Guide to the Human Genome
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Search of human proteins with 145309317

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|145309317 tetratricopeptide repeat domain 30A [Homo sapiens]
         (665 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|145309317 tetratricopeptide repeat domain 30A [Homo sapiens]      1339   0.0  
gi|125988411 tetratricopeptide repeat domain 30B [Homo sapiens]      1278   0.0  
gi|225735593 RNA polymerase II associated protein 3 isoform 2 [H...    43   0.001
gi|225735591 RNA polymerase II associated protein 3 isoform 1 [H...    43   0.001
gi|225735595 RNA polymerase II associated protein 3 isoform 3 [H...    39   0.015
gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...    38   0.026
gi|194306559 kinesin light chain 1 isoform 3 [Homo sapiens]            37   0.059
gi|110735431 kinesin light chain 1 isoform 2 [Homo sapiens]            37   0.059
gi|33620730 kinesin light chain 1 isoform 1 [Homo sapiens]             37   0.059
gi|194353959 phosphoinositide-3-kinase, class 2 gamma polypeptid...    33   0.85 
gi|21361356 translocase of outer mitochondrial membrane 34 [Homo...    33   0.85 
gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [...    33   0.85 
gi|91825557 kinesin light chain 3 [Homo sapiens]                       33   1.1  
gi|4557291 autoimmune regulator isoform 1 [Homo sapiens]               32   1.4  
gi|157502177 tetratricopeptide repeat domain 21A isoform 2 [Homo...    32   2.5  
gi|31377634 guanylate binding protein 4 [Homo sapiens]                 31   3.2  
gi|157502179 tetratricopeptide repeat domain 21A isoform 1 [Homo...    31   3.2  
gi|21450645 tetratricopeptide repeat domain 16 [Homo sapiens]          31   3.2  
gi|56119110 family with sequence similarity 13, member A1 isofor...    31   4.2  
gi|62865869 family with sequence similarity 13, member A1 isofor...    31   4.2  
gi|22749211 transmembrane and tetratricopeptide repeat containin...    31   4.2  
gi|41871960 kinesin-like 8 isoform b [Homo sapiens]                    31   4.2  
gi|41871955 kinesin-like 8 isoform a [Homo sapiens]                    31   4.2  
gi|41871946 kinesin-like 8 isoform a [Homo sapiens]                    31   4.2  
gi|25952122 Bardet-Biedl syndrome 4 [Homo sapiens]                     30   5.5  
gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo...    30   5.5  
gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]         30   7.2  
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       30   7.2  
gi|148806872 lupus brain antigen 1 [Homo sapiens]                      30   7.2  
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is...    30   7.2  

>gi|145309317 tetratricopeptide repeat domain 30A [Homo sapiens]
          Length = 665

 Score = 1339 bits (3466), Expect = 0.0
 Identities = 665/665 (100%), Positives = 665/665 (100%)

Query: 1   MAGLSGAQIPDGEFTALVYRLIRDARYAEAVQLLGRELQRSPRSRAGLSLLGYCYYRLQE 60
           MAGLSGAQIPDGEFTALVYRLIRDARYAEAVQLLGRELQRSPRSRAGLSLLGYCYYRLQE
Sbjct: 1   MAGLSGAQIPDGEFTALVYRLIRDARYAEAVQLLGRELQRSPRSRAGLSLLGYCYYRLQE 60

Query: 61  FALAAECYEQLGQLHPELEQYRLYQAQALYKACLYPEATRVAFLLLDNPAYHSRVLRLQA 120
           FALAAECYEQLGQLHPELEQYRLYQAQALYKACLYPEATRVAFLLLDNPAYHSRVLRLQA
Sbjct: 61  FALAAECYEQLGQLHPELEQYRLYQAQALYKACLYPEATRVAFLLLDNPAYHSRVLRLQA 120

Query: 121 AIKYSEGDLPGSRSLVEQLLSGEGGEESGGDNETDGQVNLGCLLYKEGQYEAACSKFSAT 180
           AIKYSEGDLPGSRSLVEQLLSGEGGEESGGDNETDGQVNLGCLLYKEGQYEAACSKFSAT
Sbjct: 121 AIKYSEGDLPGSRSLVEQLLSGEGGEESGGDNETDGQVNLGCLLYKEGQYEAACSKFSAT 180

Query: 181 LQASGYQPDLSYNLALAYYSSRQYASALKHIAEIIERGIRQHPELGVGMTTEGFDVRSVG 240
           LQASGYQPDLSYNLALAYYSSRQYASALKHIAEIIERGIRQHPELGVGMTTEGFDVRSVG
Sbjct: 181 LQASGYQPDLSYNLALAYYSSRQYASALKHIAEIIERGIRQHPELGVGMTTEGFDVRSVG 240

Query: 241 NTLVLHQTALVEAFNLKAAIEYQLRNYEVAQETLTDMPPRAEEELDPVTLHNQALMNMDA 300
           NTLVLHQTALVEAFNLKAAIEYQLRNYEVAQETLTDMPPRAEEELDPVTLHNQALMNMDA
Sbjct: 241 NTLVLHQTALVEAFNLKAAIEYQLRNYEVAQETLTDMPPRAEEELDPVTLHNQALMNMDA 300

