Guide to the Human Genome
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Name: IFITM2 Sequence: fasta or formatted (132aa) NCBI GI: 151101191
Description:

interferon induced transmembrane protein 2 (1-8D)

Referenced in:

Interferon

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         10           1
 C cysteine            2.3          3           2
 D aspartate           2.3          3           1
 E glutamate           3.8          5           2
 F phenylalanine       4.5          6           1
 G glycine             4.5          6           1
 H histidine           3.0          4           1
 I isoleucine          8.3         11           3
 K lysine              3.0          4           1
 L leucine             8.3         11           2
 M methionine          5.3          7           1
 N asparagine          5.3          7           1
 P proline             6.8          9           2
 Q glutamine           4.5          6           1
 R arginine            3.0          4           1
 S serine              6.8          9           1
 T threonine           6.1          8           1
 V valine             10.6         14           2
 W tryptophan          1.5          2           1
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon induced transmembrane protein 2 (1-8D) [... 
IFITM3                0.898   interferon-induced transmembrane protein 3 (1-8U) [...
IFITM1                0.590   interferon induced transmembrane protein 1 (9-27) [...
IFITM5                0.238   interferon induced transmembrane protein 5 
PRRT2                 0.098   proline-rich transmembrane protein 2 
LOC642515             0.057   PREDICTED: similar to NG5 protein 
LOC642515             0.057   PREDICTED: similar to NG5 protein 
LOC642515             0.057   PREDICTED: similar to NG5 protein 
TUSC5                 0.029   LOST1 
PRRT1                 0.025   NG5 protein 
LOC387890             0.025   hypothetical protein LOC387890 
TMEM91                0.020   transmembrane protein 91 isoform a 
C14orf102             0.016   hypothetical protein LOC55051 isoform 2 
C14orf102             0.016   hypothetical protein LOC55051 isoform 1 
C15orf41              0.012   hypothetical protein LOC84529 isoform 1 
C15orf41              0.012   hypothetical protein LOC84529 isoform 2 
DBN1                  0.012   drebrin 1 isoform b 
DBN1                  0.012   drebrin 1 isoform a 
TFEB                  0.012   transcription factor EB 
NPAT                  0.008   nuclear protein,  ataxia-telangiectasia locus [Homo...
GPR34                 0.008   G protein-coupled receptor 34 
GPR34                 0.008   G protein-coupled receptor 34 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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