Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 14550405
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14550405 postreplication repair protein hRAD18p [Homo
sapiens]
(495 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14550405 postreplication repair protein hRAD18p [Homo sapiens] 983 0.0
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 53 6e-07
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 52 2e-06
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 52 2e-06
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 51 3e-06
gi|157266328 BRCA1 associated RING domain 1 [Homo sapiens] 50 5e-06
gi|109240538 polycomb group ring finger 1 [Homo sapiens] 50 5e-06
gi|19923717 deltex 3-like [Homo sapiens] 49 1e-05
gi|52487176 tripartite motif-containing 37 protein [Homo sapiens] 47 3e-05
gi|15147333 tripartite motif-containing 37 protein [Homo sapiens] 47 3e-05
gi|31542779 tripartite motif family-like 1 [Homo sapiens] 47 4e-05
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens] 47 5e-05
gi|6005964 ring finger protein 110 [Homo sapiens] 46 7e-05
gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens] 45 2e-04
gi|21314654 ring finger protein 139 [Homo sapiens] 45 2e-04
gi|88999601 tripartite motif-containing 69 isoform a [Homo sapiens] 45 2e-04
gi|33946313 ninein isoform 4 [Homo sapiens] 44 3e-04
gi|33946321 ninein isoform 5 [Homo sapiens] 44 3e-04
gi|148536871 ninein isoform 1 [Homo sapiens] 44 3e-04
gi|148536869 ninein isoform 2 [Homo sapiens] 44 3e-04
gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens] 44 3e-04
gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens] 44 3e-04
gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens] 44 3e-04
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 44 3e-04
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 44 3e-04
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 44 3e-04
gi|7705415 hook homolog 1 [Homo sapiens] 44 3e-04
gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens] 44 3e-04
gi|94536782 tripartite motif-containing 35 isoform 2 [Homo sapiens] 44 3e-04
gi|223890259 midline 2 isoform 2 [Homo sapiens] 44 4e-04
>gi|14550405 postreplication repair protein hRAD18p [Homo sapiens]
Length = 495
Score = 983 bits (2542), Expect = 0.0
Identities = 495/495 (100%), Positives = 495/495 (100%)
Query: 1 MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQC 60
MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQC
Sbjct: 1 MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQC 60
Query: 61 PTCCVTVTEPDLKNNRILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLAVKVYTPV 120
PTCCVTVTEPDLKNNRILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLAVKVYTPV
Sbjct: 61 PTCCVTVTEPDLKNNRILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLAVKVYTPV 120
Query: 121 ASRQSLKQGSRLMDNFLIREMSGSTSELLIKENKSKFSPQKEASPAAKTKETRSVEEIAP 180
ASRQSLKQGSRLMDNFLIREMSGSTSELLIKENKSKFSPQKEASPAAKTKETRSVEEIAP
Sbjct: 121 ASRQSLKQGSRLMDNFLIREMSGSTSELLIKENKSKFSPQKEASPAAKTKETRSVEEIAP 180
Query: 181 DPSEAKRPEPPSTSTLKQVTKVDCPVCGVNIPESHINKHLDSCLSREEKKESLRSSVHKR 240
