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Search of human proteins with 148226214
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148226214 t-complex 11 isoform 1 [Homo sapiens]
(516 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148226214 t-complex 11 isoform 1 [Homo sapiens] 1025 0.0
gi|8924256 t-complex 11 isoform 2 [Homo sapiens] 836 0.0
gi|224493895 t-complex 11 (mouse) like 1 [Homo sapiens] 341 8e-94
gi|224493847 t-complex 11 (mouse) like 1 [Homo sapiens] 341 8e-94
gi|22749517 t-complex 11 (mouse) like 2 [Homo sapiens] 340 2e-93
gi|58530840 desmoplakin isoform I [Homo sapiens] 35 0.13
gi|29789058 WW and C2 domain containing 1 isoform 3 [Homo sapiens] 33 0.82
gi|242247257 WW and C2 domain containing 1 isoform 2 [Homo sapiens] 33 0.82
gi|242247251 WW and C2 domain containing 1 isoform 1 [Homo sapiens] 33 0.82
gi|196259796 hypothetical protein LOC375484 [Homo sapiens] 32 1.1
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 32 1.1
gi|55741473 HECT, C2 and WW domain containing E3 ubiquitin prote... 32 1.1
gi|63252870 osteosarcoma amplified 9 isoform 4 precursor [Homo s... 32 1.4
gi|63252868 osteosarcoma amplified 9 isoform 3 precursor [Homo s... 32 1.4
gi|42734393 forkhead box R1 [Homo sapiens] 32 1.4
gi|28076869 serine (or cysteine) proteinase inhibitor, clade B (... 32 1.4
gi|190684710 EFR3 homolog B [Homo sapiens] 32 1.8
gi|13540614 coiled-coil domain containing 130 [Homo sapiens] 32 1.8
gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens] 31 2.4
gi|19743886 regulatory factor X4 isoform a [Homo sapiens] 31 3.1
gi|47132527 regulatory factor X4 isoform c [Homo sapiens] 31 3.1
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 31 3.1
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 31 3.1
gi|167234419 thyroid hormone receptor associated protein 3 [Homo... 31 3.1
gi|148833496 interferon regulatory factor 5 isoform b [Homo sapi... 30 4.1
gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens] 30 4.1
gi|15011898 regulatory factor X4 isoform b [Homo sapiens] 30 4.1
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 30 4.1
gi|209977080 REST corepressor 3 isoform a [Homo sapiens] 30 4.1
gi|8922733 REST corepressor 3 isoform d [Homo sapiens] 30 4.1
>gi|148226214 t-complex 11 isoform 1 [Homo sapiens]
Length = 516
Score = 1025 bits (2650), Expect = 0.0
Identities = 516/516 (100%), Positives = 516/516 (100%)
Query: 1 MTRGGGGGDTISKMPDVKESVPPKYPGDSEGRSCKPETSGPPQEDKSGSEDPPPFLSVTG 60
MTRGGGGGDTISKMPDVKESVPPKYPGDSEGRSCKPETSGPPQEDKSGSEDPPPFLSVTG
Sbjct: 1 MTRGGGGGDTISKMPDVKESVPPKYPGDSEGRSCKPETSGPPQEDKSGSEDPPPFLSVTG 60
Query: 61 LTETVNEVSKLSNKIGMNCDYYMEEKVLPPSSLEGKVKETVHNAFWDHLKEQLSATPPDF 120
LTETVNEVSKLSNKIGMNCDYYMEEKVLPPSSLEGKVKETVHNAFWDHLKEQLSATPPDF
Sbjct: 61 LTETVNEVSKLSNKIGMNCDYYMEEKVLPPSSLEGKVKETVHNAFWDHLKEQLSATPPDF 120
Query: 121 SCALELLKEIKEILLSLLLPRQNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMM 180
SCALELLKEIKEILLSLLLPRQNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMM
Sbjct: 121 SCALELLKEIKEILLSLLLPRQNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMM 180
Query: 181 ALLCAPVRDEAVQKLENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYER 240
ALLCAPVRDEAVQKLENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYER
Sbjct: 181 ALLCAPVRDEAVQKLENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYER 240
Query: 241 AKFQELLNKQPSLLNHTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLS 300
AKFQELLNKQPSLLNHTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLS
Sbjct: 241 AKFQELLNKQPSLLNHTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLS 300
Query: 301 PTMVLCQGFLNLLLWDLENEEFPETLLMDRTRLQELKSQLHQLTVMASVLLVASSFSGSV 360
PTMVLCQGFLNLLLWDLENEEFPETLLMDRTRLQELKSQLHQLTVMASVLLVASSFSGSV
Sbjct: 301 PTMVLCQGFLNLLLWDLENEEFPETLLMDRTRLQELKSQLHQLTVMASVLLVASSFSGSV 360
Query: 361 LFGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTAS 420
LFGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTAS
Sbjct: 361 LFGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTAS 420
Query: 421 LMGQLQNIAKKENCVCSVIDQRIHLFLKCCLVLGVQRSLLDLPGGLTLIEAELAELGQKF 480
LMGQLQNIAKKENCVCSVIDQRIHLFLKCCLVLGVQRSLLDLPGGLTLIEAELAELGQKF
Sbjct: 421 LMGQLQNIAKKENCVCSVIDQRIHLFLKCCLVLGVQRSLLDLPGGLTLIEAELAELGQKF 480
Query: 481 VNLTHHNQQVFGPYYTEILKTLISPAQALETKVESV 516
VNLTHHNQQVFGPYYTEILKTLISPAQALETKVESV
Sbjct: 481 VNLTHHNQQVFGPYYTEILKTLISPAQALETKVESV 516
>gi|8924256 t-complex 11 isoform 2 [Homo sapiens]
Length = 441
Score = 836 bits (2159), Expect = 0.0
Identities = 425/425 (100%), Positives = 425/425 (100%)
Query: 92 SLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILLSLLLPRQNRLRIEIEE 151
SLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILLSLLLPRQNRLRIEIEE
Sbjct: 17 SLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILLSLLLPRQNRLRIEIEE 76
Query: 152 ALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQV 211
ALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQV
Sbjct: 77 ALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQV 136
Query: 212 LGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLTMS 271
LGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLTMS
Sbjct: 137 LGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLTMS 196
Query: 272 PPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDLENEEFPETLLMDRT 331
PPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDLENEEFPETLLMDRT
Sbjct: 197 PPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDLENEEFPETLLMDRT 256
Query: 332 RLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFHSRPEEAIL 391
RLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFHSRPEEAIL
Sbjct: 257 RLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFHSRPEEAIL 316
Query: 392 TVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVIDQRIHLFLKCCL 451
TVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVIDQRIHLFLKCCL
Sbjct: 317 TVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVIDQRIHLFLKCCL 376
Query: 452 VLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYYTEILKTLISPAQALET 511
VLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYYTEILKTLISPAQALET
Sbjct: 377 VLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYYTEILKTLISPAQALET 436
Query: 512 KVESV 516
KVESV
Sbjct: 437 KVESV 441
>gi|224493895 t-complex 11 (mouse) like 1 [Homo sapiens]
Length = 509
Score = 341 bits (875), Expect = 8e-94
Identities = 199/500 (39%), Positives = 294/500 (58%), Gaps = 17/500 (3%)
Query: 12 SKMPDVKESVPPKYPGDSEG--RSCKPETSGPPQEDKSGSEDPPPFLSVTGLTETVNEVS 69
