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Search of human proteins with 148612842
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148612842 interferon-induced transmembrane protein 3 (1-8U)
[Homo sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148612842 interferon-induced transmembrane protein 3 (1-8U) [... 274 1e-74
gi|151101191 interferon induced transmembrane protein 2 (1-8D) [... 244 2e-65
gi|150010589 interferon induced transmembrane protein 1 (9-27) [... 175 1e-44
gi|70608168 interferon induced transmembrane protein 5 [Homo sap... 87 3e-18
gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens] 52 2e-07
gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens] 37 0.006
gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens] 37 0.006
gi|169178462 PREDICTED: similar to NG5 protein [Homo sapiens] 35 0.013
gi|211904185 hypothetical protein LOC387890 [Homo sapiens] 32 0.15
gi|110578657 LOST1 [Homo sapiens] 32 0.15
gi|18426913 drebrin 1 isoform b [Homo sapiens] 31 0.25
gi|18426915 drebrin 1 isoform a [Homo sapiens] 31 0.25
gi|77681565 NG5 protein [Homo sapiens] 30 0.74
gi|154707844 transmembrane protein 91 isoform a [Homo sapiens] 30 0.74
gi|194018542 hypothetical protein LOC84529 isoform 1 [Homo sapiens] 29 0.97
gi|14210512 hypothetical protein LOC84529 isoform 2 [Homo sapiens] 29 0.97
gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo sa... 28 1.6
gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo sa... 28 1.6
gi|4758474 G protein-coupled receptor 10 [Homo sapiens] 28 1.6
gi|87196343 PDZ domain containing 2 [Homo sapiens] 28 2.2
gi|149274653 patched domain containing 2 [Homo sapiens] 28 2.8
gi|50897278 G protein-coupled receptor 139 [Homo sapiens] 28 2.8
gi|28827822 hypothetical protein LOC128346 [Homo sapiens] 28 2.8
gi|11225609 angiotensin I converting enzyme 2 precursor [Homo sa... 27 3.7
gi|39932581 hypothetical protein LOC55051 isoform 2 [Homo sapiens] 27 4.8
gi|39932583 hypothetical protein LOC55051 isoform 1 [Homo sapiens] 27 4.8
gi|153791472 MAP/microtubule affinity-regulating kinase 1 [Homo ... 27 6.3
gi|38683827 ADAM metallopeptidase with thrombospondin type 1 mot... 26 8.2
gi|116812624 tau tubulin kinase 2 [Homo sapiens] 26 8.2
>gi|148612842 interferon-induced transmembrane protein 3 (1-8U)
[Homo sapiens]
Length = 133
Score = 274 bits (701), Expect = 1e-74
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW 60
MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW
Sbjct: 1 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW 60
Query: 61 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL 120
SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL
Sbjct: 61 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL 120
Query: 121 LIVIPVLIFQAYG 133
LIVIPVLIFQAYG
Sbjct: 121 LIVIPVLIFQAYG 133
>gi|151101191 interferon induced transmembrane protein 2 (1-8D)
[Homo sapiens]
Length = 132
Score = 244 bits (622), Expect = 2e-65
Identities = 120/131 (91%), Positives = 123/131 (93%), Gaps = 1/131 (0%)
Query: 1 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW 60
MNH VQTF SPVNSGQPPNYEMLKEE EVA+LG PHNPAPP STVIHIRSETSVPDHVVW
Sbjct: 1 MNHIVQTF-SPVNSGQPPNYEMLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVW 59
Query: 61 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL 120
SLFNTLFMN CCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGI MTIL
Sbjct: 60 SLFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGIFMTIL 119
Query: 121 LIVIPVLIFQA 131
LI+IPVL+ QA
Sbjct: 120 LIIIPVLVVQA 130
>gi|150010589 interferon induced transmembrane protein 1 (9-27)
[Homo sapiens]
Length = 125