DPSEAKRPEPPSTSTLKQVTKVDCPVCGVNIPESHINKHLDSCLSREEKKESLRSSVHKR
Sbjct: 181 DPSEAKRPEPPSTSTLKQVTKVDCPVCGVNIPESHINKHLDSCLSREEKKESLRSSVHKR 240
Query: 241 KPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQCDALHPKSAAEI 300
KPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQCDALHPKSAAEI
Sbjct: 241 KPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQCDALHPKSAAEI 300
Query: 301 VQEIENIEKTRMRLEASKLNESVMVFTKDQTEKEIDEIHSKYRKKHKSEFQLLVDQARKG 360
VQEIENIEKTRMRLEASKLNESVMVFTKDQTEKEIDEIHSKYRKKHKSEFQLLVDQARKG
Sbjct: 301 VQEIENIEKTRMRLEASKLNESVMVFTKDQTEKEIDEIHSKYRKKHKSEFQLLVDQARKG 360
Query: 361 YKKIAGMSQKTVTITKEDESTEKLSSVCMGQEDNMTSVTNHFSQSKLDSPEELEPDREED 420
YKKIAGMSQKTVTITKEDESTEKLSSVCMGQEDNMTSVTNHFSQSKLDSPEELEPDREED
Sbjct: 361 YKKIAGMSQKTVTITKEDESTEKLSSVCMGQEDNMTSVTNHFSQSKLDSPEELEPDREED 420
Query: 421 SSSCIDIQEVLSSSESDSCNSSSSDIIRDLLEEEEAWEASHKNDLQDTEISPRQNRRTRA 480
SSSCIDIQEVLSSSESDSCNSSSSDIIRDLLEEEEAWEASHKNDLQDTEISPRQNRRTRA
Sbjct: 421 SSSCIDIQEVLSSSESDSCNSSSSDIIRDLLEEEEAWEASHKNDLQDTEISPRQNRRTRA 480
Query: 481 AESAEIEPRNKRNRN 495
AESAEIEPRNKRNRN
Sbjct: 481 AESAEIEPRNKRNRN 495
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 53.1 bits (126), Expect = 6e-07
Identities = 76/369 (20%), Positives = 159/369 (43%), Gaps = 53/369 (14%)
Query: 135 NFLIREMSGSTSELLIK-ENKSKFSPQKEASPAAKTKETRSVEEIAPDPSEAKRPEPPST 193
N + E S+L I+ + K++ EA+ A+ + ++ + A + + K+ E
Sbjct: 627 NSQLNESKEKVSQLDIQIKAKTELLLSAEAAKTAQRADLQNHLDTAQNALQDKQQELNKI 686
Query: 194 ST-LKQVT-KVDCPVCGVNIPESHINKHLDSCLSREEKKESLRSSVHKRKPLPKTVYNLL 251
+T L QVT K+ + ESH+ ++ + LS E+K E L +
Sbjct: 687 TTQLDQVTAKLQDKQEHCSQLESHLKEYKEKYLSLEQKTEELEGQI-------------- 732
Query: 252 SDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQCDALHPKSAAEIVQEIENIEKTR 311
KKL+ L ++ +K+Q ++ Q+ N + + + ++ E E + TR
Sbjct: 733 ------KKLEADSLEVKASKEQALQDLQQ-QRQLNTDLELRATELSKQLEMEKEIVSSTR 785
Query: 312 MRLE-ASKLNESV-MVFTKDQTEKEIDEIHSKYRKKHKSEFQLLVDQARKGYKKIAGMSQ 369
+ L+ S+ ES+ TK + EK+I K +F+ L + + ++++ Q
Sbjct: 786 LDLQKKSEALESIKQKLTKQEEEKQI----------LKQDFETLSQETKIQHEELNNRIQ 835
Query: 370 KTVT-ITKEDESTEKLSSVCMGQEDNMTSVTNHFSQSKLDSPEELEPDREEDSSSCIDIQ 428
TVT + K E L + +D ++ V++ SK E E + ++ ++ +D++
Sbjct: 836 TTVTELQKVKMEKEALMTELSTVKDKLSKVSDSLKNSK----SEFEKENQKGKAAILDLE 891
Query: 429 EVLSSSESDSCNSSSSDI-----IRDLLEEEEAWEASHK-----NDLQDTEISPRQNRRT 478
+ + + + ++ LE+E+ EASH+ N +Q+ I + +
Sbjct: 892 KTCKELKHQLQVQMENTLKEQKELKKSLEKEK--EASHQLKLELNSMQEQLIQAQNTLKQ 949
Query: 479 RAAESAEIE 487
E +++
Sbjct: 950 NEKEEQQLQ 958
Score = 33.1 bits (74), Expect = 0.60
Identities = 63/279 (22%), Positives = 113/279 (40%), Gaps = 55/279 (19%)
Query: 121 ASRQSLKQG--SRLMDNFLIREMSGSTSELL------IKENKSKFSPQKEASPAAKTKET 172
A QSL+Q +NF I++M + I + KSK+ ++ AA+ K T
Sbjct: 135 AELQSLEQQLEEAQTENFNIKQMKDLFEQKAAQLATEIADIKSKYDEERSLREAAEQKVT 194
Query: 173 RSVEEIAPDPSE--------AKRPEPPSTSTL-KQVTKVDCPVCGVNIP-ESHINKHLDS 222
R EE+ + + +RP + L K++ +V + + + E K D
Sbjct: 195 RLTEELNKEATVIQDLKTELLQRPGIEDVAVLKKELVQVQTLMDNMTLERERESEKLKDE 254
Query: 223 C-------LSREEKKESLRSS-----------VHKRKPLPKTVYNL------LSDRDLKK 258
C S E LRS V + + L +V L L++ LKK
