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Search of human proteins with 145580604
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|145580604 transmembrane protein 65 [Homo sapiens]
(240 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|145580604 transmembrane protein 65 [Homo sapiens] 483 e-137
gi|122939153 nicotinamide nucleotide transhydrogenase [Homo sapi... 37 0.020
gi|122939155 nicotinamide nucleotide transhydrogenase [Homo sapi... 37 0.020
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 34 0.099
gi|7706501 WW domain binding protein 11 [Homo sapiens] 34 0.099
gi|214010185 amyloid beta (A4) precursor-like protein 2 isoform ... 33 0.29
gi|214010183 amyloid beta (A4) precursor-like protein 2 isoform ... 33 0.29
gi|214010181 amyloid beta (A4) precursor-like protein 2 isoform ... 33 0.29
gi|4502147 amyloid beta (A4) precursor-like protein 2 isoform 1 ... 33 0.29
gi|45433499 zinc finger, DHHC-type containing 18 [Homo sapiens] 32 0.49
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens] 32 0.64
gi|13375682 G protein-coupled receptor 172A [Homo sapiens] 31 0.84
gi|13540490 BTB and CNC homology 1, basic leucine zipper transcr... 31 1.1
gi|157364934 fibrosin [Homo sapiens] 31 1.1
gi|239757152 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo ... 30 1.4
gi|239746556 PREDICTED: hypothetical protein XP_002343778 [Homo ... 30 1.4
gi|239755879 PREDICTED: hypothetical protein XP_002344729 [Homo ... 30 1.9
gi|239750409 PREDICTED: hypothetical protein XP_002347416 [Homo ... 30 1.9
gi|239744709 PREDICTED: hypothetical protein XP_002343201 [Homo ... 30 1.9
gi|130502140 NEZHA isoform 2 [Homo sapiens] 30 1.9
gi|122937255 NEZHA isoform 1 [Homo sapiens] 30 1.9
gi|23957690 component of oligomeric golgi complex 7 [Homo sapiens] 30 1.9
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 30 2.4
gi|116235476 WD repeat domain 73 [Homo sapiens] 30 2.4
gi|22035600 mitogen-activated protein kinase kinase kinase kinas... 29 3.2
gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens] 29 3.2
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 29 4.2
gi|239748594 PREDICTED: hypothetical protein XP_002346735 [Homo ... 29 4.2
gi|73476377 LBXCOR1 homolog [Homo sapiens] 29 4.2
>gi|145580604 transmembrane protein 65 [Homo sapiens]
Length = 240
Score = 483 bits (1244), Expect = e-137
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MSRLLPLLRSRTARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGPRRLGTHPKK 60
MSRLLPLLRSRTARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGPRRLGTHPKK
Sbjct: 1 MSRLLPLLRSRTARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGPRRLGTHPKK 60
Query: 61 EPMEALNTAQGARDFIYSLHSTERSCLLKELHRFESIAIAQEKLEAPPPTPGQLRYVFIH 120
EPMEALNTAQGARDFIYSLHSTERSCLLKELHRFESIAIAQEKLEAPPPTPGQLRYVFIH
Sbjct: 61 EPMEALNTAQGARDFIYSLHSTERSCLLKELHRFESIAIAQEKLEAPPPTPGQLRYVFIH 120
Query: 121 NAIPFIGFGFLDNAIMIVAGTHIEMSIGIILGISTMAAAALGNLVSDLAGLGLAGYVEAL 180
NAIPFIGFGFLDNAIMIVAGTHIEMSIGIILGISTMAAAALGNLVSDLAGLGLAGYVEAL
Sbjct: 121 NAIPFIGFGFLDNAIMIVAGTHIEMSIGIILGISTMAAAALGNLVSDLAGLGLAGYVEAL 180
Query: 181 ASRLGLSIPDLTPKQVDMWQTRLSTHLGKAVGVTIGCILGMFPLIFFGGGEEDEKLETKS 240