Score = 175 bits (443), Expect = 1e-44
Identities = 89/105 (84%), Positives = 94/105 (89%)
Query: 22 MLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVWSLFNTLFMNPCCLGFIAFAYS 81
M KEEHEVAVLGAP + P STVI+I SETSVPDHVVWSLFNTLF+N CCLGFIAFAYS
Sbjct: 1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS 60
Query: 82 VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTILLIVIPV 126
VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTI I++ V
Sbjct: 61 VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLV 105
>gi|70608168 interferon induced transmembrane protein 5 [Homo
sapiens]
Length = 132
Score = 87.4 bits (215), Expect = 3e-18
Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 15/100 (15%)
Query: 27 HEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVWSLFNTLFMNPCCLGFIAFAYSVKSRD 86
H LGAPH P DH++WS+F+TL++N CCLGF+A AYS+K+RD
Sbjct: 21 HTALTLGAPHPPPR---------------DHLIWSVFSTLYLNLCCLGFLALAYSIKARD 65
Query: 87 RKMVGDVTGAQAYASTAKCLNIWALILGILMTILLIVIPV 126
+K+VGD+ A+ + S AKC NI A + ++ +LL+ + V
Sbjct: 66 QKVVGDLEAARRFGSKAKCYNILAAMWTLVPPLLLLGLVV 105
>gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]
Length = 340
Score = 51.6 bits (122), Expect = 2e-07
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 14/141 (9%)
Query: 3 HTVQTFFSPVNSGQPPNY-EMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVP------ 55
H+ + SP +G PP + L EE + + H +P S H S+ + P
Sbjct: 201 HSPPSKKSPPANGAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGE 260
Query: 56 ------DHVVWSLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIW 109
D+++ ++ + F + +AFAY+V SR+ GDV GAQ AK L+I
Sbjct: 261 GTQKPRDYIILAILSC-FCPMWPVNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIV 319
Query: 110 ALILGILMTILLIVIPVLIFQ 130
AL+ G+L+ I VI + +++
Sbjct: 320 ALVGGVLIIIASCVINLGVYK 340
>gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens]
Length = 288
Score = 36.6 bits (83), Expect = 0.006
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 31 VLGAPHNPAPPTSTVIHIRSETSVPDHVVWSLFNTLFMNPCCL--GFIAFAYSVKSRDRK 88
V P P +TV H D+++ S+ TLF CCL G IA YS ++R
Sbjct: 191 VYNGPMAGVPGPATVEH---RPLPKDYMMESVLVTLF---CCLLTGLIAIVYSHEARAAL 244
Query: 89 MVGDVTGAQAYASTAKCLNIWALILGILMTILLIVIPVL 127
GD+ A+ + A+ L +++L+ G+ ++ ++ V+
Sbjct: 245 GRGDLAQAEEASRKARSLVLFSLLFGVFVSTSWVIYVVV 283
>gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens]
Length = 288
Score = 36.6 bits (83), Expect = 0.006
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 31 VLGAPHNPAPPTSTVIHIRSETSVPDHVVWSLFNTLFMNPCCL--GFIAFAYSVKSRDRK 88
V P P +TV H D+++ S+ TLF CCL G IA YS ++R
Sbjct: 191 VYNGPMAGVPGPATVEH---RPLPKDYMMESVLVTLF---CCLLTGLIAIVYSHEARAAL 244
Query: 89 MVGDVTGAQAYASTAKCLNIWALILGILMTILLIVIPVL 127
GD+ A+ + A+ L +++L+ G+ ++ ++ V+
Sbjct: 245 GRGDLAQAEEASRKARSLVLFSLLFGVFVSTSWVIYVVV 283
>gi|169178462 PREDICTED: similar to NG5 protein [Homo sapiens]
Length = 93
Score = 35.4 bits (80), Expect = 0.013
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 56 DHVVWSLFNTLFMNPCCL--GFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALIL 113
D+++ S+ TLF CCL G IA YS ++R GD+ A+ + A+ L +++L+
Sbjct: 18 DYMMESVLVTLF---CCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLF 74
Query: 114 GILMTILLIVIPVL 127
G+ ++ ++ V+
Sbjct: 75 GVFVSTSWVIYVVV 88
>gi|211904185 hypothetical protein LOC387890 [Homo sapiens]
Length = 109
Score = 32.0 bits (71), Expect = 0.15
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 51 ETSVPDHVVWSLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWA 110
+ +P + +W + F + +A +S+ S + GD GA+ AK + I +
Sbjct: 30 DVPMPKNYLWLTIVSCFCPAYPINIVALVFSIMSLNSYNDGDYEGARRLGRNAKWVAIAS 89
Query: 111 LILGILM 117