Sbjct: 255 CKKLQSQYASSEATISQLRSELAKGPQEVAVYVQELQKLKSSVNELTQKNQTLTENLLKK 314
Query: 259 KLKEHGLSIQGNKQQLIKRH-QEFVHMYNAQCDALHPKSAAEIVQEIENIEKTRMRLEAS 317
+ L + N++ + K++ Q +H + C L + +A R+ +E S
Sbjct: 315 EQDYTKLEEKHNEESVSKKNIQATLHQKDLDCQQLQSRLSA------SETSLHRIHVELS 368
Query: 318 KLNESVMVFTKDQTEKEIDEIHSKYRKKHKSEFQLLVDQ 356
+ E+ + ++E+ E+ +KY+ K+EF+ L Q
Sbjct: 369 EKGEAT-----QKLKEELSEVETKYQHL-KAEFKQLQQQ 401
Score = 31.2 bits (69), Expect = 2.3
Identities = 51/304 (16%), Positives = 139/304 (45%), Gaps = 51/304 (16%)
Query: 123 RQSLKQGSRLMDNFLI-REMSGSTSELLIKENKSKFSPQKEASPAAKTKETRSVEEIAPD 181
++ L Q LMDN + RE + K+ +S+++ + +++ + +E+A
Sbjct: 227 KKELVQVQTLMDNMTLERERESEKLKDECKKLQSQYASSEATISQLRSELAKGPQEVAVY 286
Query: 182 PSEAKRPEPPSTSTLKQVTKVDCPVCGVNIPESHINKHLDSCLSREE------KKESLRS 235
E ++ + S++ ++T+ + + E+ + K D E+ K+++++
Sbjct: 287 VQELQKLK----SSVNELTQKN-----QTLTENLLKKEQDYTKLEEKHNEESVSKKNIQA 337
Query: 236 SVHKRKPLPKTVYNLLSDRD-----LKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQCD 290
++H++ + + + LS + + +L E G + Q K++L + ++ H+
Sbjct: 338 TLHQKDLDCQQLQSRLSASETSLHRIHVELSEKGEATQKLKEELSEVETKYQHL------ 391
Query: 291 ALHPKSAAEIVQEIENIEKTRMRL--EASKLNESVMVFTKDQTEKEIDEIHSKYRKKHKS 348
++ Q+ E E+ ++L E ++L+ ++ +TE+++ E H + +++ +
Sbjct: 392 ---KAEFKQLQQQREEKEQHGLQLQSEINQLHSKLL-----ETERQLGEAHGRLKEQRQL 443
Query: 349 EFQLLVDQARKGYKKIAGMSQKTVTITKEDESTEKLSSVCMGQEDNMTSVTNHFSQSKLD 408
+ L+D+ +++A + K + E++ EK++ N T + + ++K
Sbjct: 444 SSEKLMDKE----QQVADLQLKLSRL--EEQLKEKVT--------NSTELQHQLDKTKQQ 489
Query: 409 SPEE 412
E+
Sbjct: 490 HQEQ 493
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo
sapiens]
Length = 1758
Score = 51.6 bits (122), Expect = 2e-06
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 20/181 (11%)
Query: 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFL--SYKTQCPTCCVTVTEPD-LKNN 75
I D L C IC + A++IP C ++YC CIR L S + CPTC PD L N
Sbjct: 253 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 312
Query: 76 RILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLAVKVYTPVASRQSLKQGSRLMDN 135
+ L + V + + + + P P + L + P+ +Q LM
Sbjct: 313 KFLRQAVNNFKNETGYTKRLRKQLPPPPPPIPPPRPLIQRNLQPLMRSPISRQQDPLMIP 372
Query: 136 FLIREMSGSTSELLIKENKSKFSPQKEASPAAKTKETRSVEEIAPDPSEAKRPEPPSTST 195
+ S + N+S +P ++ +PS A P P T+T
Sbjct: 373 VTSSSTHPAPSISSLTSNQSSLAP-----------------PVSGNPSSAPAPVPDITAT 415
Query: 196 L 196
+
Sbjct: 416 V 416
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
sapiens]
Length = 1792
Score = 51.6 bits (122), Expect = 2e-06
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 20/181 (11%)
Query: 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFL--SYKTQCPTCCVTVTEPD-LKNN 75
I D L C IC + A++IP C ++YC CIR L S + CPTC PD L N
Sbjct: 253 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 312
Query: 76 RILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLAVKVYTPVASRQSLKQGSRLMDN 135
+ L + V + + + + P P + L + P+ +Q LM
Sbjct: 313 KFLRQAVNNFKNETGYTKRLRKQLPPPPPPIPPPRPLIQRNLQPLMRSPISRQQDPLMIP 372
Query: 136 FLIREMSGSTSELLIKENKSKFSPQKEASPAAKTKETRSVEEIAPDPSEAKRPEPPSTST 195
+ S + N+S +P ++ +PS A P P T+T
Sbjct: 373 VTSSSTHPAPSISSLTSNQSSLAP-----------------PVSGNPSSAPAPVPDITAT 415
