSV +
Sbjct: 184 TPTQAGVKLLTASDLPTLASQSVAI 208
>gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 79.3 bits (194), Expect = 6e-15
Identities = 47/85 (55%), Positives = 55/85 (64%), Gaps = 5/85 (5%)
Query: 357 DSRSVAQAGVQW-RNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFH 415
+S SV QAGVQW +LGSLQP PPGF SCL LP SWDYR PP+ ANF IF +
Sbjct: 128 ESCSVTQAGVQWCDDLGSLQPPPPGF---SCLSLPGSWDYRHPPPHPANFCIFSRDE-VS 183
Query: 416 HVAHAGLELLISRDPPTSGSQSVGL 440
AG++LL + D PT SQSV +
Sbjct: 184 TPTQAGVKLLTASDLPTLASQSVAI 208
>gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 79.3 bits (194), Expect = 6e-15
Identities = 47/85 (55%), Positives = 55/85 (64%), Gaps = 5/85 (5%)
Query: 357 DSRSVAQAGVQW-RNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFH 415
+S SV QAGVQW +LGSLQP PPGF SCL LP SWDYR PP+ ANF IF +
Sbjct: 128 ESCSVTQAGVQWCDDLGSLQPPPPGF---SCLSLPGSWDYRHPPPHPANFCIFSRDE-VS 183
Query: 416 HVAHAGLELLISRDPPTSGSQSVGL 440
AG++LL + D PT SQSV +
Sbjct: 184 TPTQAGVKLLTASDLPTLASQSVAI 208
>gi|149588643 zinc finger protein 283 [Homo sapiens]
Length = 679
Score = 64.3 bits (155), Expect = 2e-10
Identities = 31/41 (75%), Positives = 33/41 (80%)
Query: 357 DSRSVAQAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRS 397
+SRSVAQAGVQW +LGSLQ PPGF FSCL L SSWDY S
Sbjct: 2 ESRSVAQAGVQWCDLGSLQAPPPGFTLFSCLSLLSSWDYSS 42
>gi|121583542 mitogen-activated protein kinase kinase kinase 15
[Homo sapiens]
Length = 788
Score = 60.8 bits (146), Expect = 2e-09
Identities = 26/33 (78%), Positives = 29/33 (87%)
Query: 363 QAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDY 395
+AGVQW +LGSLQPLPP FK+FSCL L SSWDY
Sbjct: 25 KAGVQWHDLGSLQPLPPRFKRFSCLSLQSSWDY 57
>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
Length = 825
Score = 60.1 bits (144), Expect = 4e-09
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 333 ELSKAIQYQQHFSRRVKRR-EKQFPDSRSVAQAGVQWRNLGSLQPLPPGFKQFSCLILPS 391
+L I ++ F++ K + ++ S SVAQ GVQW ++ SLQPL F+QFSCL LPS
Sbjct: 752 KLLMIIHDRREFAKFEKEKMNAKWDTSLSVAQPGVQWCDISSLQPLTSRFQQFSCLSLPS 811
Query: 392 SWDYR 396
+WDYR
Sbjct: 812 TWDYR 816
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 57.0 bits (136), Expect = 3e-08
Identities = 30/54 (55%), Positives = 36/54 (66%), Gaps = 7/54 (12%)
Query: 387 LILPSSWDYRSVPPYLANFYIFLVETGFHHVAHAGLELLISRDPPTSGSQSVGL 440
L LP S D++ + ++FLVE GFHHV AGLELLIS D PTS SQS G+
Sbjct: 21 LHLPDSSDFQLI-------FVFLVEMGFHHVGQAGLELLISSDLPTSASQSAGI 67
>gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo
sapiens]
Length = 165
Score = 57.0 bits (136), Expect = 3e-08
Identities = 26/34 (76%), Positives = 28/34 (82%)
Query: 357 DSRSVAQAGVQWRNLGSLQPLPPGFKQFSCLILP 390
+SR V QAGVQWR+LGSLQP PPGFKQ CL LP
Sbjct: 28 ESRCVPQAGVQWRDLGSLQPPPPGFKQVFCLSLP 61
>gi|193794843 BEN domain containing 2 [Homo sapiens]
Length = 799
Score = 56.6 bits (135), Expect = 4e-08
Identities = 28/43 (65%), Positives = 29/43 (67%)
Query: 358 SRSVAQAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPP 400
S SV QAGVQW + SLQP P G KQF L LPSSWD R PP
Sbjct: 81 SGSVTQAGVQWHDHSSLQPQPLGLKQFFHLSLPSSWDDRRTPP 123
>gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA
synthase isoform 3 [Homo sapiens]
Length = 500
Score = 55.8 bits (133), Expect = 7e-08
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 366 VQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPY 401
+Q +LGSLQP PPGF F+CL LPSSWDYR PP+
Sbjct: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPH 36
>gi|238908517 colony stimulating factor 2 receptor alpha chain
isoform f precursor [Homo sapiens]
Length = 434
Score = 53.9 bits (128), Expect = 3e-07
Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 5/53 (9%)
Query: 358 SRSVAQAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLV 410
S SV QAGVQW NLGSLQP P K+FSCL LP S D L + YI+++
Sbjct: 317 SHSVTQAGVQWHNLGSLQPPSPRLKRFSCLRLPGSDDGN-----LGSVYIYVL 364
>gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens]
Length = 819
Score = 52.4 bits (124), Expect = 8e-07
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 365 GVQWRNLGSLQPLPPGFKQFSCLILPSSWDYR 396
GVQW ++ SLQPL F+QFSCL LPS+WDYR
Sbjct: 779 GVQWCDISSLQPLTSRFQQFSCLSLPSTWDYR 810
>gi|62243734 signal transducing adaptor family member 2 isoform 1
[Homo sapiens]
Length = 449
Score = 52.0 bits (123), Expect = 1e-06