+I+G+L+
Sbjct: 90 IIIGLLI 96
>gi|110578657 LOST1 [Homo sapiens]
Length = 177
Score = 32.0 bits (71), Expect = 0.15
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 20 YEMLKEEHEVAVLGAPHNPAPPTS-------TVIHIRSETSVPDHVVWSLFNTLFMNPCC 72
++ + E H A L P +P+ +S T + + + + D+++ ++ F
Sbjct: 62 FKAISEGHLEAPL--PRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVV-ACFCPVWP 118
Query: 73 LGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTILLIVI 124
L I S+ SR G+V GA+ A+ L+I +I+GI++ ++ + +
Sbjct: 119 LNLIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTV 170
>gi|18426913 drebrin 1 isoform b [Homo sapiens]
Length = 651
Score = 31.2 bits (69), Expect = 0.25
Identities = 20/56 (35%), Positives = 23/56 (41%)
Query: 1 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPD 56
M Q P G P M E E AVL AP PA +T IH ++T D
Sbjct: 403 MEEPPQAQAPPRGPGSPAEDLMFMESAEQAVLAAPVEPATADATEIHDAADTIETD 458
>gi|18426915 drebrin 1 isoform a [Homo sapiens]
Length = 649
Score = 31.2 bits (69), Expect = 0.25
Identities = 20/56 (35%), Positives = 23/56 (41%)
Query: 1 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPD 56
M Q P G P M E E AVL AP PA +T IH ++T D
Sbjct: 401 MEEPPQAQAPPRGPGSPAEDLMFMESAEQAVLAAPVEPATADATEIHDAADTIETD 456
>gi|77681565 NG5 protein [Homo sapiens]
Length = 306
Score = 29.6 bits (65), Expect = 0.74
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 38 PAPPTSTVIHIRSETSVP-DHVVWSLFNTLFMNPCCL---GFIAFAYSVKSRDRKMVGDV 93
P PP + + P D++ ++ T+ CC G IA +V+ R GD+
Sbjct: 203 PPPPQGPGLALLEPRRPPHDYMPIAVLTTI----CCFWPTGIIAIFKAVQVRTALARGDM 258
Query: 94 TGAQAYASTAKCLNIWALILGILMTILLIVIPVLIFQA 131
A+ + A+ + +L +GI +L ++ V+I A
Sbjct: 259 VSAEIASREARNFSFISLAVGIAAMVLCTILTVVIIIA 296
>gi|154707844 transmembrane protein 91 isoform a [Homo sapiens]
Length = 172
Score = 29.6 bits (65), Expect = 0.74
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 56 DHVVWSLFNTLFMNPCC---LGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALI 112
DH+ ++F+ L CC +G AF + K+ GD+ GA A + A L + A+
Sbjct: 94 DHLGLAVFSML----CCFWPVGIAAFCLAQKTNKAWAKGDIQGAGAASRRAFLLGVLAVG 149
Query: 113 LGI 115
LG+
Sbjct: 150 LGV 152
>gi|194018542 hypothetical protein LOC84529 isoform 1 [Homo sapiens]
Length = 281
Score = 29.3 bits (64), Expect = 0.97
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 36 HNPAPPTSTVIH--IRSETSVPDHVVWSLFNTLFMNPCCLG 74
H PP+ ++I+ +R + +PD V+ + +N CC G
Sbjct: 111 HEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYG 151
>gi|14210512 hypothetical protein LOC84529 isoform 2 [Homo
sapiens]
Length = 183
Score = 29.3 bits (64), Expect = 0.97
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 36 HNPAPPTSTVIH--IRSETSVPDHVVWSLFNTLFMNPCCLG 74
H PP+ ++I+ +R + +PD V+ + +N CC G
Sbjct: 13 HEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYG 53
>gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo
sapiens]
Length = 783
Score = 28.5 bits (62), Expect = 1.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 11 PVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTS 43
P G P+ + ++H++ LG P PPTS
Sbjct: 130 PWPPGNKPSLHSVNQDHDLKPLGPKSGPTPPTS 162
>gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo
sapiens]
Length = 829
Score = 28.5 bits (62), Expect = 1.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 11 PVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTS 43
P G P+ + ++H++ LG P PPTS
Sbjct: 130 PWPPGNKPSLHSVNQDHDLKPLGPKSGPTPPTS 162
>gi|4758474 G protein-coupled receptor 10 [Homo sapiens]
Length = 370
Score = 28.5 bits (62), Expect = 1.6
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 60 WSLFNTLFMNPCCLGFIAFA-YSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMT 118