Query: 301 RPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLTYKFLTPYLYD 360
           RPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLTYKFLTPYLYD
Sbjct: 301 RPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLTYKFLTPYLYD 360

Query: 361 FLDALITCQTAPEEAFIKLDGLAGMLTEQLRRLTKQVQEARHNRDDEAIKKAVNEYDETM 420
           FLDALITCQTAPEEAFIKLDGLAGMLTEQLRRLTKQVQEARHNRDDEAIKKAVNEYDETM
Sbjct: 361 FLDALITCQTAPEEAFIKLDGLAGMLTEQLRRLTKQVQEARHNRDDEAIKKAVNEYDETM 420

Query: 421 EKYIPVLMAQAKIYWNLENYPMVEKVFRKSVEFCNDHDVWKLNVAHVLFMQENKYKEAIG 480
           EKYIPVLMAQAKIYWNLENYPMVEKVFRKSVEFCNDHDVWKLNVAHVLFMQENKYKEAIG
Sbjct: 421 EKYIPVLMAQAKIYWNLENYPMVEKVFRKSVEFCNDHDVWKLNVAHVLFMQENKYKEAIG 480

Query: 481 FYEPIVKKHYDNILNVSAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYDDPNRKM 540
           FYEPIVKKHYDNILNVSAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYDDPNRKM
Sbjct: 481 FYEPIVKKHYDNILNVSAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYDDPNRKM 540

Query: 541 YHLCIVNLVIGTLYCAKGNYEFGISRVIKSLEPYNKKLGTDTWYYAKRCFLSLLENMSKH 600
           YHLCIVNLVIGTLYCAKGNYEFGISRVIKSLEPYNKKLGTDTWYYAKRCFLSLLENMSKH
Sbjct: 541 YHLCIVNLVIGTLYCAKGNYEFGISRVIKSLEPYNKKLGTDTWYYAKRCFLSLLENMSKH 600

Query: 601 MIVIHDSVIQECVQFLGHCELYGTNIPAVIEQPLEEERMHVGKNTVTDESRQLKALIYEI 660
           MIVIHDSVIQECVQFLGHCELYGTNIPAVIEQPLEEERMHVGKNTVTDESRQLKALIYEI
Sbjct: 601 MIVIHDSVIQECVQFLGHCELYGTNIPAVIEQPLEEERMHVGKNTVTDESRQLKALIYEI 660

Query: 661 IGWNK 665
           IGWNK
Sbjct: 661 IGWNK 665


>gi|125988411 tetratricopeptide repeat domain 30B [Homo sapiens]
          Length = 665

 Score = 1278 bits (3306), Expect = 0.0
 Identities = 634/664 (95%), Positives = 647/664 (97%)

Query: 1   MAGLSGAQIPDGEFTALVYRLIRDARYAEAVQLLGRELQRSPRSRAGLSLLGYCYYRLQE 60
           MAGLSGAQIPDGEFTA+VYRLIR+ARYAEAVQLLG ELQRSPRSRAGLSLLGYCYYRLQE
Sbjct: 1   MAGLSGAQIPDGEFTAVVYRLIRNARYAEAVQLLGGELQRSPRSRAGLSLLGYCYYRLQE 60

Query: 61  FALAAECYEQLGQLHPELEQYRLYQAQALYKACLYPEATRVAFLLLDNPAYHSRVLRLQA 120
           FALAAECYEQLGQLHPELEQYRLYQAQALYKACLY EATRVAFLLLDNPAYHSRVLRLQA
Sbjct: 61  FALAAECYEQLGQLHPELEQYRLYQAQALYKACLYAEATRVAFLLLDNPAYHSRVLRLQA 120

Query: 121 AIKYSEGDLPGSRSLVEQLLSGEGGEESGGDNETDGQVNLGCLLYKEGQYEAACSKFSAT 180
           AIKYSEGDLPGSRSLVEQL S EGGEESGG+NETDGQ+NLGCLLYKEGQYEAACSKF A 
Sbjct: 121 AIKYSEGDLPGSRSLVEQLPSREGGEESGGENETDGQINLGCLLYKEGQYEAACSKFFAA 180

Query: 181 LQASGYQPDLSYNLALAYYSSRQYASALKHIAEIIERGIRQHPELGVGMTTEGFDVRSVG 240
           LQASGYQPDLSYNLALAYYSSRQYASALKHIAEIIERGIRQHPELGVGMTTEG DVRSVG
Sbjct: 181 LQASGYQPDLSYNLALAYYSSRQYASALKHIAEIIERGIRQHPELGVGMTTEGIDVRSVG 240

Query: 241 NTLVLHQTALVEAFNLKAAIEYQLRNYEVAQETLTDMPPRAEEELDPVTLHNQALMNMDA 300
           NTLVLHQTALVEAFNLKAAIEYQLRNYE AQE LTDMPPRAEEELDPVTLHNQALMNMDA
Sbjct: 241 NTLVLHQTALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDA 300

Query: 301 RPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLTYKFLTPYLYD 360
           RPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHL YKFLTPYLYD
Sbjct: 301 RPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLIYKFLTPYLYD 360

