Guide to the Human Genome
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Name: C15orf41 Sequence: fasta or formatted (183aa) NCBI GI: 14210512
Description:

hypothetical protein LOC84529 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {281aa} hypothetical protein LOC84529 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9          9           1
 C cysteine            4.4          8           2
 D aspartate           6.6         12           1
 E glutamate           7.1         13           2
 F phenylalanine       4.4          8           1
 G glycine             5.5         10           1
 H histidine           5.5         10           2
 I isoleucine          8.7         16           2
 K lysine              3.8          7           1
 L leucine            11.5         21           3
 M methionine          1.1          2           1
 N asparagine          3.8          7           1
 P proline             4.9          9           2
 Q glutamine           4.4          8           1
 R arginine            4.4          8           1
 S serine              5.5         10           1
 T threonine           2.2          4           1
 V valine              5.5         10           1
 W tryptophan          2.2          4           1
 Y tyrosine            3.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84529 isoform 2 
C15orf41              1.000   hypothetical protein LOC84529 isoform 1 
PECAM1                0.014   platelet/endothelial cell adhesion molecule 
IFITM3                0.011   interferon-induced transmembrane protein 3 (1-8U) [...
IFITM2                0.008   interferon induced transmembrane protein 2 (1-8D) [...
MTMR4                 0.008   myotubularin related protein 4 
MPP3                  0.008   palmitoylated membrane protein 3 
KIAA0746              0.005   hypothetical protein LOC23231 
PDE8A                 0.005   phosphodiesterase 8A isoform 2 
PDE8A                 0.005   phosphodiesterase 8A isoform 1 
ZMAT5                 0.005   zinc finger, matrin type 5 
ZMAT5                 0.005   zinc finger, matrin type 5 
POF1B                 0.005   premature ovarian failure, 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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