W L ++ P + +++ SVK R+R + G VT +QA A+ + L++ +++
Sbjct: 227 WGLLLVTYLLPLLVILLSYVRVSVKLRNRVVPGCVTQSQADWDRARRRRTFCLLVVVVVV 286
Query: 119 ILLIVIPVLIF 129
+ +P+ +F
Sbjct: 287 FAVCWLPLHVF 297
>gi|87196343 PDZ domain containing 2 [Homo sapiens]
Length = 2839
Score = 28.1 bits (61), Expect = 2.2
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 4 TVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVP 55
+++TF SP+ S +P + + +AVL P P T R+E P
Sbjct: 1978 SIRTFVSPLTSPKPVPEQGMWSRFHMAVLSEPDRGCPTTPKSPKCRAEGRAP 2029
>gi|149274653 patched domain containing 2 [Homo sapiens]
Length = 1392
Score = 27.7 bits (60), Expect = 2.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 60 WSLFNTLFMNPCCLGFIAF 78
WS F NPCC G + F
Sbjct: 61 WSTLGWAFTNPCCAGLVLF 79
>gi|50897278 G protein-coupled receptor 139 [Homo sapiens]
Length = 353
Score = 27.7 bits (60), Expect = 2.8
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 52 TSVPDHVVWSLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWAL 111
TSV ++W T+++ PC + FI + V RK + G ST K I
Sbjct: 177 TSVHHVLIWIHCFTVYLVPCSIFFILNSIIVYKLRRKSNFRLRG----YSTGKTTAILFT 232
Query: 112 ILGILMTILLIVIPVLIFQAYG 133
I I T+ I ++++ YG
Sbjct: 233 ITSIFATLWAPRIIMILYHLYG 254
>gi|28827822 hypothetical protein LOC128346 [Homo sapiens]
Length = 155
Score = 27.7 bits (60), Expect = 2.8
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 86 DRKMVGDVTGAQAYASTAKCLN--------IWALILGILMTILLIVIPVLIFQAY 132
D + G ++ A S A CL+ I A G+L+T+LLI LI ++Y
Sbjct: 11 DTERQGTLSTAAPTTSPAPCLSNHHNKKHLILAFCAGVLLTLLLIAFIFLIIKSY 65
>gi|11225609 angiotensin I converting enzyme 2 precursor [Homo
sapiens]
Length = 805
Score = 27.3 bits (59), Expect = 3.7
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 106 LNIWALILGILMTILLIVIPVLIF 129
++IW ++ G++M ++++ I +LIF
Sbjct: 739 VSIWLIVFGVVMGVIVVGIVILIF 762
>gi|39932581 hypothetical protein LOC55051 isoform 2 [Homo sapiens]
Length = 933
Score = 26.9 bits (58), Expect = 4.8
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 32 LGAPHNPAPPTSTVIHIRSETSVPDHVVW-----SLFNTLFMNPCCLG 74
LG P PP S + E S+ D+ ++ + FN LF C+G
Sbjct: 413 LGVPSGFTPPASCLYLAMDENSIFDNGLYDEKPLTFFNPLFSGASCVG 460
>gi|39932583 hypothetical protein LOC55051 isoform 1 [Homo sapiens]
Length = 1164
Score = 26.9 bits (58), Expect = 4.8
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 32 LGAPHNPAPPTSTVIHIRSETSVPDHVVW-----SLFNTLFMNPCCLG 74
LG P PP S + E S+ D+ ++ + FN LF C+G
Sbjct: 644 LGVPSGFTPPASCLYLAMDENSIFDNGLYDEKPLTFFNPLFSGASCVG 691
>gi|153791472 MAP/microtubule affinity-regulating kinase 1 [Homo
sapiens]
Length = 795
Score = 26.6 bits (57), Expect = 6.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 21 EMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETS 53
E L+E VA G P +P+ T H R TS
Sbjct: 617 EQLRERRSVAYNGPPASPSHETGAFAHARRGTS 649
>gi|38683827 ADAM metallopeptidase with thrombospondin type 1 motif, 7
preproprotein [Homo sapiens]
Length = 1686
Score = 26.2 bits (56), Expect = 8.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 21 EMLKEEHEVAVLGAPHNPAPPTSTV 45
E+ K++ E GAPH P P+ST+
Sbjct: 1216 EVFKDDEEPKGRGAPHLPPRPSSTL 1240
>gi|116812624 tau tubulin kinase 2 [Homo sapiens]
Length = 1244
Score = 26.2 bits (56), Expect = 8.2
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 33 GAPHNP-APPTSTVIHIRSETSVP 55
G+PHNP PP S V+ RS ++ P
Sbjct: 1132 GSPHNPKTPPKSPVVPRRSPSASP 1155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,260,582
Number of Sequences: 37866
Number of extensions: 219990
Number of successful extensions: 964
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 30
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.