Query: 361 FLDALITCQTAPEEAFIKLDGLAGMLTEQLRRLTKQVQEARHNRDDEAIKKAVNEYDETM 420
           FLDA+ITCQTAPEEAFIKLDGLAGMLTE LR+LT QVQEARHNRDDEAIKKAVNEYDETM
Sbjct: 361 FLDAVITCQTAPEEAFIKLDGLAGMLTEVLRKLTIQVQEARHNRDDEAIKKAVNEYDETM 420

Query: 421 EKYIPVLMAQAKIYWNLENYPMVEKVFRKSVEFCNDHDVWKLNVAHVLFMQENKYKEAIG 480
           EKYIPVLMAQAKIYWNLENYPMVEK+FRKSVEFCNDHDVWKLNVAHVLFMQENKYKEAIG
Sbjct: 421 EKYIPVLMAQAKIYWNLENYPMVEKIFRKSVEFCNDHDVWKLNVAHVLFMQENKYKEAIG 480

Query: 481 FYEPIVKKHYDNILNVSAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYDDPNRKM 540
           FYEPIVKKHYDNILNVSAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYDDP++KM
Sbjct: 481 FYEPIVKKHYDNILNVSAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYDDPDKKM 540

Query: 541 YHLCIVNLVIGTLYCAKGNYEFGISRVIKSLEPYNKKLGTDTWYYAKRCFLSLLENMSKH 600
           YHLCIVNLVIGTLYCAKGNY+FGISRVIKSLEPYNKKLGTDTWYYAKRCFLSLLENMSKH
Sbjct: 541 YHLCIVNLVIGTLYCAKGNYDFGISRVIKSLEPYNKKLGTDTWYYAKRCFLSLLENMSKH 600

Query: 601 MIVIHDSVIQECVQFLGHCELYGTNIPAVIEQPLEEERMHVGKNTVTDESRQLKALIYEI 660
            I++ DSVIQECVQFL HCEL+G NIPAVIEQPLEEERMHVGKNTVT ESRQLKALIYEI
Sbjct: 601 TIMLRDSVIQECVQFLEHCELHGRNIPAVIEQPLEEERMHVGKNTVTYESRQLKALIYEI 660

Query: 661 IGWN 664
           IGWN
Sbjct: 661 IGWN 664


>gi|225735593 RNA polymerase II associated protein 3 isoform 2 [Homo
           sapiens]
          Length = 631

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 6/202 (2%)

Query: 20  RLIRDARYAEAVQLLGRELQRSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE 79
           +  +  +Y EA+    + +   P +    +     Y+RL++FA+A         L+    
Sbjct: 142 KYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYT 201

Query: 80  QYRLYQAQALYKACLYPEAT----RVAFLLLDNPAYHSRVLRLQAAIKYSEGDLPGSRSL 135
           +    +  A +      EA     RV  L  +N    + + ++  A+   E   P    +
Sbjct: 202 KAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKEADI 261

Query: 136 VEQLLSGEGGEESGGDNETDG--QVNLGCLLYKEGQYEAACSKFSATLQASGYQPDLSYN 193
           V +   GE  +     N+     + + G   +KEG+YE A   ++  + A G    L  N
Sbjct: 262 VIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPAN 321

Query: 194 LALAYYSSRQYASALKHIAEII 215
            A+AY   ++Y  A K   + I
Sbjct: 322 RAMAYLKIQKYEEAEKDCTQAI 343


>gi|225735591 RNA polymerase II associated protein 3 isoform 1 [Homo
           sapiens]
          Length = 665

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 6/202 (2%)

Query: 20  RLIRDARYAEAVQLLGRELQRSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE 79
           +  +  +Y EA+    + +   P +    +     Y+RL++FA+A         L+    
Sbjct: 142 KYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYT 201

Query: 80  QYRLYQAQALYKACLYPEAT----RVAFLLLDNPAYHSRVLRLQAAIKYSEGDLPGSRSL 135
           +    +  A +      EA     RV  L  +N    + + ++  A+   E   P    +
Sbjct: 202 KAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKEADI 261

Query: 136 VEQLLSGEGGEESGGDNETDG--QVNLGCLLYKEGQYEAACSKFSATLQASGYQPDLSYN 193
           V +   GE  +     N+     + + G   +KEG+YE A   ++  + A G    L  N
Sbjct: 262 VIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPAN 321

Query: 194 LALAYYSSRQYASALKHIAEII 215
            A+AY   ++Y  A K   + I
Sbjct: 322 RAMAYLKIQKYEEAEKDCTQAI 343


>gi|225735595 RNA polymerase II associated protein 3 isoform 3 [Homo
           sapiens]
          Length = 506

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 6/167 (3%)

Query: 55  YYRLQEFALAAECYEQLGQLHPELEQYRLYQAQALYKACLYPEAT----RVAFLLLDNPA 110
           Y+RL++FA+A         L+    +    +  A +      EA     RV  L  +N  
Sbjct: 18  YFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFE 77