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 410 VETGFHHVAHAGLELLISRDPPTSGSQSVGL 440
VE GFHHVA AGLELL S DPPTS SQS G+
Sbjct: 358 VEKGFHHVAQAGLELLTSSDPPTSASQSAGI 388
>gi|205830426 solute carrier family 39 (zinc transporter), member 14
isoform c [Homo sapiens]
Length = 481
Score = 50.8 bits (120), Expect = 2e-06
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 360 SVAQAGVQWRNLGSLQPLPPGFKQFSCLILPSS 392
SVAQAGVQW +L SLQPLP G K+ SCL LPS+
Sbjct: 449 SVAQAGVQWCHLSSLQPLPLGLKRLSCLSLPSN 481
>gi|40789270 zinc finger protein 573 [Homo sapiens]
Length = 607
Score = 49.7 bits (117), Expect = 5e-06
Identities = 23/30 (76%), Positives = 25/30 (83%)
Query: 357 DSRSVAQAGVQWRNLGSLQPLPPGFKQFSC 386
+S SVAQAGVQW +L SLQP PP FKQFSC
Sbjct: 2 ESCSVAQAGVQWPDLSSLQPPPPRFKQFSC 31
>gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo
sapiens]
Length = 322
Score = 48.1 bits (113), Expect = 2e-05
Identities = 24/33 (72%), Positives = 24/33 (72%)
Query: 358 SRSVAQAGVQWRNLGSLQPLPPGFKQFSCLILP 390
S SV QAGVQW NLGSLQPLP G K S L LP
Sbjct: 267 SHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLP 299
>gi|59933284 RUN domain containing 2B [Homo sapiens]
Length = 249
Score = 46.6 bits (109), Expect = 4e-05
Identities = 23/41 (56%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 345 SRRVKRREKQFPD---SRSVAQAGVQWRNLGSLQPLPPGFK 382
S R R + P+ + SV QAGVQW +LGSLQPLPPGF+
Sbjct: 209 SGRKHRGHSESPEKNGAHSVTQAGVQWHDLGSLQPLPPGFR 249
>gi|223029500 EF-hand calcium binding domain 5 isoform b [Homo
sapiens]
Length = 856
Score = 46.2 bits (108), Expect = 6e-05
Identities = 22/34 (64%), Positives = 24/34 (70%)
Query: 363 QAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYR 396
QAGVQWRN SLQP PG K+ S L S+WDYR
Sbjct: 810 QAGVQWRNCSSLQPPTPGLKRSSHHRLLSNWDYR 843
>gi|61744475 solute carrier family 3, member 2 isoform a [Homo
sapiens]
Length = 661
Score = 44.3 bits (103), Expect = 2e-04
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 358 SRSVAQAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYR--------SVPPYLANFYIFL 409
S VAQ G++ L S PLP + + S + S PP LA+ +
Sbjct: 41 SHCVAQTGLEL--LASGDPLPSASQNAEMIETGSDCVTQAGLQLLASSDPPALASKNAEV 98
Query: 410 VETGFHHVAHAGLELLISRDPPTSGSQSVGL 440
ETGFHHV+ A +E L S DP S S S G+
Sbjct: 99 TETGFHHVSQADIEFLTSIDPTASASGSAGI 129
Score = 30.8 bits (68), Expect = 2.6
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 411 ETGFHHVAHAGLELLISRDPPTSGSQS 437
E G H VA GLELL S DP S SQ+
Sbjct: 38 ELGSHCVAQTGLELLASGDPLPSASQN 64
>gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [Homo
sapiens]
Length = 619
Score = 43.9 bits (102), Expect = 3e-04
Identities = 21/31 (67%), Positives = 22/31 (70%)
Query: 410 VETGFHHVAHAGLELLISRDPPTSGSQSVGL 440
VETGF HV GLELL S DPPT SQS G+
Sbjct: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGI 338
>gi|168693643 decay accelerating factor for complement isoform 2
precursor [Homo sapiens]
Length = 440
Score = 43.5 bits (101), Expect = 4e-04
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 358 SRSVAQAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRS 397
SR V QAG++W + SLQ PGFK+ LPSSW YR+
Sbjct: 362 SRPVTQAGMRWCDRSSLQSRTPGFKRSFHFSLPSSWYYRA 401
>gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]
Length = 558
Score = 43.5 bits (101), Expect = 4e-04
Identities = 21/32 (65%), Positives = 24/32 (75%)
Query: 409 LVETGFHHVAHAGLELLISRDPPTSGSQSVGL 440
L+ET FHHV+ AGLELL S D PT SQS G+
Sbjct: 235 LLETVFHHVSQAGLELLTSGDLPTLASQSAGI 266
>gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
sapiens]
Length = 365
Score = 43.5 bits (101), Expect = 4e-04
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 410 VETGFHHVAHAGLELLISRDPPTSGSQSVGL 440
+ETGFH V AGL+LL S DPP SQS G+
Sbjct: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGI 140
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,257,191
Number of Sequences: 37866
Number of extensions: 845003
Number of successful extensions: 2303
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2182
Number of HSP's gapped (non-prelim): 117
length of query: 440
length of database: 18,247,518
effective HSP length: 105
effective length of query: 335
effective length of database: 14,271,588
effective search space: 4780981980
effective search space used: 4780981980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.