Query: 196 L 196
+
Sbjct: 416 V 416
>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
sapiens]
Length = 1940
Score = 50.8 bits (120), Expect = 3e-06
Identities = 48/214 (22%), Positives = 92/214 (42%), Gaps = 29/214 (13%)
Query: 255 DLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQCDALHPKSAAEIVQEIENIEKTRMRL 314
+L KK + L ++ + ++ +H+ V A H S AE+ ++I+N+++ + +L
Sbjct: 1163 ELNKKREAEFLKLRRDLEEATLQHEAMV----AALRKKHADSVAELGEQIDNLQRVKQKL 1218
Query: 315 EASKLNESVMVFTKDQTEKEIDEIHSKYRKKHKSEFQL------LVDQARKGYKKIAGMS 368
E K + + EID++ S KS+ L L DQ + K +
Sbjct: 1219 EKE----------KSEFKLEIDDLSSSMESVSKSKANLEKICRTLEDQLSEARGKNEEIQ 1268
Query: 369 QKTVTITKEDESTEKLSSVCMGQEDNMTSVTNHFSQSK---LDSPEELEPDREEDSSSCI 425
+ +T + + + Q + S+ + S+SK EEL+ EE++ +
Sbjct: 1269 RSLSELTTQKSRLQTEAGELSRQLEEKESIVSQLSRSKQAFTQQTEELKRQLEEENKAKN 1328
Query: 426 DIQEVLSSSESDSCNSSSSDIIRDLLEEEEAWEA 459
+ L SS D D++R+ EEE+ +A
Sbjct: 1329 ALAHALQSSRHD------CDLLREQYEEEQEGKA 1356
>gi|157266328 BRCA1 associated RING domain 1 [Homo sapiens]
Length = 777
Score = 50.1 bits (118), Expect = 5e-06
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 1 MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQC 60
M+ W A + ++ LLRC C + + C H +CS C+ + T C
Sbjct: 26 MEPDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGC 83
Query: 61 PTCCVTVTEPDLKNNRILDELVKSLNFARNHL 92
P C DLK NR LD +++ + RN L
Sbjct: 84 PVCYTPAWIQDLKINRQLDSMIQLCSKLRNLL 115
>gi|109240538 polycomb group ring finger 1 [Homo sapiens]
Length = 259
Score = 50.1 bits (118), Expect = 5e-06
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV--TEP--D 71
+K +++ + C +C YF A I +C H +C CI K+L CP C + + T+P +
Sbjct: 38 IKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLN 97
Query: 72 LKNNRILDELVKSL 85
LK +R++ ++V L
Sbjct: 98 LKLDRVMQDIVYKL 111
>gi|19923717 deltex 3-like [Homo sapiens]
Length = 740
Score = 48.9 bits (115), Expect = 1e-05
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 25 CGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
C IC + + ++P+C H +C+ CI K +SYK CPTC
Sbjct: 561 CVICMDTISNKKVLPKCKHEFCAPCINKAMSYKPICPTC 599
>gi|52487176 tripartite motif-containing 37 protein [Homo sapiens]
Length = 964
Score = 47.4 bits (111), Expect = 3e-05
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLKN 74
+++I ++ RC IC E A + P CS C CIR++L+ + QCP C + +L N
Sbjct: 6 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVN 65
Query: 75 NRILDELVKSLN 86
R +E+ + L+
Sbjct: 66 CRWAEEVTQQLD 77
>gi|15147333 tripartite motif-containing 37 protein [Homo sapiens]
Length = 964
Score = 47.4 bits (111), Expect = 3e-05
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLKN 74
+++I ++ RC IC E A + P CS C CIR++L+ + QCP C + +L N
Sbjct: 6 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVN 65
Query: 75 NRILDELVKSLN 86
R +E+ + L+
Sbjct: 66 CRWAEEVTQQLD 77
>gi|31542779 tripartite motif family-like 1 [Homo sapiens]
Length = 468
Score = 47.0 bits (110), Expect = 4e-05
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLC-IRKFLSYKT--QCPTCCVTVTEPD 71
+M+ + + L C IC +YF+ + + +C H++C +C +R + + T CP C T+ P