Query: 111 YHSRVLRLQAAIKYSEGDLPGSRSLVEQLLSGEGGEESGGDNETDG--QVNLGCLLYKEG 168
             + + ++  A+   E   P    +V +   GE  +     N+     + + G   +KEG
Sbjct: 78  ATNELRKISQALASKENSYPKEADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEG 137

Query: 169 QYEAACSKFSATLQASGYQPDLSYNLALAYYSSRQYASALKHIAEII 215
           +YE A   ++  + A G    L  N A+AY   ++Y  A K   + I
Sbjct: 138 KYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAI 184


>gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing
           protein) [Homo sapiens]
          Length = 543

 Score = 38.1 bits (87), Expect = 0.026
 Identities = 56/244 (22%), Positives = 102/244 (41%), Gaps = 50/244 (20%)

Query: 386 LTEQLRRLTKQVQEARHNRDDEAIKK----AVNEYDETME---KYIPVLMAQAKIYWNLE 438
           + E L    KQ  + +   +D   KK    A+  YD+  E     +  +  QA +Y+   
Sbjct: 214 MEEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG 273

Query: 439 NYPMVEKVFRKSVEFC--NDHDVWKLNVAHVL----FMQENKYKEAIGFYEPIVKKHYDN 492
           +Y    ++  K++E    N  D  ++  A+      + +E KYK+AI FY   + +H   
Sbjct: 274 DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-- 331

Query: 493 ILNVSAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYDDPNRKMYHLCIVNLVIGT 552
                         +  +  + ++AE    KI KE+E+L+Y +P+     L +     G 
Sbjct: 332 --------------TPDVLKKCQQAE----KILKEQERLAYINPD-----LALEEKNKGN 368

Query: 553 LYCAKGNYEFGISRVIKSLEPYNKKLGTDTWYYAKR--CFLSLLENMSKHMIVIHDSVIQ 610
               KG+Y   +    +++    K+   D   Y+ R  C+  LLE      + + D   +
Sbjct: 369 ECFQKGDYPQAMKHYTEAI----KRNPKDAKLYSNRAACYTKLLE----FQLALKD--CE 418

Query: 611 ECVQ 614
           EC+Q
Sbjct: 419 ECIQ 422



 Score = 30.8 bits (68), Expect = 4.2
 Identities = 24/81 (29%), Positives = 37/81 (45%)

Query: 27  YAEAVQLLGRELQRSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA 86
           Y +A++     ++R+P+     S    CY +L EF LA +  E+  QL P   +    +A
Sbjct: 376 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 435

Query: 87  QALYKACLYPEATRVAFLLLD 107
            AL     Y +A  V    LD
Sbjct: 436 AALEAMKDYTKAMDVYQKALD 456


>gi|194306559 kinesin light chain 1 isoform 3 [Homo sapiens]
          Length = 618

 Score = 37.0 bits (84), Expect = 0.059
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 13/132 (9%)

Query: 462 LNVAHVLFMQENKYKEAIGFYE---PIVKKHYDNILNVSAIVLANLCVSYIMTSQNEEAE 518
           LN+  +++  +NKYK+A         I +K         A  L NL V Y    + +EAE
Sbjct: 258 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 317

Query: 519 EL-MRKIEKEEEQLSYDDPN--RKMYHLCIVNLVIGTLYCAKGNYEFGISRVIKSLEPYN 575
            L  R +E  E+ L  D P+  +++ +L +       L   +G YE       ++LE Y 
Sbjct: 318 PLCKRALEIREKVLGKDHPDVAKQLNNLAL-------LCQNQGKYEEVEYYYQRALEIYQ 370

Query: 576 KKLGTDTWYYAK 587
            KLG D    AK
Sbjct: 371 TKLGPDDPNVAK 382


>gi|110735431 kinesin light chain 1 isoform 2 [Homo sapiens]
          Length = 573

 Score = 37.0 bits (84), Expect = 0.059
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 13/132 (9%)

Query: 462 LNVAHVLFMQENKYKEAIGFYE---PIVKKHYDNILNVSAIVLANLCVSYIMTSQNEEAE 518
           LN+  +++  +NKYK+A         I +K         A  L NL V Y    + +EAE
Sbjct: 258 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 317

Query: 519 EL-MRKIEKEEEQLSYDDPN--RKMYHLCIVNLVIGTLYCAKGNYEFGISRVIKSLEPYN 575
            L  R +E  E+ L  D P+  +++ +L +       L   +G YE       ++LE Y 
Sbjct: 318 PLCKRALEIREKVLGKDHPDVAKQLNNLAL-------LCQNQGKYEEVEYYYQRALEIYQ 370

Query: 576 KKLGTDTWYYAK 587
            KLG D    AK
Sbjct: 371 TKLGPDDPNVAK 382


>gi|33620730 kinesin light chain 1 isoform 1 [Homo sapiens]
          Length = 560

 Score = 37.0 bits (84), Expect = 0.059
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 13/132 (9%)

Query: 462 LNVAHVLFMQENKYKEAIGFYE---PIVKKHYDNILNVSAIVLANLCVSYIMTSQNEEAE 518
           LN+  +++  +NKYK+A         I +K         A  L NL V Y    + +EAE
Sbjct: 258 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 317