SK D +E + G E ++ K ++S P + + S PP F++V L ET V+
Sbjct: 16 SKSNDSEEGLEDAVEGADEALQKAIKSDSSSPQRVQRPHSS-PPRFVTVEELLETARGVT 74
Query: 70 K--LSNKIGMNCDYYMEEKVLPPSSLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELL 127
L+++I +N D+ ++ LP +SL+ +VKE VH AFWD L QLS PP + A++L+
Sbjct: 75 NMALAHEIVVNGDFQIKPVELPENSLKKRVKEIVHKAFWDCLSVQLSEDPPAYDHAIKLV 134
Query: 128 KEIKEILLSLLLPRQNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPV 187
EIKE LLS LLP RLR +I E LD+DL+KQEAE+GAL + L+++++ MM LCAP
Sbjct: 135 GEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLAEFIIGMMGTLCAPA 194
Query: 188 RDEAVQKLENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELL 247
RDE V+KL++I + V L R IF VL MK+DM N+ I S++PHL + S++YER KFQE+L
Sbjct: 195 RDEEVKKLKDIKEIVPLFREIFSVLDLMKVDMANFAISSIRPHLMQQSVEYERKKFQEIL 254
Query: 248 NKQPSLLNHTTKWLTQAAGDL-TMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLC 306
+QP+ L+ T+WL +A+ DL T ++ +G P LSP V
Sbjct: 255 ERQPNSLDFVTQWLEEASEDLMTQKYKHALPVGGMAAGSGDMPR--------LSPVAVQN 306
Query: 307 QGFLNLLLWDLENEEFPETLLMDRTRLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQ 366
+L LL WD FPET+LMD++R EL+ QL QLT++ +VLLV S + +
Sbjct: 307 YAYLKLLKWDHLQRPFPETVLMDQSRFHELQLQLEQLTILGAVLLVTFSMAAPGISSQAD 366
Query: 367 FVDKLKRITKSLLEDFH---SRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASLMG 423
F +KLK I K LL D H ++ + T+ E+V E+ L G ++D L G
Sbjct: 367 FAEKLKMIVKILLTDMHLPSFHLKDVLTTIGEKVCLEVSSCLSLCGSSPFTTDKETVLKG 426
Query: 424 QLQNIAKKENCVCSVIDQRIHLFLKCCLVLGVQRSLLDLPGGLTLIEAELAELGQKFVNL 483
Q+Q +A ++ + +++ RI FL+ L G Q+ L +PGGL+ ++ EL E+ KF L
Sbjct: 427 QIQAVASPDDPIRRIMESRILTFLETYLASGHQKPLPTVPGGLSPVQRELEEVAIKFARL 486
Query: 484 THHNQQVFGPYYTEILKTLI 503
++N+ VF PYY IL ++
Sbjct: 487 VNYNKMVFCPYYDAILSKIL 506
>gi|224493847 t-complex 11 (mouse) like 1 [Homo sapiens]
Length = 509
Score = 341 bits (875), Expect = 8e-94
Identities = 199/500 (39%), Positives = 294/500 (58%), Gaps = 17/500 (3%)
Query: 12 SKMPDVKESVPPKYPGDSEG--RSCKPETSGPPQEDKSGSEDPPPFLSVTGLTETVNEVS 69
SK D +E + G E ++ K ++S P + + S PP F++V L ET V+
Sbjct: 16 SKSNDSEEGLEDAVEGADEALQKAIKSDSSSPQRVQRPHSS-PPRFVTVEELLETARGVT 74
Query: 70 K--LSNKIGMNCDYYMEEKVLPPSSLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELL 127
L+++I +N D+ ++ LP +SL+ +VKE VH AFWD L QLS PP + A++L+
Sbjct: 75 NMALAHEIVVNGDFQIKPVELPENSLKKRVKEIVHKAFWDCLSVQLSEDPPAYDHAIKLV 134
Query: 128 KEIKEILLSLLLPRQNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPV 187
EIKE LLS LLP RLR +I E LD+DL+KQEAE+GAL + L+++++ MM LCAP
Sbjct: 135 GEIKETLLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLAEFIIGMMGTLCAPA 194
Query: 188 RDEAVQKLENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELL 247
RDE V+KL++I + V L R IF VL MK+DM N+ I S++PHL + S++YER KFQE+L
Sbjct: 195 RDEEVKKLKDIKEIVPLFREIFSVLDLMKVDMANFAISSIRPHLMQQSVEYERKKFQEIL 254
Query: 248 NKQPSLLNHTTKWLTQAAGDL-TMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLC 306
+QP+ L+ T+WL +A+ DL T ++ +G P LSP V
Sbjct: 255 ERQPNSLDFVTQWLEEASEDLMTQKYKHALPVGGMAAGSGDMPR--------LSPVAVQN 306
Query: 307 QGFLNLLLWDLENEEFPETLLMDRTRLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQ 366
+L LL WD FPET+LMD++R EL+ QL QLT++ +VLLV S + +