Sbjct: 6 LMENLREELTCFICLDYFS-SPVTTECGHSFCLVCLLRSWEEHNTPLSCPECWRTLEGPH 64
Query: 72 LKNNRILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLA 113
++N L L R+ +LQ E + +++K L+
Sbjct: 65 FQSNERLGRLASIARQLRSQVLQSEDEQGSYGRMPTTAKALS 106
>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
Length = 485
Score = 46.6 bits (109), Expect = 5e-05
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
+++ L+C IC EYF I + C+H++CS CI +++ K +CP C
Sbjct: 397 LENELQCIICSEYF-IEAVTLNCAHSFCSYCINEWMKRKIECPIC 440
>gi|6005964 ring finger protein 110 [Homo sapiens]
Length = 344
Score = 46.2 bits (108), Expect = 7e-05
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV--TEP--DLKNNRIL 78
L C +C YF A I +C H++C CI ++L CP C V V T P +++++ L
Sbjct: 16 LMCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCDVQVHKTRPLLSIRSDKTL 75
Query: 79 DELVKSL 85
++V L
Sbjct: 76 QDIVYKL 82
>gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens]
Length = 326
Score = 45.1 bits (105), Expect = 2e-04
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV--TEP--DLKNNRIL 78
L C +C YF A I +C H++C CI ++L CP C V V T P ++++++ L
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 79 DELVKSL 85
++V L
Sbjct: 76 QDIVYKL 82
>gi|21314654 ring finger protein 139 [Homo sapiens]
Length = 664
Score = 44.7 bits (104), Expect = 2e-04
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV-TEPDLKN 74
++ I+D+ C IC+ F + I C+H + +LC+RK+L + CP C V E D+K+
Sbjct: 540 LQEINDV--CAICYHEFTTSARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDDIKD 597
Query: 75 N 75
N
Sbjct: 598 N 598
>gi|88999601 tripartite motif-containing 69 isoform a [Homo sapiens]
Length = 500
Score = 44.7 bits (104), Expect = 2e-04
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 11 PGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKF---LSYKTQCPTCCVTV 67
P V++ I L C +C ++F +++ C HN+C CI+ F + +T CP C +
Sbjct: 27 PSKVVIQDITMELHCPLCNDWFRDPLML-SCGHNFCEACIQDFWRLQAKETFCPECKMLC 85
Query: 68 TEPDLKNNRILDELVKSL 85
+ N +LD+LV+ +
Sbjct: 86 QYNNCTFNPVLDKLVEKI 103
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 44.3 bits (103), Expect = 3e-04
Identities = 50/271 (18%), Positives = 116/271 (42%), Gaps = 28/271 (10%)
Query: 219 HLDSCLSREEKKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKR- 277
H ++ EE+K+ L+ + + K + L + +LK +L + S + ++ L
Sbjct: 696 HHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSA 755
Query: 278 -HQEFVHMYNAQCDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVFTKDQTEKEID 336
+E V + + H + +V++ +EK +R E + ++ + +++ E E +
Sbjct: 756 WTEEKVRGLTQELEQFHQEQLTSLVEK-HTLEKEELRKELLEKHQRELQEGREKMETECN 814
Query: 337 EIHSKYRKKHKSEFQLLVDQARKGYKKIAGMSQKTVTITKEDESTEK---------LSSV 387
S+ + +S+ Q + ++ + + G ++ + +E + EK L+
Sbjct: 815 RRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEFEKDELTQE 874
Query: 388 CMGQEDNMTSVTNHFSQSKLDSPEELE----PDREEDSSSCIDIQEVLSSSE-----SDS 438
C ++ + + L +E E +E +S ++ Q++L E S++
Sbjct: 875 CAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSET 934
Query: 439 CNSSSSDIIRDLLEEEEAWEASHKNDLQDTE 469
S SD I +L ++SHK +L++ E
Sbjct: 935 QQSLLSDQILEL-------KSSHKRELRERE 958
