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Search of human proteins with 109698609
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109698609 BTG3 associated nuclear protein isoform b [Homo
sapiens]
(491 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109698609 BTG3 associated nuclear protein isoform b [Homo sap... 985 0.0
gi|17986266 BTG3 associated nuclear protein isoform a [Homo sapi... 931 0.0
gi|239751142 PREDICTED: hypothetical protein XP_002347724 [Homo ... 346 3e-95
gi|55741677 SET domain containing 1A [Homo sapiens] 40 0.006
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ... 39 0.008
gi|193794843 BEN domain containing 2 [Homo sapiens] 37 0.053
gi|221139761 zinc finger protein 853 [Homo sapiens] 35 0.12
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 35 0.12
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 35 0.12
gi|224458301 family with sequence similarity 186, member A [Homo... 35 0.20
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 35 0.20
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 35 0.20
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 34 0.35
gi|146134388 YLP motif containing 1 [Homo sapiens] 34 0.35
gi|38570099 glutamine-rich 1 [Homo sapiens] 34 0.35
gi|38570097 glutamine-rich 1 [Homo sapiens] 34 0.35
gi|21389577 hypothetical protein LOC146705 [Homo sapiens] 33 0.59
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 33 0.77
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 33 0.77
gi|38788274 bromodomain PHD finger transcription factor isoform ... 32 1.0
gi|42476296 tropomyosin 2 (beta) isoform 1 [Homo sapiens] 32 1.3
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 32 1.3
gi|149944526 additional sex combs like 3 [Homo sapiens] 32 1.3
gi|67010025 Sp4 transcription factor [Homo sapiens] 32 1.7
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 32 1.7
gi|31657109 zinc finger protein 282 [Homo sapiens] 32 1.7
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 1.7
gi|238859557 regulatory factor X1 [Homo sapiens] 31 2.9
gi|21618342 signal transducer and activator of transcription 5A ... 31 2.9
gi|4758472 G protein pathway suppressor 2 [Homo sapiens] 31 2.9
>gi|109698609 BTG3 associated nuclear protein isoform b [Homo
sapiens]
Length = 491
Score = 985 bits (2547), Expect = 0.0
Identities = 491/491 (100%), Positives = 491/491 (100%)
Query: 1 MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI 60
MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI
Sbjct: 1 MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI 60
Query: 61 NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR 120
NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR
Sbjct: 61 NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR 120
Query: 121 CAVPGRRQNTIVVKVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTLITLNSEE 180
CAVPGRRQNTIVVKVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTLITLNSEE
Sbjct: 121 CAVPGRRQNTIVVKVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTLITLNSEE 180
Query: 181 DYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREVQAVSNLS 240
DYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREVQAVSNLS
Sbjct: 181 DYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREVQAVSNLS 240
Query: 241 GQGKHGKKQLDPLTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVK 300
GQGKHGKKQLDPLTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVK
Sbjct: 241 GQGKHGKKQLDPLTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVK 300