Query: 519 EL-MRKIEKEEEQLSYDDPN--RKMYHLCIVNLVIGTLYCAKGNYEFGISRVIKSLEPYN 575
            L  R +E  E+ L  D P+  +++ +L +       L   +G YE       ++LE Y 
Sbjct: 318 PLCKRALEIREKVLGKDHPDVAKQLNNLAL-------LCQNQGKYEEVEYYYQRALEIYQ 370

Query: 576 KKLGTDTWYYAK 587
            KLG D    AK
Sbjct: 371 TKLGPDDPNVAK 382


>gi|194353959 phosphoinositide-3-kinase, class 2 gamma polypeptide
           [Homo sapiens]
          Length = 1445

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 14/79 (17%)

Query: 405 DDEAIKKAVNEYDETME----KYIPVLMAQAKIYWNLENYPMVEKVFRKSVEFCNDHDVW 460
           D E  K AV + D  +     +Y+P L+   K  WNLE+ P+V+ +  +S++        
Sbjct: 734 DQEIRKVAVQQLDNLLNDELLEYLPQLVQAVKFEWNLES-PLVQLLLHRSLQ-------- 784

Query: 461 KLNVAHVLF-MQENKYKEA 478
            + VAH L+ + +N   EA
Sbjct: 785 SIQVAHRLYWLLKNAENEA 803


>gi|21361356 translocase of outer mitochondrial membrane 34 [Homo
           sapiens]
          Length = 309

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 164 LYKEGQYEAACSKFSATLQASGYQPDLSYNLALAYYSSRQYASALKHIAEIIE 216
           L K+G ++ A  K+S +L  S  +     N AL Y   +QY  A+K   E ++
Sbjct: 203 LVKKGNHKKAIEKYSESLLCSNLESATYSNRALCYLVLKQYTEAVKDCTEALK 255


>gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [Homo
            sapiens]
          Length = 2564

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 9/171 (5%)

Query: 58   LQEFALAAECYE-QLGQLHPELEQYRLYQAQALYKACLYPEAT----RVAFLLLDNPAYH 112
            L+E AL AE +  Q  +LH   E+           A    EA     R+   L D  A+ 
Sbjct: 1042 LEEAALLAERFPAQAARLHQGAEELGAEWGALASAAQACGEAVAAAGRLQRFLHDLDAFL 1101

Query: 113  SRVLRLQAAIKYSEGDLPGSRSLVEQLLSGEGGEESGGDNETDGQVNLGCLLYKEGQYEA 172
              ++R Q A   SEG LP S    + LL+     +   D   +    +  +   E    A
Sbjct: 1102 DWLVRAQEAAGGSEGPLPNSLEEADALLARHAALKEEVDQREEDYARI--VAASEALLAA 1159

Query: 173  ACSKFSATLQASGYQP--DLSYNLALAYYSSRQYASALKHIAEIIERGIRQ 221
              ++    L    + P  +L ++  L  + +R+ A    HI ++  R +RQ
Sbjct: 1160 DGAELGPGLALDEWLPHLELGWHKLLGLWEARREALVQAHIYQLFLRDLRQ 1210


>gi|91825557 kinesin light chain 3 [Homo sapiens]
          Length = 504

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 449 KSVEFCNDHDVWKLNVAHVLFMQENKYKEAIGFYEPIVKKHYDNI---LNVSAIVLANLC 505
           +S   C+      LN+  +++  +NKYKEA       ++     +       A  L NL 
Sbjct: 239 RSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIREQTLGPEHPAVAATLNNLA 298

Query: 506 VSYIMTSQNEEAEEL-MRKIEKEEEQLSYDDPN 537
           V Y    +  EAE L  R +E  E+ L  D P+
Sbjct: 299 VLYGKRGRYREAEPLCQRALEIREKVLGADHPD 331


>gi|4557291 autoimmune regulator isoform 1 [Homo sapiens]
          Length = 545

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 118 LQAAIKYSEGDLPGSRSLVEQLLSGEGGEESGGDNETDGQVNLGCLLYKEGQYEAACSKF 177
           +Q A+  S GD+PG+R  VE +L  +   ESGG  +    + +G   Y   ++E + S  
Sbjct: 188 VQRAVAMSSGDVPGARGAVEGILI-QQVFESGGSKKC---IQVGGEFYTPSKFEDSGSGK 243

Query: 178 SATLQASGYQP 188
           +    +SG +P
Sbjct: 244 NKARSSSGPKP 254


>gi|157502177 tetratricopeptide repeat domain 21A isoform 2 [Homo
           sapiens]
          Length = 1320

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 18  VYRLIRDARYAE---AVQLLGRELQRSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL 74
           +Y + +   Y+E   A  +L R L+  P S     L+   Y     F +   C E LG  
Sbjct: 505 LYLMAQVRYYSELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLE-LGVS 563

Query: 75  HP----ELEQYRLYQAQALYKACLYPEATRVAFLLLDNPA 110
           H     +   Y L +A+AL KA  YPEA +   +++  PA
Sbjct: 564 HNFQVRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLPA 603



 Score = 30.4 bits (67), Expect = 5.5
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 8/62 (12%)