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 44.3 bits (103), Expect = 3e-04
Identities = 50/271 (18%), Positives = 116/271 (42%), Gaps = 28/271 (10%)
Query: 219 HLDSCLSREEKKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKR- 277
H ++ EE+K+ L+ + + K + L + +LK +L + S + ++ L
Sbjct: 690 HHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSA 749
Query: 278 -HQEFVHMYNAQCDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVFTKDQTEKEID 336
+E V + + H + +V++ +EK +R E + ++ + +++ E E +
Sbjct: 750 WTEEKVRGLTQELEQFHQEQLTSLVEK-HTLEKEELRKELLEKHQRELQEGREKMETECN 808
Query: 337 EIHSKYRKKHKSEFQLLVDQARKGYKKIAGMSQKTVTITKEDESTEK---------LSSV 387
S+ + +S+ Q + ++ + + G ++ + +E + EK L+
Sbjct: 809 RRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEFEKDELTQE 868
Query: 388 CMGQEDNMTSVTNHFSQSKLDSPEELE----PDREEDSSSCIDIQEVLSSSE-----SDS 438
C ++ + + L +E E +E +S ++ Q++L E S++
Sbjct: 869 CAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSET 928
Query: 439 CNSSSSDIIRDLLEEEEAWEASHKNDLQDTE 469
S SD I +L ++SHK +L++ E
Sbjct: 929 QQSLLSDQILEL-------KSSHKRELRERE 952
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 44.3 bits (103), Expect = 3e-04
Identities = 50/271 (18%), Positives = 116/271 (42%), Gaps = 28/271 (10%)
Query: 219 HLDSCLSREEKKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKR- 277
H ++ EE+K+ L+ + + K + L + +LK +L + S + ++ L
Sbjct: 690 HHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSA 749
Query: 278 -HQEFVHMYNAQCDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVFTKDQTEKEID 336
+E V + + H + +V++ +EK +R E + ++ + +++ E E +
Sbjct: 750 WTEEKVRGLTQELEQFHQEQLTSLVEK-HTLEKEELRKELLEKHQRELQEGREKMETECN 808
Query: 337 EIHSKYRKKHKSEFQLLVDQARKGYKKIAGMSQKTVTITKEDESTEK---------LSSV 387
S+ + +S+ Q + ++ + + G ++ + +E + EK L+
Sbjct: 809 RRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEFEKDELTQE 868
Query: 388 CMGQEDNMTSVTNHFSQSKLDSPEELE----PDREEDSSSCIDIQEVLSSSE-----SDS 438
C ++ + + L +E E +E +S ++ Q++L E S++
Sbjct: 869 CAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSET 928
Query: 439 CNSSSSDIIRDLLEEEEAWEASHKNDLQDTE 469
S SD I +L ++SHK +L++ E
Sbjct: 929 QQSLLSDQILEL-------KSSHKRELRERE 952
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 44.3 bits (103), Expect = 3e-04
Identities = 50/271 (18%), Positives = 116/271 (42%), Gaps = 28/271 (10%)
Query: 219 HLDSCLSREEKKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKR- 277
H ++ EE+K+ L+ + + K + L + +LK +L + S + ++ L
Sbjct: 690 HHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSA 749
Query: 278 -HQEFVHMYNAQCDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVFTKDQTEKEID 336
+E V + + H + +V++ +EK +R E + ++ + +++ E E +
Sbjct: 750 WTEEKVRGLTQELEQFHQEQLTSLVEK-HTLEKEELRKELLEKHQRELQEGREKMETECN 808
Query: 337 EIHSKYRKKHKSEFQLLVDQARKGYKKIAGMSQKTVTITKEDESTEK---------LSSV 387
S+ + +S+ Q + ++ + + G ++ + +E + EK L+
Sbjct: 809 RRTSQIEAQFQSDCQKVTERCESALQSLEGRYRQELKDLQEQQREEKSQWEFEKDELTQE 868
Query: 388 CMGQEDNMTSVTNHFSQSKLDSPEELE----PDREEDSSSCIDIQEVLSSSE-----SDS 438
C ++ + + L +E E +E +S ++ Q++L E S++
Sbjct: 869 CAEAQELLKETLKREKTTSLVLTQEREMLEKTYKEHLNSMVVERQQLLQDLEDLRNVSET 928
Query: 439 CNSSSSDIIRDLLEEEEAWEASHKNDLQDTE 469