ASRLGLSIPDLTPKQVDMWQTRLSTHLGKAVGVTIGCILGMFPLIFFGGGEEDEKLETKS
Sbjct: 181 ASRLGLSIPDLTPKQVDMWQTRLSTHLGKAVGVTIGCILGMFPLIFFGGGEEDEKLETKS 240
>gi|122939153 nicotinamide nucleotide transhydrogenase [Homo
sapiens]
Length = 1086
Score = 36.6 bits (83), Expect = 0.020
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 23/117 (19%)
Query: 108 PPTPGQLRYVFIHNAIPFIGFGFLDNAIMIVAGTHIEM---------SIGIILGISTMAA 158
P P + Y+++ A F+G G+L + +G +IE +G + G+ST
Sbjct: 588 PTDPPEYNYLYLLPAGTFVG-GYL---AALYSGYNIEQIMYLGSGLCCVGALAGLSTQGT 643
Query: 159 AALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQVDMWQTRLSTHLGKAVGVTI 215
A LGN LG+ G LA+ LG+ L P + Q + LG +G+TI
Sbjct: 644 ARLGN------ALGMIGVAGGLAATLGV----LKPGPELLAQMSGAMALGGTIGLTI 690
>gi|122939155 nicotinamide nucleotide transhydrogenase [Homo
sapiens]
Length = 1086
Score = 36.6 bits (83), Expect = 0.020
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 23/117 (19%)
Query: 108 PPTPGQLRYVFIHNAIPFIGFGFLDNAIMIVAGTHIEM---------SIGIILGISTMAA 158
P P + Y+++ A F+G G+L + +G +IE +G + G+ST
Sbjct: 588 PTDPPEYNYLYLLPAGTFVG-GYL---AALYSGYNIEQIMYLGSGLCCVGALAGLSTQGT 643
Query: 159 AALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQVDMWQTRLSTHLGKAVGVTI 215
A LGN LG+ G LA+ LG+ L P + Q + LG +G+TI
Sbjct: 644 ARLGN------ALGMIGVAGGLAATLGV----LKPGPELLAQMSGAMALGGTIGLTI 690
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 34.3 bits (77), Expect = 0.099
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 14 RSLRPGPAAAAA-PRPPSWCCCGRGLLALAPPGGLPGGPRRLGTHP 58
++L GPA+AA P PP RG APPG PGGP LG P
Sbjct: 259 QTLLNGPASAAVLPPPPPHALGSRGPPTPAPPGA-PGGPACLGGTP 303
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 34.3 bits (77), Expect = 0.099
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 5 LPLLRSRTARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGPRRLGTHPKKEP 62
+P LR R L PGP P PP PP GLP GP G P+ P
Sbjct: 447 MPGLRGPLPRLLPPGPPPGRPPGPPP-----------GPPPGLPPGPPPRGPPPRLPP 493
>gi|214010185 amyloid beta (A4) precursor-like protein 2 isoform 4
[Homo sapiens]
Length = 522
Score = 32.7 bits (73), Expect = 0.29
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 155 TMAAAALGNLVSDLA------GLGLAGYVEALASRLGLSIPDLTPKQVDMWQTRLSTHLG 208
T AAAA G L+ L L LAGY+EALA+ G P Q+ M+ +L+ H+
Sbjct: 6 TAAAAATGRLLLLLLVGLTAPALALAGYIEALAANAGTGFAVAEP-QIAMFCGKLNMHVN 64
Query: 209 KAVG 212
G
Sbjct: 65 IQTG 68
>gi|214010183 amyloid beta (A4) precursor-like protein 2 isoform 3
[Homo sapiens]
Length = 695
Score = 32.7 bits (73), Expect = 0.29
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 155 TMAAAALGNLVSDLA------GLGLAGYVEALASRLGLSIPDLTPKQVDMWQTRLSTHLG 208
T AAAA G L+ L L LAGY+EALA+ G P Q+ M+ +L+ H+
Sbjct: 6 TAAAAATGRLLLLLLVGLTAPALALAGYIEALAANAGTGFAVAEP-QIAMFCGKLNMHVN 64
Query: 209 KAVG 212
G
Sbjct: 65 IQTG 68
>gi|214010181 amyloid beta (A4) precursor-like protein 2 isoform 2
[Homo sapiens]
Length = 751
Score = 32.7 bits (73), Expect = 0.29
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 155 TMAAAALGNLVSDLA------GLGLAGYVEALASRLGLSIPDLTPKQVDMWQTRLSTHLG 208
T AAAA G L+ L L LAGY+EALA+ G P Q+ M+ +L+ H+
Sbjct: 6 TAAAAATGRLLLLLLVGLTAPALALAGYIEALAANAGTGFAVAEP-QIAMFCGKLNMHVN 64