Query: 468 LFMQENKYKEAIGFYEPIVKKHYDNILNVSAIVLANLCVSYIMTSQNEEAE---ELMRKI 524
           LF+ +N+ KEA+ +Y   +K   D +  ++ I+L      +I+    EEAE   E ++++
Sbjct: 343 LFILKNQVKEALLWYSEAMKLDKDGMAGLTGIILC-----HILEGHLEEAEYRLEFLKEV 397

Query: 525 EK 526
           +K
Sbjct: 398 QK 399


>gi|31377634 guanylate binding protein 4 [Homo sapiens]
          Length = 640

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 63/294 (21%), Positives = 113/294 (38%), Gaps = 63/294 (21%)

Query: 286 DPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAE 345
           D  T   Q L +MD  P E  E+  FL+Q + F            C Y +       L E
Sbjct: 252 DRPTNDKQYLNHMDEVPEENLER-HFLMQSDNF------------CSYIFTHAKTKTLRE 298

Query: 346 NAHLTYKFLTPYLYDFLDAL----ITCQTAPEEAFIKLDGLAGM----------LTEQLR 391
              +T K L   +  ++DA+    + C      A  +L+  A +          + +QLR
Sbjct: 299 GIIVTGKRLGTLVVTYVDAINSGAVPCLENAVTALAQLENPAAVQRAADHYSQQMAQQLR 358

Query: 392 RLTKQVQE-----ARHNRDDEAIKKAVNEYDETME--KYIPVLMAQAKIYWNLENYPMVE 444
             T  +QE     A   R+  A+    +  DE  E  K +   + + K  + L+N     
Sbjct: 359 LPTDTLQELLDVHAACEREAIAVFMEHSFKDENHEFQKKLVDTIEKKKGDFVLQNEEASA 418

Query: 445 KVFRKSVEFCNDH-------DVWKLNVAHVLFMQENKYKEAIGFYEPIVKKHY------D 491
           K  +  ++  ++H        ++ +   H L+++E K  E    Y+ + +K         
Sbjct: 419 KYCQAELKRLSEHLTESILRGIFSVPGGHNLYLEEKKQVE--WDYKLVPRKGVKANEVLQ 476

Query: 492 NILNVSAIVLANLCVS--------------YIMTSQNEEAEELMRKIEKEEEQL 531
           N L    +V  ++  S                M    E+ +EL+R+ +KE++Q+
Sbjct: 477 NFLQSQVVVEESILQSDKALTAGEKAIAAERAMKEAAEKEQELLREKQKEQQQM 530


>gi|157502179 tetratricopeptide repeat domain 21A isoform 1 [Homo
           sapiens]
          Length = 1321

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 30  AVQLLGRELQRSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP----ELEQYRLYQ 85
           A  +L R L+  P S     L+   Y     F +   C E LG  H     +   Y L +
Sbjct: 521 AQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLE-LGVSHNFQVRDHPLYHLIK 579

Query: 86  AQALYKACLYPEATRVAFLLLDNPA 110
           A+AL KA  YPEA +   +++  PA
Sbjct: 580 ARALNKAGDYPEAIKTLKMVIKLPA 604



 Score = 30.4 bits (67), Expect = 5.5
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 8/62 (12%)

Query: 468 LFMQENKYKEAIGFYEPIVKKHYDNILNVSAIVLANLCVSYIMTSQNEEAE---ELMRKI 524
           LF+ +N+ KEA+ +Y   +K   D +  ++ I+L      +I+    EEAE   E ++++
Sbjct: 343 LFILKNQVKEALLWYSEAMKLDKDGMAGLTGIILC-----HILEGHLEEAEYRLEFLKEV 397

Query: 525 EK 526
           +K
Sbjct: 398 QK 399


>gi|21450645 tetratricopeptide repeat domain 16 [Homo sapiens]
          Length = 873

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 43/195 (22%), Positives = 72/195 (36%), Gaps = 26/195 (13%)

Query: 30  AVQLLGRELQRSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQAL 89
           A+Q + R ++ +P   +     G  Y RLQEF  A E + ++  +  E ++  + QAQ  
Sbjct: 270 ALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQ-- 327

Query: 90  YKACLYPEATRVAFLLLDNPAYHSRVLRLQAAIKYSEGDLPGSRSLVEQLLSGEGGEESG 149
                     R   L  ++ A H           Y +G       L+ + L  E  E+  
Sbjct: 328 ----------RQLLLTYNDFAVHC----------YRQGAYQEGVLLLNKALRDEQQEKGL 367

Query: 150 GDNETDGQVNLGCLLYKEGQYEAACSKFSATLQASGYQPDLSYNLALAYYSSRQYASALK 209
             N  D    LG L + E  Y+ A +       A+     L   +       +Q+  A  
Sbjct: 368 YINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGFCEQRRKQFQKAEN 427

Query: 210 HIAEIIERGIRQHPE 224
           H +      IR +P+
Sbjct: 428 HFS----TAIRHNPQ 438


>gi|56119110 family with sequence similarity 13, member A1 isoform a
           [Homo sapiens]
          Length = 1023