Query: 301 SFSRRTPNSSSYCPSEPMMSTPPPASELPQPQPQPQALHYALANAQQVQIHQIGEDGQVQ 360
SFSRRTPNSSSYCPSEPMMSTPPPASELPQPQPQPQALHYALANAQQVQIHQIGEDGQVQ
Sbjct: 301 SFSRRTPNSSSYCPSEPMMSTPPPASELPQPQPQPQALHYALANAQQVQIHQIGEDGQVQ 360
Query: 361 VIPQGHLHIAQVPQGEQVQITQDSEGNLQIHHVGQDGQLLEATRIPCLLAPSVFKASSGQ 420
VIPQGHLHIAQVPQGEQVQITQDSEGNLQIHHVGQDGQLLEATRIPCLLAPSVFKASSGQ
Sbjct: 361 VIPQGHLHIAQVPQGEQVQITQDSEGNLQIHHVGQDGQLLEATRIPCLLAPSVFKASSGQ 420
Query: 421 VLQGAQLIAVASSDPAAAGVDGSPLQGSDIQVQYVQLAPVSDHTAGAQTAEALQPTLQPE 480
VLQGAQLIAVASSDPAAAGVDGSPLQGSDIQVQYVQLAPVSDHTAGAQTAEALQPTLQPE
Sbjct: 421 VLQGAQLIAVASSDPAAAGVDGSPLQGSDIQVQYVQLAPVSDHTAGAQTAEALQPTLQPE 480
Query: 481 MQLEHGAIQIQ 491
MQLEHGAIQIQ
Sbjct: 481 MQLEHGAIQIQ 491
>gi|17986266 BTG3 associated nuclear protein isoform a [Homo
sapiens]
Length = 469
Score = 931 bits (2406), Expect = 0.0
Identities = 469/491 (95%), Positives = 469/491 (95%), Gaps = 22/491 (4%)
Query: 1 MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI 60
MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI
Sbjct: 1 MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI 60
Query: 61 NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR 120
NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR
Sbjct: 61 NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR 120
Query: 121 CAVPGRRQNTIVVKVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTLITLNSEE 180
CAVPGRRQNTIVVKVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTLITLNSEE
Sbjct: 121 CAVPGRRQNTIVVKVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTLITLNSEE 180
Query: 181 DYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREVQAVSNLS 240
DYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREVQAVSNLS
Sbjct: 181 DYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREVQAVSNLS 240
Query: 241 GQGKHGKKQLDPLTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVK 300
GQGKHGKKQLDPLTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVK
Sbjct: 241 GQGKHGKKQLDPLTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVK 300
Query: 301 SFSRRTPNSSSYCPSEPMMSTPPPASELPQPQPQPQALHYALANAQQVQIHQIGEDGQVQ 360
SFSRRTPNSSSYCPSEPMMSTPPPASELPQPQPQPQALHYALANAQQVQIHQIGEDGQVQ
Sbjct: 301 SFSRRTPNSSSYCPSEPMMSTPPPASELPQPQPQPQALHYALANAQQVQIHQIGEDGQVQ 360
Query: 361 VIPQGHLHIAQVPQGEQVQITQDSEGNLQIHHVGQDGQLLEATRIPCLLAPSVFKASSGQ 420
VIPQGHLHIAQVPQGEQVQITQDSEGNLQIHHVGQD GQ
Sbjct: 361 VIPQGHLHIAQVPQGEQVQITQDSEGNLQIHHVGQD----------------------GQ 398
Query: 421 VLQGAQLIAVASSDPAAAGVDGSPLQGSDIQVQYVQLAPVSDHTAGAQTAEALQPTLQPE 480
VLQGAQLIAVASSDPAAAGVDGSPLQGSDIQVQYVQLAPVSDHTAGAQTAEALQPTLQPE
Sbjct: 399 VLQGAQLIAVASSDPAAAGVDGSPLQGSDIQVQYVQLAPVSDHTAGAQTAEALQPTLQPE 458
Query: 481 MQLEHGAIQIQ 491
MQLEHGAIQIQ
Sbjct: 459 MQLEHGAIQIQ 469
>gi|239751142 PREDICTED: hypothetical protein XP_002347724 [Homo
sapiens]
Length = 364
Score = 346 bits (887), Expect = 3e-95
Identities = 206/350 (58%), Positives = 223/350 (63%), Gaps = 64/350 (18%)
Query: 1 MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI 60
MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI
Sbjct: 27 MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSI 86
Query: 61 NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR 120
NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR
Sbjct: 87 NQTICLRLDSIEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR 146
Query: 121 CAVP-------GRRQNTIVVKVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNVTL 173
C VP RQN IV K+ ED S + A DS+ + N +
Sbjct: 147 CVVPQTTVILNNDRQNAIVAKM--------EDPLS-NRAPDSLENVISNAVPGRRQNTIV 197