Sbjct: 307 YAYLKLLKWDHLQRPFPETVLMDQSRFHELQLQLEQLTILGAVLLVTFSMAAPGISSQAD 366
Query: 367 FVDKLKRITKSLLEDFH---SRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASLMG 423
F +KLK I K LL D H ++ + T+ E+V E+ L G ++D L G
Sbjct: 367 FAEKLKMIVKILLTDMHLPSFHLKDVLTTIGEKVCLEVSSCLSLCGSSPFTTDKETVLKG 426
Query: 424 QLQNIAKKENCVCSVIDQRIHLFLKCCLVLGVQRSLLDLPGGLTLIEAELAELGQKFVNL 483
Q+Q +A ++ + +++ RI FL+ L G Q+ L +PGGL+ ++ EL E+ KF L
Sbjct: 427 QIQAVASPDDPIRRIMESRILTFLETYLASGHQKPLPTVPGGLSPVQRELEEVAIKFARL 486
Query: 484 THHNQQVFGPYYTEILKTLI 503
++N+ VF PYY IL ++
Sbjct: 487 VNYNKMVFCPYYDAILSKIL 506
>gi|22749517 t-complex 11 (mouse) like 2 [Homo sapiens]
Length = 519
Score = 340 bits (871), Expect = 2e-93
Identities = 187/490 (38%), Positives = 303/490 (61%), Gaps = 25/490 (5%)
Query: 25 YPGDSEGRSCKPETSGPPQEDKSGSEDPPPFLSVTGLTETVNEVSKLSNKIGMNCDYYME 84
+ DS +S P ++ PP+ F V ++ ++ L+++I +N ++ ++
Sbjct: 40 FASDSSSKSSSPASTSPPRV--------VTFDEVMATARNLSNLT-LAHEIAVNENFQLK 90
Query: 85 EKVLPPSSLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILLSLLLPRQNR 144
++ LP SL G+VK VH AFWD L +L+A PP+F A++L +EI+EILLS L P NR
Sbjct: 91 QEALPEKSLAGRVKHIVHQAFWDVLDSELNADPPEFEHAIKLFEEIREILLSFLTPGGNR 150
Query: 145 LRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWL 204
LR +I E LD DL++Q+AEH A+ + L+ YV++ M LCAPVRD +++L+ + V +
Sbjct: 151 LRNQICEVLDTDLIRQQAEHSAVDIQGLANYVISTMGKLCAPVRDNDIRELKATGNIVEV 210
Query: 205 LRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQA 264
LR IF VL M+MDM N+TI SL+PHLQ ++YER KFQE+L + PS L+ TT+W+ ++
Sbjct: 211 LRQIFHVLDLMQMDMANFTIMSLRPHLQRQLVEYERTKFQEILEETPSALDQTTEWIKES 270
Query: 265 AGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEP-LSPTMVLCQGFLNLLLWDLENEEFP 323
+ S S+S+ G A N +P LSPT+VL +L LL WD + +E P
Sbjct: 271 VNEELFS------LSESALTPG-----AENTSKPSLSPTLVLNNSYLKLLQWDYQKKELP 319
Query: 324 ETLLMDRTRLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFH 383
ETL+ D RLQEL +L+QL ++A + L+ ++ G++ G P+ +L RI+ LLE +
Sbjct: 320 ETLMTDGARLQELTEKLNQLKIIACLSLITNNMVGAITGGLPELASRLTRISAVLLEGMN 379
Query: 384 SRP---EEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVID 440
+E + ++ Q E++++L GL L+++ A+L+GQ +I +++N + S+ID
Sbjct: 380 KETFNLKEVLNSIGIQTCVEVNKTLMERGLPTLNAEIQANLIGQFSSIEEEDNPIWSLID 439
Query: 441 QRIHLFLKCCLVL-GVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYYTEIL 499
+RI L+++ L L Q+ + +PGGL +I+ EL LG ++ N+ + N+QV+GP+Y IL
Sbjct: 440 KRIKLYMRRLLCLPSPQKCMPPMPGGLAVIQQELEALGSQYANIVNLNKQVYGPFYANIL 499
Query: 500 KTLISPAQAL 509
+ L+ +A+
Sbjct: 500 RKLLFNEEAM 509
>gi|58530840 desmoplakin isoform I [Homo sapiens]
Length = 2871
Score = 35.4 bits (80), Expect = 0.13
Identities = 81/372 (21%), Positives = 147/372 (39%), Gaps = 57/372 (15%)
Query: 62 TETVNEVSKLSNKIG-MNCDYYMEEKVLPPSSLEGKVKETVHNAFWDHLKE--------- 111
TET+N++ ++ + DY E+V S E VK+ F + LKE
Sbjct: 1522 TETINKLKVQEQELTRLRIDY---ERV----SQERTVKDQDITRFQNSLKELQLQKQKVE 1574
Query: 112 ----QLSATPPDFSCALELLKE--------IKEILLSLLLPRQNRLRIEIEEALDMDLLK 159
+L T + SC + L+E +KE + + Q + I + D L+
Sbjct: 1575 EELNRLKRTASEDSCKRKKLEEELEGMRRSLKEQAIKITNLTQQLEQASIVKKRSEDDLR 1634
Query: 160 QEAE--HGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQVLGRMKM 217
Q+ + G L+ ++ L ++ +R + +Q+ E++ ++
Sbjct: 1635 QQRDVLDGHLREKQRTQEELRRLSSEVEALRRQLLQEQESVKQ------------AHLRN 1682