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 585 YAKRCFLSLLENMSKHMIV-IHDSVIQECVQFLGHCELYGTNIPAVIE--QPLEEERMHV 641
           ++ RCFL   E+ +   I  + D +  +C Q  G   L+  +IP ++E  Q + EE+  +
Sbjct: 906 FSARCFLDQFEDDADGFISPMDDKIPSKCSQDTGLSNLHAASIPELLEHLQEMREEKKRI 965

Query: 642 GK 643
            K
Sbjct: 966 RK 967


>gi|62865869 family with sequence similarity 13, member A1 isoform b
           [Homo sapiens]
          Length = 697

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 585 YAKRCFLSLLENMSKHMIV-IHDSVIQECVQFLGHCELYGTNIPAVIE--QPLEEERMHV 641
           ++ RCFL   E+ +   I  + D +  +C Q  G   L+  +IP ++E  Q + EE+  +
Sbjct: 580 FSARCFLDQFEDDADGFISPMDDKIPSKCSQDTGLSNLHAASIPELLEHLQEMREEKKRI 639

Query: 642 GK 643
            K
Sbjct: 640 RK 641


>gi|22749211 transmembrane and tetratricopeptide repeat containing 2
           [Homo sapiens]
          Length = 836

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 29/196 (14%)

Query: 159 NLGCLLYKEGQYEAACSKFSATLQASGYQPDLSYNLALAYYSSRQYASALKHIAEIIERG 218
           NLG +L  + +   A S +   L       D+ YNL L    + ++A AL +     +  
Sbjct: 498 NLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHY----YKLA 553

Query: 219 IRQHPELGVGMTTEGFDVRSVGNTLVLHQTAL----VEAFNLK----------------A 258
           I   P L       G  + + G T    +T L    +   NLK                 
Sbjct: 554 IGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLKDPHAHKSSVTSCLYNLG 613

Query: 259 AIEYQLRNYEVAQETLTDMPPRAEEELDPVTLHN---QALMNMDARPTEGFEKLQFLLQQ 315
            + ++  +YE A     +   +   +  P +L+N   +A M +   P      ++ L  +
Sbjct: 614 KLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSK 673

Query: 316 NPFPPE--TFGNLLLL 329
               P   T+G LL L
Sbjct: 674 TDHIPAHLTYGKLLAL 689


>gi|41871960 kinesin-like 8 isoform b [Homo sapiens]
          Length = 637

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 13/126 (10%)

Query: 462 LNVAHVLFMQENKYKEAIGFYEPIVKKHYDNI---LNVSAIVLANLCVSYIMTSQNEEAE 518
           LN+  +++  +NKYKEA       +      +       A  L NL V Y    + +EAE
Sbjct: 274 LNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAE 333

Query: 519 EL-MRKIEKEEEQLSYDDPN--RKMYHLCIVNLVIGTLYCAKGNYEFGISRVIKSLEPYN 575
            L  R +E  E+ L  + P+  +++ +L +       L   +G YE       ++L  Y 
Sbjct: 334 PLCQRALEIREKVLGTNHPDVAKQLNNLAL-------LCQNQGKYEAVERYYQRALAIYE 386

Query: 576 KKLGTD 581
            +LG D
Sbjct: 387 GQLGPD 392


>gi|41871955 kinesin-like 8 isoform a [Homo sapiens]
          Length = 619

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 13/126 (10%)

Query: 462 LNVAHVLFMQENKYKEAIGFYEPIVKKHYDNI---LNVSAIVLANLCVSYIMTSQNEEAE 518
           LN+  +++  +NKYKEA       +      +       A  L NL V Y    + +EAE
Sbjct: 256 LNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAE 315

Query: 519 EL-MRKIEKEEEQLSYDDPN--RKMYHLCIVNLVIGTLYCAKGNYEFGISRVIKSLEPYN 575
            L  R +E  E+ L  + P+  +++ +L +       L   +G YE       ++L  Y 
Sbjct: 316 PLCQRALEIREKVLGTNHPDVAKQLNNLAL-------LCQNQGKYEAVERYYQRALAIYE 368

Query: 576 KKLGTD 581
            +LG D
Sbjct: 369 GQLGPD 374


>gi|41871946 kinesin-like 8 isoform a [Homo sapiens]
          Length = 619

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 13/126 (10%)

Query: 462 LNVAHVLFMQENKYKEAIGFYEPIVKKHYDNI---LNVSAIVLANLCVSYIMTSQNEEAE 518
           LN+  +++  +NKYKEA       +      +       A  L NL V Y    + +EAE
Sbjct: 256 LNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAE 315

Query: 519 EL-MRKIEKEEEQLSYDDPN--RKMYHLCIVNLVIGTLYCAKGNYEFGISRVIKSLEPYN 575
            L  R +E  E+ L  + P+  +++ +L +       L   +G YE       ++L  Y 
Sbjct: 316 PLCQRALEIREKVLGTNHPDVAKQLNNLAL-------LCQNQGKYEAVERYYQRALAIYE 368