Query: 174 ITLNSEEDYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREV 233
+ + +ED + G+ +
Sbjct: 198 VKVPGQEDSHHED--GESGS---------------------------------------- 215
Query: 234 QAVSNLSGQGKHGKKQLDP---LTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRR 290
+A ++S G+ G + + L HLFYKFGITESDWYRIKQSIDSKCRTAWRR
Sbjct: 216 EASDSVSSCGQAGSQSIGSNVTLITLNSEGHLFYKFGITESDWYRIKQSIDSKCRTAWRR 275
Query: 291 KQRGQSLAVKSFSRRTPNSSSYCPSEPMMSTP---PPASELPQPQPQPQA 337
KQRGQSLAVKSFSRRTPNSSSYCPS P PP Q Q P A
Sbjct: 276 KQRGQSLAVKSFSRRTPNSSSYCPSAASRGHPHPLPPGPIRLQSQQWPGA 325
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 39.7 bits (91), Expect = 0.006
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 273 WYRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCPSEPMMSTP----PPASEL 328
W R ++ R A R + G A + R P+ +SY P EP T PPASE
Sbjct: 373 WNRYQRHTSYPPRRATREEPPGAPFAENTAERFPPSYTSYLPPEPSRPTDQDYRPPASEA 432
Query: 329 PQPQP 333
P P+P
Sbjct: 433 PPPEP 437
>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
sapiens]
Length = 1835
Score = 39.3 bits (90), Expect = 0.008
Identities = 54/179 (30%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 299 VKSFSRRTPNSSSYCPSEPMMSTPPPASELPQPQPQPQALHYALANAQQVQIH-QIGEDG 357
V + + + P + S + PP S++ + Q Q H QQVQ+ Q +
Sbjct: 977 VPATNNQVPTAMSSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPAPPPQQVQVQVQQPQQV 1036
Query: 358 QVQVIP-QGHLHIAQVPQGEQVQITQDSEGNLQIHHVGQD---GQL-LEATRIPCLLAPS 412
Q+QV P Q + + Q GE I Q L + G G+L L A +IP P+
Sbjct: 1037 QMQVQPQQSNAGVGQPASGESSLIKQ-----LLLPKRGPSTPGGKLILPAPQIP---PPN 1088
Query: 413 VFKASSGQVLQGAQLIAVASSDPAAAGVDG-SPLQGSDIQVQYVQLAP-VSDHTAGAQT 469
+A S QV + VAS+ A GV G +P Q + Q VQL P + G QT
Sbjct: 1089 NARAPSPQV-----VYQVASNQAAGFGVQGQTPAQQLLVGQQNVQLVPSAMPPSGGVQT 1142
>gi|193794843 BEN domain containing 2 [Homo sapiens]
Length = 799
Score = 36.6 bits (83), Expect = 0.053
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 203 IPSDMLHISTNCRTAEKMALTLLDYLFHREVQAVSNLSGQGKHGKKQLDPLTIYGIRCHL 262
+P +L ++ A A L+ LF ++V SN+ G KHG LDP I +R L
Sbjct: 672 MPCSVLTLAKTKSCASLSARYLIQKLFTKDVLVQSNVYGNLKHGLCALDPNKISALREFL 731
Query: 263 FYKFGITE-----SDWYRIKQSIDSKCRT----AWRRKQRGQSL 297
+ I + DW SI+S R+ R + R QSL
Sbjct: 732 QENYPICDLSENGRDWKSCVTSINSGIRSLRHDVRRAEARSQSL 775
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 35.4 bits (80), Expect = 0.12
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 294 GQSLAVKSFSRRTPNSSSYCPSEPMMSTPPPASELPQPQPQPQALHYALANAQQVQIHQI 353
G S +S P + P P +S P ASE+ + Q QQ + Q
Sbjct: 44 GGSGGSESQEEEEPQERNSSPQRPAVSAPVGASEIAEETRPGQRELQLQQLEQQPEPQQQ 103
Query: 354 GEDGQVQVIPQGHLHIAQVPQGE-QVQITQ-DSEGNLQIHH 392
+ Q+Q PQ HL + Q PQ + Q Q++Q E + +HH
Sbjct: 104 PQHEQLQQ-PQPHLELQQQPQQDGQQQLSQLQQEKHQSVHH 143
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 35.4 bits (80), Expect = 0.12
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 289 RRKQRGQSLAV---KSFSRRTPNSSSYCPSEPMMSTPPPASELPQPQPQP 335
RR+QRG++ A+ RR +S P P +++PPP ELP+P P P
Sbjct: 190 RRRQRGRNPALIVRGPGPRRGGGLTSAPPGLPPLASPPPFWELPRPPPPP 239
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 35.4 bits (80), Expect = 0.12
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 294 GQSLAVKSFSRRTPNSSSYCPSEPMMSTPP---PASELPQPQPQPQALHYALANAQ 346
G L +KS R + +CP++P+ S P ASE P P P YAL A+
Sbjct: 1976 GSDLLLKSPQRFPESPKRFCPADPLHSAAPGPFSASEAPYPAPPASPAPYALPVAE 2031
>gi|224458301 family with sequence similarity 186, member A [Homo
sapiens]
Length = 2351
Score = 34.7 bits (78), Expect = 0.20
Identities = 48/186 (25%), Positives = 67/186 (36%), Gaps = 28/186 (15%)