Query: 218 DMVNYTIQSLQPHLQEHSIQYERAK-FQELLNKQPSLLNHTTKWLTQAAGDLTMSPPTCP 276
+ I+ L E I+ ER + E L K+ +L + L DL
Sbjct: 1683 EHFQKAIEDKSRSLNESKIEIERLQSLTENLTKEHLMLEEELRNLRLEYDDLRRGRSEAD 1742
Query: 277 DTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDLEN-----EEFPETLLMDRT 331
+++ + S + +NN T+ L QG +N L + EN E+F + L
Sbjct: 1743 SDKNATILELRSQLQISNNR-----TLEL-QGLINDLQRERENLRQEIEKFQKQALEASN 1796
Query: 332 RLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFHSRPEEAIL 391
R+QE K+Q Q+ LLV + D+L R KS LE +R ++ +
Sbjct: 1797 RIQESKNQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNR-AKSTLE-AETRVKQRLE 1854
Query: 392 TVSEQVSQEIHQ 403
+Q+ +++Q
Sbjct: 1855 CEKQQIQNDLNQ 1866
>gi|29789058 WW and C2 domain containing 1 isoform 3 [Homo sapiens]
Length = 1113
Score = 32.7 bits (73), Expect = 0.82
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 31/183 (16%)
Query: 263 QAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTM----VLCQGFLNLLLWDLE 318
QA L+ +P + S SS++ PSP P SP M + FLN L + E
Sbjct: 519 QALRSLSGTPKSMTSLSPRSSLSSPSP--------PCSPLMADPLLAGDAFLNSL--EFE 568
Query: 319 NEEFPETL--------LMDRTRLQELKSQLHQL-----TVMASVLLVASSFSG----SVL 361
+ E TL +R RL+E ++ QL T L VA + SV
Sbjct: 569 DPELSATLCELSLGNSAQERYRLEEPGTEGKQLGQAVNTAQGCGLKVACVSAAVSDESVA 628
Query: 362 FGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASL 421
S + ++R+ S F S EA+ Q++ + + K ++ + N ++L
Sbjct: 629 GDSGVYEASVQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSAL 688
Query: 422 MGQ 424
+ Q
Sbjct: 689 LQQ 691
>gi|242247257 WW and C2 domain containing 1 isoform 2 [Homo sapiens]
Length = 1118
Score = 32.7 bits (73), Expect = 0.82
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 31/183 (16%)
Query: 263 QAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTM----VLCQGFLNLLLWDLE 318
QA L+ +P + S SS++ PSP P SP M + FLN L + E
Sbjct: 519 QALRSLSGTPKSMTSLSPRSSLSSPSP--------PCSPLMADPLLAGDAFLNSL--EFE 568
Query: 319 NEEFPETL--------LMDRTRLQELKSQLHQL-----TVMASVLLVASSFSG----SVL 361
+ E TL +R RL+E ++ QL T L VA + SV
Sbjct: 569 DPELSATLCELSLGNSAQERYRLEEPGTEGKQLGQAVNTAQGCGLKVACVSAAVSDESVA 628
Query: 362 FGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASL 421
S + ++R+ S F S EA+ Q++ + + K ++ + N ++L
Sbjct: 629 GDSGVYEASVQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSAL 688
Query: 422 MGQ 424
+ Q
Sbjct: 689 LQQ 691
>gi|242247251 WW and C2 domain containing 1 isoform 1 [Homo sapiens]
Length = 1119
Score = 32.7 bits (73), Expect = 0.82
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 31/183 (16%)
Query: 263 QAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTM----VLCQGFLNLLLWDLE 318
QA L+ +P + S SS++ PSP P SP M + FLN L + E
Sbjct: 519 QALRSLSGTPKSMTSLSPRSSLSSPSP--------PCSPLMADPLLAGDAFLNSL--EFE 568
Query: 319 NEEFPETL--------LMDRTRLQELKSQLHQL-----TVMASVLLVASSFSG----SVL 361
+ E TL +R RL+E ++ QL T L VA + SV
Sbjct: 569 DPELSATLCELSLGNSAQERYRLEEPGTEGKQLGQAVNTAQGCGLKVACVSAAVSDESVA 628
Query: 362 FGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASL 421
S + ++R+ S F S EA+ Q++ + + K ++ + N ++L
Sbjct: 629 GDSGVYEASVQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSAL 688
Query: 422 MGQ 424
+ Q
Sbjct: 689 LQQ 691
>gi|196259796 hypothetical protein LOC375484 [Homo sapiens]