Query: 209 KAVG 212
G
Sbjct: 65 IQTG 68
>gi|4502147 amyloid beta (A4) precursor-like protein 2 isoform 1
[Homo sapiens]
Length = 763
Score = 32.7 bits (73), Expect = 0.29
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 155 TMAAAALGNLVSDLA------GLGLAGYVEALASRLGLSIPDLTPKQVDMWQTRLSTHLG 208
T AAAA G L+ L L LAGY+EALA+ G P Q+ M+ +L+ H+
Sbjct: 6 TAAAAATGRLLLLLLVGLTAPALALAGYIEALAANAGTGFAVAEP-QIAMFCGKLNMHVN 64
Query: 209 KAVG 212
G
Sbjct: 65 IQTG 68
>gi|45433499 zinc finger, DHHC-type containing 18 [Homo sapiens]
Length = 388
Score = 32.0 bits (71), Expect = 0.49
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 18 PGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGPRR 53
PGPA AAP PP W G G + + G L PRR
Sbjct: 35 PGPAPPAAPAPPRWSSSGSG--SGSGSGSLGRRPRR 68
>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
Length = 981
Score = 31.6 bits (70), Expect = 0.64
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 5 LPLLRSRTARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGPRRLGTHPKKEPME 64
L LL A +L AAA PRPP+ C L+ LA P P G + P
Sbjct: 682 LRLLELTWALALALAAVAAARPRPPTEHACWAKLMRLACPA--PSGKSEVPERPNNCYAG 739
Query: 65 ALNTAQGARDFIYSL 79
N G+ D SL
Sbjct: 740 PSNVGAGSLDISKSL 754
>gi|13375682 G protein-coupled receptor 172A [Homo sapiens]
Length = 445
Score = 31.2 bits (69), Expect = 0.84
Identities = 42/160 (26%), Positives = 63/160 (39%), Gaps = 33/160 (20%)
Query: 38 LLALAPPGGLPGGPRRLG--------------THPKKEP-MEALNTAQGARDFIYSLHST 82
LL L PP +P G G + P +EP +A T G Y L S
Sbjct: 215 LLLLPPPPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSA 274
Query: 83 ERSCLLKELHRFESIAIAQEKLEAPPPTPGQLRYVFIHNAIPFIGFGFLDNAIMIVAGTH 142
+CLL L ++ T G L V + +P +G L + +V G+
Sbjct: 275 RSACLLGLLAATNAL------------TNGVLPAVQSFSCLP---YGRLAYHLAVVLGSA 319
Query: 143 IE-MSIGIILGISTMAAAALGNLVSDLAGLGLAGYVEALA 181
++ + +G+ + A LG L L G+ GY+ ALA
Sbjct: 320 ANPLACFLAMGVLCRSLAGLGGL--SLLGVFCGGYLMALA 357
>gi|13540490 BTB and CNC homology 1, basic leucine zipper
transcription factor 2 [Homo sapiens]
Length = 841
Score = 30.8 bits (68), Expect = 1.1
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 1 MSRLLPLLRSR---TARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGP 51
+ R P+LR TA S+ P P A S C G + PG P GP
Sbjct: 726 LHRYCPVLRPMDLPTASSINPAPLGAEQNIAASQCAVGENVPCCLEPGAAPPGP 779
>gi|157364934 fibrosin [Homo sapiens]
Length = 460
Score = 30.8 bits (68), Expect = 1.1
Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 6 PLLRSRTARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGPRRLGTHPK 59
PLL SR A P P AAAP P LL+ PPG L G P L P+
Sbjct: 403 PLLYSRLA----PPPPPAAAPGTPH-------LLSKTPPGALLGAPPPLVPAPR 445
>gi|239757152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 30.4 bits (67), Expect = 1.4
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 13/70 (18%)
Query: 15 SLRPGPAAAAAPRPP------SWCCC-------GRGLLALAPPGGLPGGPRRLGTHPKKE 61
+L P A R P WC C GRG L LA PG G R LG P +
Sbjct: 107 ALCPALLTGAVERTPVHLKAGKWCVCWPGVVRWGRGCLELAGPGPPCGRLRGLGPSPPRA 166
Query: 62 PMEALNTAQG 71
++ A G
Sbjct: 167 ARPSVPAAAG 176
>gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo
sapiens]
Length = 235