S SD I +L ++SHK +L++ E
Sbjct: 929 QQSLLSDQILEL-------KSSHKRELRERE 952
>gi|237681119 breast cancer 1, early onset isoform 2 [Homo
sapiens]
Length = 1884
Score = 43.9 bits (102), Expect = 3e-04
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK---TQCPTCCVTVTEPD 71
V+ + +L C IC E + +C H +C C+ K L+ K +QCP C +T+
Sbjct: 14 VINAMQKILECPICLELIK-EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72
Query: 72 LKNNRILDELVKSL 85
L+ + +LV+ L
Sbjct: 73 LQESTRFSQLVEEL 86
>gi|237681125 breast cancer 1, early onset isoform 5 [Homo
sapiens]
Length = 699
Score = 43.9 bits (102), Expect = 3e-04
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK---TQCPTCCVTVTEPD 71
V+ + +L C IC E + +C H +C C+ K L+ K +QCP C +T+
Sbjct: 14 VINAMQKILECPICLELIK-EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72
Query: 72 LKNNRILDELVKSL 85
L+ + +LV+ L
Sbjct: 73 LQESTRFSQLVEEL 86
>gi|237681123 breast cancer 1, early onset isoform 4 [Homo
sapiens]
Length = 759
Score = 43.9 bits (102), Expect = 3e-04
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK---TQCPTCCVTVTEPD 71
V+ + +L C IC E + +C H +C C+ K L+ K +QCP C +T+
Sbjct: 14 VINAMQKILECPICLELIK-EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72
Query: 72 LKNNRILDELVKSL 85
L+ + +LV+ L
Sbjct: 73 LQESTRFSQLVEEL 86
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 43.9 bits (102), Expect = 3e-04
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK---TQCPTCCVTVTEPD 71
V+ + +L C IC E + +C H +C C+ K L+ K +QCP C +T+
Sbjct: 14 VINAMQKILECPICLELIK-EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72
Query: 72 LKNNRILDELVKSL 85
L+ + +LV+ L
Sbjct: 73 LQESTRFSQLVEEL 86
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo
sapiens]
Length = 488
Score = 43.9 bits (102), Expect = 3e-04
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 14 AVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKF---LSYKTQCPTCCVTVTEP 70
A ++ + C +C EY +II +C HN+C CI ++ L CP C T
Sbjct: 18 AALENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVCRKTSRYR 76
Query: 71 DLKNNRILDELVK 83
L+ NR L +V+
Sbjct: 77 SLRPNRQLGSMVE 89
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo
sapiens]
Length = 518
Score = 43.9 bits (102), Expect = 3e-04
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 14 AVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKF---LSYKTQCPTCCVTVTEP 70
A ++ + C +C EY +II +C HN+C CI ++ L CP C T
Sbjct: 18 AALENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVCRKTSRYR 76
Query: 71 DLKNNRILDELVK 83
L+ NR L +V+
Sbjct: 77 SLRPNRQLGSMVE 89
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 43.9 bits (102), Expect = 3e-04
Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 28/228 (12%)
Query: 224 LSREEKKES-----LRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRH 278
LS E K+ ++ K + L K L+ RD K+ E Q + L
Sbjct: 385 LSSESKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRCSQVQQDHL---- 440
Query: 279 QEFVHMYNAQCDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVFTKDQTEKEIDEI 338
Q DA KS + EI +E + + N+ + + + + I+E+
Sbjct: 441 --------NQTDASATKSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEEL 492