Length = 457
Score = 32.3 bits (72), Expect = 1.1
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 220 VNYTIQSLQPHLQEHSIQYERAKFQELL-------NKQPSLLNHTTKWLTQA-AGDLTMS 271
+ Y +Q+L+ Q+ +++ +R Q+ + +KQP + KWL +A D
Sbjct: 155 LRYVVQTLEDDFQQ-TLRRQRQHLQQSIANMVLSCDKQPHNVRDVIKWLVKAVTEDGLTQ 213
Query: 272 PPTCPDTSDSSSVAGPSPNEAANNPEPLSPT--MVLCQ 307
PP TS + + S + ++ P T +++CQ
Sbjct: 214 PPNGNQTSSGTGILKASSSHPSSQPNLTKNTNQLIVCQ 251
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 32.3 bits (72), Expect = 1.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 4 GGGGGDTISKMPDVKESVPPKYPGDSEGRSCKPETSGPPQEDKSGSEDPPP 54
GG GG+ + P PP+ G S G +C P +S D++G + P
Sbjct: 262 GGLGGEEDTGRPWGPSRGPPQAQGTSSGPNCAPGSSSSSSSDEAGDPNEAP 312
>gi|55741473 HECT, C2 and WW domain containing E3 ubiquitin protein
ligase 2 [Homo sapiens]
Length = 1572
Score = 32.3 bits (72), Expect = 1.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 262 TQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEP 298
T A P P+ ++SS AGP+P E PEP
Sbjct: 520 THEAASFEDKPENLPELAESSLPAGPAPEEGEGGPEP 556
>gi|63252870 osteosarcoma amplified 9 isoform 4 precursor [Homo
sapiens]
Length = 652
Score = 32.0 bits (71), Expect = 1.4
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 125 ELLKEIKEILLSLLLPR-QNRLRIEIEEALDMDLLKQEAE 163
+LL E ++ L +LLP ++RLR E E+ LD D LK+E+E
Sbjct: 431 QLLGEFEKELEGILLPSDRDRLRSETEKELDPDGLKKESE 470
>gi|63252868 osteosarcoma amplified 9 isoform 3 precursor [Homo
sapiens]
Length = 597
Score = 32.0 bits (71), Expect = 1.4
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 125 ELLKEIKEILLSLLLPR-QNRLRIEIEEALDMDLLKQEAE 163
+LL E ++ L +LLP ++RLR E E+ LD D LK+E+E
Sbjct: 431 QLLGEFEKELEGILLPSDRDRLRSETEKELDPDGLKKESE 470
>gi|42734393 forkhead box R1 [Homo sapiens]
Length = 292
Score = 32.0 bits (71), Expect = 1.4
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 207 GIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWL--TQA 264
G +V GR K + + T+ S QP +E A E L++ S + K + +
Sbjct: 66 GKLEVSGRRKREDLTSTLPSSQPPQKEEDASCSEAAGVESLSQSSSKRSPPRKRFAFSPS 125
Query: 265 AGDLTMSPPTCPDTSDSSSVAGPSPNEAA 293
+LT D DSSS+A PSP++ A
Sbjct: 126 TWELT-EEEEAEDQEDSSSMALPSPHKRA 153
>gi|28076869 serine (or cysteine) proteinase inhibitor, clade B
(ovalbumin), member 4 [Homo sapiens]
Length = 390
Score = 32.0 bits (71), Expect = 1.4
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 332 RLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLE--DFHSRPEEA 389
+ Q+L ++ ++ T + + F +++D +K+ ++ +E DF + PEE+
Sbjct: 84 QFQKLLTEFNKSTDAYELKIANKLFGEKTYQFLQEYLDAIKKFYQTSVESTDFANAPEES 143
Query: 390 ILTVSEQVSQEIHQSLKNM---GLV----ALSSDNTASLMGQLQNIAKKEN 433
++ V + ++ +KN+ G + L N GQ +N KKEN
Sbjct: 144 RKKINSWVESQTNEKIKNLFPDGTIGNDTTLVLVNAIYFKGQWENKFKKEN 194
>gi|190684710 EFR3 homolog B [Homo sapiens]
Length = 817
Score = 31.6 bits (70), Expect = 1.8
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 328 MDRTRLQELKSQLHQLTVMASVLLVASSFSGSVLFGS--PQFVDKLKRITKSLLEDFHSR 385
+D R E +++L Q+ ++ S+L V++ F + + + F+D+L ++ +L+ED R
Sbjct: 414 VDTGRTGENRNRLTQIMLLKSLLQVSTGFQCNNMMSALPSNFLDRL--LSTALMEDAEIR 471
Query: 386 PEEAILTVSEQVSQEI--HQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVIDQRI 443
L V E + I H + ++ SD + L ++ ++++ Q++