Score = 30.4 bits (67), Expect = 1.4
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 13/70 (18%)
Query: 15 SLRPGPAAAAAPRPP------SWCCC-------GRGLLALAPPGGLPGGPRRLGTHPKKE 61
+L P A R P WC C GRG L LA PG G R LG P +
Sbjct: 107 ALCPALLTGAVERTPVHLKAGKWCVCWPGVVRWGRGCLELAGPGPPCGRLRGLGPSPPRA 166
Query: 62 PMEALNTAQG 71
++ A G
Sbjct: 167 ARPSVPAAAG 176
>gi|239746556 PREDICTED: hypothetical protein XP_002343778 [Homo
sapiens]
Length = 169
Score = 30.4 bits (67), Expect = 1.4
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 11 RTARSLRPGPAAA--AAPRPPSWCCCGRGLLALAPPGGLPGGPRRLGT-HPKKEPMEALN 67
RT SLR PA A A R P W G + P L PR G +P
Sbjct: 74 RTGPSLRSSPAGAEIAPTRTPRWLASAAGSPSFCPRLSLHTSPRAEGAGSGLSQPQRRAL 133
Query: 68 TAQGARD 74
TAQG +
Sbjct: 134 TAQGGAE 140
>gi|239755879 PREDICTED: hypothetical protein XP_002344729 [Homo
sapiens]
Length = 90
Score = 30.0 bits (66), Expect = 1.9
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 6 PLLRSRTARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGPRRLGTHPKKEPMEA 65
PL R+R +R P AA AP C G + PG P GP TH + P EA
Sbjct: 39 PLSRTRPSRIRSPELAARPAP-----LCAGADRRS---PGRPPAGPSPGNTHQPERPWEA 90
>gi|239750409 PREDICTED: hypothetical protein XP_002347416 [Homo
sapiens]
Length = 90
Score = 30.0 bits (66), Expect = 1.9
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 6 PLLRSRTARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGPRRLGTHPKKEPMEA 65
PL R+R +R P AA AP C G + PG P GP TH + P EA
Sbjct: 39 PLSRTRPSRIRSPELAARPAP-----LCAGADRRS---PGRPPAGPSPGNTHQPERPWEA 90
>gi|239744709 PREDICTED: hypothetical protein XP_002343201 [Homo
sapiens]
Length = 90
Score = 30.0 bits (66), Expect = 1.9
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 6 PLLRSRTARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGPRRLGTHPKKEPMEA 65
PL R+R +R P AA AP C G + PG P GP TH + P EA
Sbjct: 39 PLSRTRPSRIRSPELAARPAP-----LCAGADRRS---PGRPPAGPSPGNTHQPERPWEA 90
>gi|130502140 NEZHA isoform 2 [Homo sapiens]
Length = 1249
Score = 30.0 bits (66), Expect = 1.9
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 1 MSRLLPLLRSRTARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPG 49
M L +LR R A S PG A RP S CC LA +P GL G
Sbjct: 991 MDDLDKVLRPRAAGSGGPGRGGRRATRPRSG-CCDDSALARSPARGLLG 1038
>gi|122937255 NEZHA isoform 1 [Homo sapiens]
Length = 1276
Score = 30.0 bits (66), Expect = 1.9
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 1 MSRLLPLLRSRTARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPG 49
M L +LR R A S PG A RP S CC LA +P GL G
Sbjct: 1018 MDDLDKVLRPRAAGSGGPGRGGRRATRPRSG-CCDDSALARSPARGLLG 1065
>gi|23957690 component of oligomeric golgi complex 7 [Homo sapiens]
Length = 770
Score = 30.0 bits (66), Expect = 1.9
Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 14/160 (8%)
Query: 37 GLLALAPPGGLPGGPRRLGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLKELHRFES 96
G L + P L G R G P++E L F L LL LH
Sbjct: 288 GALMPSLPSCLSNGVERAG--PEQELTRLLEFYDATAHFAKGLEMA----LLPHLHEHNL 341
Query: 97 IAIAQEKLEA--PPPTPGQLRYVFIHNAIPFIGFGF--LDNAIMIVAGTHIEMSIGIILG 152
+ + E ++A P P QL+Y + + I L++ +I + S+ + G
Sbjct: 342 VKVT-ELVDAVYDPYKPYQLKYGDMEESNLLIQMSAVPLEHGEVIDCVQELSHSVNKLFG 400