Query: 576 KKLGTD 581
            +LG D
Sbjct: 369 GQLGPD 374


>gi|25952122 Bardet-Biedl syndrome 4 [Homo sapiens]
          Length = 519

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 159 NLGCLLYKEGQYEAACSKFSATLQASGYQPDLSYNLALAYYSSRQYASALKHIAEII 215
           N+G   + + +Y AA S        + +   + YNL L + + +QYASA   ++  I
Sbjct: 275 NIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAI 331


>gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo
           sapiens]
          Length = 717

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 36/150 (24%), Positives = 73/150 (48%), Gaps = 20/150 (13%)

Query: 383 AGMLTEQLRRLTKQVQEARHNRDDEAI--KKAVNEYDETMEKYIPVLMAQ---AKIYWNL 437
           A  + E++++  K+++E  ++ D  +I  ++A N+  +   K    L+AQ   +  +W L
Sbjct: 11  AEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKL 70

Query: 438 --------ENYPMVEKVFRKSVEFCNDHDVWKLNVAHVLFMQENKYKEAIGFYEPIVKKH 489
                   +NY  VEK+F++ +      D+WK    ++ +++E K K  +  Y+  + + 
Sbjct: 71  YIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWK---CYLSYVRETKGK--LPSYKEKMAQA 125

Query: 490 YDNILNV--SAIVLANLCVSYIMTSQNEEA 517
           YD  L+     I+   + V YI   +  EA
Sbjct: 126 YDFALDKIGMEIMSYQIWVDYINFLKGVEA 155


>gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]
          Length = 2481

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 61/253 (24%), Positives = 92/253 (36%), Gaps = 52/253 (20%)

Query: 34  LGRELQRSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQALYKAC 93
           + REL+        LS LG  +    E+  AA  YEQ  +L P+L+       +   K C
Sbjct: 583 IARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQ-----DMEGEGKVC 637

Query: 94  LYPEATRVAFLLLDNPAY-HSRVLRLQAAIKYSEGDLPGSRSLVEQLLSGEGGEESGGDN 152
                         N  Y H  +   Q A+KY E DL  ++ L ++L            +
Sbjct: 638 -------------HNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKL------------S 672

Query: 153 ETDGQVNLGCLLYKEGQYEAACSKFSATLQASGYQPDLSYNLALAYYSSRQYAS--ALKH 210
           +     NLG               F A L  S  +    Y L+LA   +   A   AL +
Sbjct: 673 QAKAYCNLGL-------------AFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGN 719

Query: 211 IAEII-----ERGIRQHPELGVGMTTEGFDVRSVGNTLVLHQTALVEAFNLKAAIEYQLR 265
           + +I        G  +  E  +G+  +  D R   +      TA         A+ Y  +
Sbjct: 720 LGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQ 779

Query: 266 NYEVAQETLTDMP 278
             EV QE L+D+P
Sbjct: 780 ELEVYQE-LSDLP 791


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 101  VAFLLLDNPAYHSRVLRLQAAIKYSEGDLPGSRSLVEQ 138
            V F++LDNP+    +L ++  I    G++P  RS +E+
Sbjct: 5523 VIFVVLDNPSSRDSILDIKVPIFKGPGEMPEIRSYMEE 5560


>gi|148806872 lupus brain antigen 1 [Homo sapiens]
          Length = 2375

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 27   YAEAVQLLGRELQRSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY---RL 83
            YA+  QL  +  +R  + R       Y Y R Q +  A  C+EQ+ +    L+ Y    L
Sbjct: 1229 YAKEFQLSAQLCERLGKIRDA----AYFYKRSQCYKDAFRCFEQIQEFDLALKMYCQEEL 1284

Query: 84   YQAQALYKACLYPEATRVAFLLLDNPAYHSRVLRLQAAIKY 124
            ++ +A      Y E  +   L +   +Y +    L+AA KY
Sbjct: 1285 FE-EAAIAVEKYEEMLKTKTLPISKLSYSASQFYLEAAAKY 1324


>gi|37622896 LON peptidase N-terminal domain and ring finger 3
           isoform 2 [Homo sapiens]
          Length = 718

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 127 GDLPGSRSLVEQLLSGEGGEESGGDNETDGQVNLGCLLYKEGQYEAACSKFSATLQASGY 186
           G  P     V  +LSG  G+   G        + G  LY+E Q EAA  K++  ++ +  
Sbjct: 216 GQQPPPPLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVKLAPN 275

Query: 187 QPDLSYNLALAYYSSRQYASALKHIAEII----ERGIRQHPELGVGMTTEGFDVRSVGNT 242
              L  N +  Y++   + +AL H AEI       G + + EL    + E    R  G++
Sbjct: 276 DHLLYSNRSQIYFTLESHENAL-HDAEIACKLRPMGFKDNLELPHCSSQEEAAARGDGSS 334

Query: 243 LV 244
           L+
Sbjct: 335 LM 336


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,368,683
Number of Sequences: 37866
Number of extensions: 1067890
Number of successful extensions: 3319
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3282
Number of HSP's gapped (non-prelim): 65
length of query: 665
length of database: 18,247,518
effective HSP length: 109
effective length of query: 556
effective length of database: 14,120,124
effective search space: 7850788944
effective search space used: 7850788944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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