Sbjct: 472 -----LFVLEILISFIDRHGNRHKFSTISTLSDISV-LKLKVDKCSRQDTVFMKKHSQQL 525
Query: 444 --HLFLKCCLVLGVQRSLLDLPGGLTLIEAELA 474
H++L C VQ+ L G L LI ELA
Sbjct: 526 YRHIYLSCKEETNVQKHYEALYGLLALISIELA 558
>gi|13540614 coiled-coil domain containing 130 [Homo sapiens]
Length = 396
Score = 31.6 bits (70), Expect = 1.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 263 QAAGDLTMSPPTCP-DTSDSSSVAGPSPNEAANNPEPLSP 301
+AA D MSP CP +T+++ + P E + +PLSP
Sbjct: 324 EAAQDRPMSPGDCPPETTETPKCSSPRGQEGSRQDKPLSP 363
>gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]
Length = 858
Score = 31.2 bits (69), Expect = 2.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 248 NKQPSLLNHTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNP 296
N QPS + T + + A DL+ T + + +SS+AG +P N P
Sbjct: 511 NIQPSPAHETGQGIVHALTDLSSPGMTSGNGNSASSIAGTAPQNGENKP 559
>gi|19743886 regulatory factor X4 isoform a [Homo sapiens]
Length = 641
Score = 30.8 bits (68), Expect = 3.1
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 207 GIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAG 266
G F ++ M D V Y ++SL H QE + + RA E + LT+AA
Sbjct: 357 GSFHLIHLMFDDYVLYLLESL--HCQERANELMRAMKGEGSTAEV----REEIILTEAAA 410
Query: 267 DLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDL 317
P+ ++SV P P+ +NP P T + G + W L
Sbjct: 411 PTPSPVPSFSPAKSATSVEVPPPSSPVSNPSP-EYTGLSTTGAMQSYTWSL 460
>gi|47132527 regulatory factor X4 isoform c [Homo sapiens]
Length = 735
Score = 30.8 bits (68), Expect = 3.1
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 207 GIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAG 266
G F ++ M D V Y ++SL H QE + + RA E + LT+AA
Sbjct: 451 GSFHLIHLMFDDYVLYLLESL--HCQERANELMRAMKGEGSTAEV----REEIILTEAAA 504
Query: 267 DLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDL 317
P+ ++SV P P+ +NP P T + G + W L
Sbjct: 505 PTPSPVPSFSPAKSATSVEVPPPSSPVSNPSP-EYTGLSTTGAMQSYTWSL 554
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 30.8 bits (68), Expect = 3.1
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 1/103 (0%)
Query: 201 PVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKW 260
P++ + G+F + ++ + SL Q++ + A Q+ +Q
Sbjct: 3334 PMYGMEGLFPYSPALSQALMGLSPGSLLQQYQQYQQSLQEA-IQQQQQRQLQQQQQQKVQ 3392
Query: 261 LTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTM 303
Q T PP P + P P E N P +SP +
Sbjct: 3393 QQQPKASQTPVPPGAPSPDKDPAKESPKPEEQKNTPREVSPLL 3435
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 30.8 bits (68), Expect = 3.1
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 265 AGDLTMSP-PTCPDTSDSSSVAGPSP--NEAANNPEPLSPTMV 304
AG T SP P P TSDS S +G + EA + P+P SP ++
Sbjct: 766 AGSRTCSPAPIPPHTSDSCSKSGAASLGEEARDTPQPSSPLVL 808
>gi|167234419 thyroid hormone receptor associated protein 3 [Homo
sapiens]
Length = 955
Score = 30.8 bits (68), Expect = 3.1
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 13 KMPDVKESVPPKYPGDSEGRSCKPET-SGPPQEDKSGSEDPPPFLSVTGLTETVNEVSKL 71
K K+S P + GD++G K +T SG +D SE P+ T T + + S +
Sbjct: 180 KKSSSKDSRPSQAAGDNQGDEAKEQTFSGGTSQDTKASESSKPWPDATYGTGSASRASAV 239
Query: 72 S 72
S
Sbjct: 240 S 240
>gi|148833496 interferon regulatory factor 5 isoform b [Homo
sapiens]
Length = 498
Score = 30.4 bits (67), Expect = 4.1
