Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C14orf102 Sequence: fasta or formatted (933aa) NCBI GI: 39932581
Description:

hypothetical protein LOC55051 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {1164aa} hypothetical protein LOC55051 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         65           2
 C cysteine            2.0         19           1
 D aspartate           5.1         48           3
 E glutamate           8.6         80           2
 F phenylalanine       4.9         46           2
 G glycine             4.7         44           2
 H histidine           2.1         20           1
 I isoleucine          4.0         37           1
 K lysine              6.9         64           2
 L leucine            12.1        113           3
 M methionine          1.9         18           1
 N asparagine          3.0         28           2
 P proline             5.4         50           2
 Q glutamine           5.4         50           2
 R arginine            5.3         49           2
 S serine              7.8         73           2
 T threonine           4.2         39           2
 V valine              4.7         44           2
 W tryptophan          2.6         24           1
 Y tyrosine            2.4         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55051 isoform 2 
C14orf102             1.000   hypothetical protein LOC55051 isoform 1 
CRNKL1                0.007   crooked neck-like 1 protein 
ELMO2                 0.006   engulfment and cell motility 2 
ELMO2                 0.006   engulfment and cell motility 2 
LOC645490             0.004   PREDICTED: similar to hCG1991922 
PDCD11                0.004   programmed cell death 11 
SART3                 0.004   squamous cell carcinoma antigen recognized by T cells...
MSL3                  0.004   male-specific lethal 3-like 1 isoform a 
MSL3                  0.004   male-specific lethal 3-like 1 isoform b 
MSL3                  0.004   male-specific lethal 3-like 1 isoform d 
ZCRB1                 0.004   zinc finger CCHC-type and RNA binding motif 1 
MAP7D2                0.004   MAP7 domain containing 2 
LOC645490             0.004   PREDICTED: similar to hCG1991922 
LOC653889             0.004   PREDICTED: similar to U5 snRNP-associated 102 kDa p...
PRPF6                 0.004   PRP6 pre-mRNA processing factor 6 homolog 
ANKRD45               0.004   ankyrin repeat domain 45 
LOC651807             0.004   PREDICTED: hypothetical protein 
CEP164                0.004   centrosomal protein 164kDa 
RNF8                  0.003   ring finger protein 8 isoform 1 
PKN1                  0.003   protein kinase N1 isoform 1 
PKN1                  0.003   protein kinase N1 isoform 2 
LOC727832             0.003   golgi autoantigen, golgin subfamily a-like 
MLLT4                 0.003   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MTUS1                 0.003   mitochondrial tumor suppressor 1 isoform 5 
MTUS1                 0.003   mitochondrial tumor suppressor 1 isoform 1 
MTUS1                 0.003   mitochondrial tumor suppressor 1 isoform 2 
MTUS1                 0.003   mitochondrial tumor suppressor 1 isoform 4 
ZNF526                0.003   zinc finger protein 526 
SEZ6                  0.003   seizure related 6 homolog isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press