Guide to the Human Genome
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Name: IFITM3 Sequence: fasta or formatted (133aa) NCBI GI: 148612842
Description:

interferon-induced transmembrane protein 3 (1-8U)

Referenced in:

Interferon

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         11           1
 C cysteine            2.3          3           2
 D aspartate           2.3          3           1
 E glutamate           3.8          5           2
 F phenylalanine       5.3          7           2
 G glycine             5.3          7           1
 H histidine           3.8          5           1
 I isoleucine          7.5         10           1
 K lysine              3.0          4           1
 L leucine             9.0         12           2
 M methionine          3.8          5           1
 N asparagine          5.3          7           1
 P proline             7.5         10           2
 Q glutamine           3.0          4           1
 R arginine            2.3          3           1
 S serine              6.8          9           1
 T threonine           6.8          9           1
 V valine              9.8         13           2
 W tryptophan          1.5          2           1
 Y tyrosine            3.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon-induced transmembrane protein 3 (1-8U) [... 
IFITM2                0.880   interferon induced transmembrane protein 2 (1-8D) [...
IFITM1                0.602   interferon induced transmembrane protein 1 (9-27) [...
IFITM5                0.249   interferon induced transmembrane protein 5 
PRRT2                 0.108   proline-rich transmembrane protein 2 
LOC642515             0.048   PREDICTED: similar to NG5 protein 
LOC642515             0.048   PREDICTED: similar to NG5 protein 
LOC642515             0.040   PREDICTED: similar to NG5 protein 
LOC387890             0.028   hypothetical protein LOC387890 
TUSC5                 0.028   LOST1 
DBN1                  0.024   drebrin 1 isoform b 
DBN1                  0.024   drebrin 1 isoform a 
PRRT1                 0.020   NG5 protein 
TMEM91                0.020   transmembrane protein 91 isoform a 
C15orf41              0.016   hypothetical protein LOC84529 isoform 1 
C15orf41              0.016   hypothetical protein LOC84529 isoform 2 
FYB                   0.012   FYN binding protein (FYB-120/130) isoform 2 
FYB                   0.012   FYN binding protein (FYB-120/130) isoform 1 
PRLHR                 0.012   G protein-coupled receptor 10 
PDZD2                 0.012   PDZ domain containing 2 
PTCHD2                0.012   patched domain containing 2 
GPR139                0.012   G protein-coupled receptor 139 
C1orf162              0.012   hypothetical protein LOC128346 
ACE2                  0.008   angiotensin I converting enzyme 2 precursor 
C14orf102             0.008   hypothetical protein LOC55051 isoform 2 
C14orf102             0.008   hypothetical protein LOC55051 isoform 1 
MARK1                 0.008   MAP/microtubule affinity-regulating kinase 1 
ADAMTS7               0.004   ADAM metallopeptidase with thrombospondin type 1 mot...
TTBK2                 0.004   tau tubulin kinase 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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