Identities = 31/90 (34%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 239 ERAKFQELLNKQPSL-LNHTTKWLTQAAGDLTMSPPTC-PDTSDSSSVAGPSPNEAANNP 296
E + +EL PSL L KW T+ PPT P T V GP A +P
Sbjct: 143 EEEEEEELQRMLPSLSLTEDVKW-PPTLQPPTLRPPTLQPPTLQPPVVLGPP----APDP 197
Query: 297 EPLSPTMVLCQGFLNLLLWDLENEEFPETL 326
PL+P GF LL LE P +L
Sbjct: 198 SPLAPPPGNPAGFRELLSEVLEPGPLPASL 227
>gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens]
Length = 498
Score = 30.4 bits (67), Expect = 4.1
Identities = 31/90 (34%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 239 ERAKFQELLNKQPSL-LNHTTKWLTQAAGDLTMSPPTC-PDTSDSSSVAGPSPNEAANNP 296
E + +EL PSL L KW T+ PPT P T V GP A +P
Sbjct: 143 EEEEEEELQRMLPSLSLTEDVKW-PPTLQPPTLRPPTLQPPTLQPPVVLGPP----APDP 197
Query: 297 EPLSPTMVLCQGFLNLLLWDLENEEFPETL 326
PL+P GF LL LE P +L
Sbjct: 198 SPLAPPPGNPAGFRELLSEVLEPGPLPASL 227
>gi|15011898 regulatory factor X4 isoform b [Homo sapiens]
Length = 563
Score = 30.4 bits (67), Expect = 4.1
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 207 GIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAG 266
G F ++ M D V Y ++SL H QE + + RA E + LT+AA
Sbjct: 460 GSFHLIHLMFDDYVLYLLESL--HCQERANELMRAMKGEGSTAEV----REEIILTEAAA 513
Query: 267 DLTMSPPTCPDTSDSSSVAGPSPNEAANNPEP 298
P+ ++SV P P+ +NP P
Sbjct: 514 PTPSPVPSFSPAKSATSVEVPPPSSPVSNPSP 545
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 30.4 bits (67), Expect = 4.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 248 NKQPSLLNHTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSP 301
+ +P+ H LT GD +PP P ++ SS PSP+ ++++P P P
Sbjct: 166 SSRPTCARH----LTLGTGDGGPAPPPAPSSASSS----PSPSPSSSSPSPPPP 211
>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
Length = 553
Score = 30.4 bits (67), Expect = 4.1
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 210 QVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLT 269
+ +G++K VNY + +L+E ++E + + N S L TK + +
Sbjct: 377 KTVGQVKNFFVNYRRRF---NLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKS 433
Query: 270 MSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQ 307
T + GPSP ++ P P +P L Q
Sbjct: 434 TDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLNQ 471
>gi|8922733 REST corepressor 3 isoform d [Homo sapiens]
Length = 495
Score = 30.4 bits (67), Expect = 4.1
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 210 QVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLT 269
+ +G++K VNY + +L+E ++E + + N S L TK + +
Sbjct: 319 KTVGQVKNFFVNYRRRF---NLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKS 375
Query: 270 MSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQ 307
T + GPSP ++ P P +P L Q
Sbjct: 376 TDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLNQ 413
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,872,980
Number of Sequences: 37866
Number of extensions: 989705
Number of successful extensions: 4505
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 4451
Number of HSP's gapped (non-prelim): 83
length of query: 516
length of database: 18,247,518
effective HSP length: 107
effective length of query: 409
effective length of database: 14,195,856
effective search space: 5806105104
effective search space used: 5806105104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.