Query: 153 ISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLT 192
+ A+AA+ V GLG G + AL S + D T
Sbjct: 401 L---ASAAVDRCVRFTNGLGTCGLLSALKSLFAKYVSDFT 437
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 29.6 bits (65), Expect = 2.4
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 11 RTARSLRPGPAAAAAPR--PPSWCCCGRGLLALAPPGGLPGG-PRRLGTHP 58
R R RPGPAA + P +W G G A GG GG PRR G P
Sbjct: 39 RPPRRQRPGPAAPSPPARGAAAWGRSGGG--PAAQSGGDGGGLPRRAGAEP 87
>gi|116235476 WD repeat domain 73 [Homo sapiens]
Length = 378
Score = 29.6 bits (65), Expect = 2.4
Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 33 CCGRGLLAL-------APPGGLPGGPRRLGTHPKKEPMEALNTAQGARDFIYSLHSTERS 85
CC G L L AP GP G+ ++ E + QG I SL S R
Sbjct: 194 CCASGRLGLVDTRQKWAPLENRSPGP---GSGGERWCAEVGSWGQGPGPSIASLGSDGRL 250
Query: 86 CLLKELHRFESIAIAQEKLEAPPPTPGQLRYVF---IHNAIPFIGF 128
CLL ++ Q + P P P LR + + N + GF
Sbjct: 251 CLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGF 296
>gi|22035600 mitogen-activated protein kinase kinase kinase kinase 2
[Homo sapiens]
Length = 820
Score = 29.3 bits (64), Expect = 3.2
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 49 GGPRRLGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLKELHRFESIAIAQEKLEAPP 108
G PRR T P EP E T G + SL + + L + S + QE L++P
Sbjct: 338 GAPRRKETDPLNEPWEEEWTLLGKEELSGSLLQSVQEALEERSLTIRSASEFQE-LDSPD 396
Query: 109 PTPGQLRYVFIHNAIPFIG 127
T G ++ PF+G
Sbjct: 397 DTMGTIK------RAPFLG 409
>gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]
Length = 239
Score = 29.3 bits (64), Expect = 3.2
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 15 SLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGPRRLGT---HPKKEPMEALNTA 69
+L P +AAP PP R AL+PPG PG R G+ P EP +L A
Sbjct: 5 ALSPVLMLSAAPEPPP-----RPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAA 57
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 28.9 bits (63), Expect = 4.2
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 9 RSRTARSLRPGPAAAAAPRP---PSWCCCGRGL-LALAPPGGLPGGPRRLGTHPKKEPM 63
R +R L G + A P P PS G G+ +A A PG LPGG G + P+
Sbjct: 50 RPSCSRPLCAGSSCLATPEPARAPSIAEPGPGIPVAAAKPGVLPGGGGCTGARTENPPL 108
>gi|239748594 PREDICTED: hypothetical protein XP_002346735 [Homo
sapiens]
Length = 262
Score = 28.9 bits (63), Expect = 4.2
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 17 RPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGG--PRRLGT 56
R GPA +A PRP CGR A G GG P ++GT
Sbjct: 5 RQGPARSANPRPQFPGVCGREHAATLRAPGRGGGASPAQIGT 46
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 28.9 bits (63), Expect = 4.2
Identities = 19/51 (37%), Positives = 21/51 (41%)
Query: 12 TARSLRPGPAAAAAPRPPSWCCCGRGLLALAPPGGLPGGPRRLGTHPKKEP 62
+A S GP PPS G A +P GG P RRLG P P
Sbjct: 637 SAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRP 687
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.140 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,727,712
Number of Sequences: 37866
Number of extensions: 550065
Number of successful extensions: 2559
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 2517
Number of HSP's gapped (non-prelim): 104
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.