Query: 339 HSKYRKKHKSEFQLLVDQARKGYKKIAGMSQKTVTITK---------EDESTEKLSSVCM 389
+ +KH+ +L +Q R ++I + Q+ + K E ES+ KL
Sbjct: 493 QEQLEQKHRKMNELETEQ-RLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLE 551
Query: 390 GQEDNMTSVTNHFSQSKLDSPEELEPDREEDSSSCIDIQEVLSSSESD 437
+ +T V Q K + E+L+PD ++ +++ L + D
Sbjct: 552 AHMEKLTEVHEEL-QKKQELIEDLQPDINQNVQKINELEAALQKKDED 598
>gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens]
Length = 350
Score = 43.9 bits (102), Expect = 3e-04
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 25 CGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV--TEP--DLKNNRILDE 80
C IC Y A I +C H +C CI + Y +CP C + V T+P +++ +R L +
Sbjct: 134 CSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQD 193
Query: 81 LVKSL 85
+V L
Sbjct: 194 IVYKL 198
>gi|94536782 tripartite motif-containing 35 isoform 2 [Homo
sapiens]
Length = 493
Score = 43.9 bits (102), Expect = 3e-04
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQ--CPTCCVTVTEPDLKN 74
++ + L C +C++ F A+ + +C HN+C C+ + + CP C + DL+
Sbjct: 13 RSFKEELLCAVCYDPFRDAVTL-RCGHNFCRGCVSRCWEVQVSPTCPVCKDRASPADLRT 71
Query: 75 NRILDELVKSL 85
N L+ LV+ L
Sbjct: 72 NHTLNNLVEKL 82
>gi|223890259 midline 2 isoform 2 [Homo sapiens]
Length = 705
Score = 43.5 bits (101), Expect = 4e-04
Identities = 68/336 (20%), Positives = 130/336 (38%), Gaps = 78/336 (23%)
Query: 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKT------------QCPTC 63
M+T++ L C IC E F +++P C+H+ C C + L QCPTC
Sbjct: 21 METLESELTCPICLELFEDPLLLP-CAHSLCFSCAHRILVSSCSSGESIEPITAFQCPTC 79
Query: 64 CVTVTEPDLKNNRILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLAVKVYTPVASR 123
++ N+R LD L +++ +N + +F + + S +S S++ + Y P +
Sbjct: 80 RYVIS----LNHRGLDGLKRNVTL-QNIIDRF--QKASVSGPNSPSESRRERTYRPTTAM 132
Query: 124 QSLKQGSRLMDNFLIREMSGSTSELLIKENKSKFSPQKEASPAAKTKETRSVEEIAPDPS 183
S + + + P ++A T E +
Sbjct: 133 SSERIACQFCEQ----------------------DPPRDAVKTCITCEVSYCDRCLRATH 170
Query: 184 EAKRP-------EPPSTSTLKQVTKVDCPVCGVNIPESHINKHLDS-CLSREEKKESLRS 235
K+P EP + L+ +T +D H N+ ++ C+S ++ +L
Sbjct: 171 PNKKPFTSHRLVEPVPDTHLRGITCLD-----------HENEKVNMYCVSDDQLICALCK 219
Query: 236 SVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQCD----- 290
V + + + + S D +KLK+ +++ N L+KR+ E +
Sbjct: 220 LVGRHRD-----HQVASLNDRFEKLKQ---TLEMNLTNLVKRNSELENQMAKLIQICQQV 271
Query: 291 ----ALHPKSAAEIVQEIENIEKTRMRLEASKLNES 322
A+H E E+ I + R ++ A K+ E+
Sbjct: 272 EVNTAMHEAKLMEECDELVEIIQQRKQMIAVKIKET 307
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.125 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,842,422
Number of Sequences: 37866
Number of extensions: 865707
Number of successful extensions: 5012
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 461
Number of HSP's that attempted gapping in prelim test: 4350
Number of HSP's gapped (non-prelim): 1050
length of query: 495
length of database: 18,247,518
effective HSP length: 106
effective length of query: 389
effective length of database: 14,233,722
effective search space: 5536917858
effective search space used: 5536917858
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.