Guide to the Human Genome
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Name: FATE1 Sequence: fasta or formatted (183aa) NCBI GI: 14861838
Description:

fetal and adult testis expressed transcript protein

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         20           2
 C cysteine            0.0          0           0
 D aspartate           1.6          3           1
 E glutamate           9.8         18           2
 F phenylalanine       1.6          3           1
 G glycine             7.7         14           2
 H histidine           3.3          6           1
 I isoleucine          2.7          5           2
 K lysine              4.9          9           2
 L leucine             9.3         17           1
 M methionine          6.0         11           2
 N asparagine          5.5         10           1
 P proline             3.3          6           2
 Q glutamine           6.6         12           1
 R arginine            8.7         16           2
 S serine              6.0         11           1
 T threonine           3.8          7           1
 V valine              4.4          8           1
 W tryptophan          2.2          4           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fetal and adult testis expressed transcript protein ... 
MFF                   0.055   mitochondrial fission factor 
PLEC1                 0.035   plectin 1 isoform 11 
PLEC1                 0.035   plectin 1 isoform 10 
PLEC1                 0.035   plectin 1 isoform 8 
PLEC1                 0.035   plectin 1 isoform 7 
PLEC1                 0.035   plectin 1 isoform 6 
PLEC1                 0.035   plectin 1 isoform 3 
PLEC1                 0.035   plectin 1 isoform 2 
PLEC1                 0.035   plectin 1 isoform 1 
BAIAP2                0.023   BAI1-associated protein 2 isoform 4 
BAIAP2                0.023   BAI1-associated protein 2 isoform 3 
BAIAP2                0.023   BAI1-associated protein 2 isoform 1 
BAIAP2                0.023   BAI1-associated protein 2 isoform 2 
MYH11                 0.017   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.017   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.017   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.017   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
GFAP                  0.015   glial fibrillary acidic protein isoform 2 
GFAP                  0.015   glial fibrillary acidic protein isoform 1 
FOXP3                 0.015   forkhead box P3 isoform b 
FOXP3                 0.015   forkhead box P3 isoform a 
LOC100292370          0.015   PREDICTED: hypothetical protein 
PCM1                  0.015   pericentriolar material 1 
LOC100130911          0.012   PREDICTED: hypothetical protein 
LOC100130911          0.012   PREDICTED: hypothetical protein 
LOC100130911          0.012   PREDICTED: hypothetical protein 
CCDC88B               0.012   coiled-coil domain containing 88 
PHLDB3                0.012   pleckstrin homology-like domain, family B, member 3...
GPRASP2               0.012   G protein-coupled receptor associated sorting protei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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