Query: 316 EPMMSTPPPASELPQP-------QPQPQALHYALANAQQVQIHQIGEDGQVQVIPQGHLH 368
EP+ TPPP+ + P QP + +H AQ+V I + Q QG
Sbjct: 1044 EPISITPPPSLQYSLPGALPISGQPLTKCIHLTPQQAQEVGITLTPQQAQA----QGITL 1099
Query: 369 IAQVPQGEQVQITQDSEGNLQIHHVGQDGQLLEATRIP-------CLLAPSVFKASS-GQ 420
Q Q + +T L+I Q Q L P L P +A
Sbjct: 1100 TLQQAQELGIPLTPQQAQALEILFTPQQAQALGIPLTPQQTQVQGITLTPQQDQAPGISL 1159
Query: 421 VLQGAQLIAVASSDPAAAGVDGSPLQGSDIQVQYVQLAPVSDHTAGAQTAEALQPTLQPE 480
Q AQ + + + P A G PL Q + L P Q A+AL+ +L P+
Sbjct: 1160 TTQQAQKLGIPLT-PQQAQALGIPLTPQQAQELGIPLTP--------QQAQALRVSLTPQ 1210
Query: 481 MQLEHG 486
E G
Sbjct: 1211 QAQELG 1216
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 34.7 bits (78), Expect = 0.20
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 266 FGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCPSEPMMSTPPPA 325
F +TESD + + KCR R+ +L + TP ++ PS P PPA
Sbjct: 900 FNLTESDTVKRRP----KCR---EREPLQTALLAFGVASATPGPAAPLPS-PTPGESPPA 951
Query: 326 SELPQPQP 333
S LPQP+P
Sbjct: 952 SSLPQPEP 959
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 34.7 bits (78), Expect = 0.20
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 266 FGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCPSEPMMSTPPPA 325
F +TESD + + KCR R+ +L + TP ++ PS P PPA
Sbjct: 982 FNLTESDTVKRRP----KCR---EREPLQTALLAFGVASATPGPAAPLPS-PTPGESPPA 1033
Query: 326 SELPQPQP 333
S LPQP+P
Sbjct: 1034 SSLPQPEP 1041
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 33.9 bits (76), Expect = 0.35
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
Query: 314 PSEPMMSTPPPASELPQPQPQPQALHYALANAQQVQIHQIGED-GQVQVIPQGHLHIAQV 372
P + + P P S PQPQ P L++ QQ QI G+ GQ +P +V
Sbjct: 68 PQQKIQIVPQPPSSQPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRLSVP------VKV 121
Query: 373 PQGEQVQITQDSEGNLQIHHVGQDGQLLEATRIPCLLAPSVFKASSG 419
Q +Q + L + V L A+ + L +P+ SG
Sbjct: 122 VLQPQAGSSQGASSGLSVVKV------LSASEVAALSSPASSAPHSG 162
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 33.9 bits (76), Expect = 0.35
Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 314 PSEPMMSTPPPASELPQPQP--QPQA-----------LHYALANAQQVQIHQIGEDGQVQ 360
PS PPP E+P P P +PQ+ L A A+ QQ Q H++G Q Q
Sbjct: 346 PSSEEPPLPPPNEEVPPPLPPEEPQSEDPEEDARLKQLQAAAAHWQQHQQHRVG--FQYQ 403
Query: 361 VIPQGHLHIAQVPQGEQVQITQ 382
I Q H + Q+ Q Q QI Q
Sbjct: 404 GIMQKHTQLQQILQQYQ-QIIQ 424
Score = 32.7 bits (73), Expect = 0.77
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 20/91 (21%)
Query: 314 PSEPMMSTPPPASELPQPQPQPQALHYALANAQQVQIHQIGEDGQVQVIPQGH------L 367
PS P++ PP S +P P P P + ++ VQ Q + GH
Sbjct: 1603 PSAPVLPPPPVHSSIPPPGPVPMGMP-PMSKPPPVQ----------QTVDYGHGRDISTN 1651
Query: 368 HIAQVPQGEQVQITQD---SEGNLQIHHVGQ 395
+ Q+P GE++ + D + H GQ
Sbjct: 1652 KVEQIPYGERITLRPDPLPERSTFETEHAGQ 1682
>gi|38570099 glutamine-rich 1 [Homo sapiens]
Length = 776
Score = 33.9 bits (76), Expect = 0.35
Identities = 53/222 (23%), Positives = 81/222 (36%), Gaps = 52/222 (23%)
Query: 274 YRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCPSEP----MMSTPPPASELP 329
+R+K+ +DS Q Q A + + + Y S ++ P +
Sbjct: 25 HRMKEFLDSLASKGPEALQEFQQTATTTMVYQQGGNCIYTDSTEVAGSLLELACPVTTSV 84
Query: 330 QPQPQPQALHYALANAQQVQIHQIGEDGQVQVIPQGHLHIAQVPQGEQVQITQDSEGNLQ 389
QPQ Q + QQ+Q+ Q QVQV + + Q PQ Q++ L
Sbjct: 85 QPQTQQE---------QQIQVQQ---PQQVQV----QVQVQQSPQ----QVSAQLSPQLT 124
Query: 390 IHHVGQDGQLLEATRIPCLLAPSVFKASSGQVLQGAQLIAVASSDPAAAGVDGSPLQGSD 449
+H + T P + + GQ Q A A + P+ S LQ +
Sbjct: 125 VH---------QPTEQPIQVQVQI----QGQAPQSA---APSIQTPSLQSPSPSQLQAAQ 168
Query: 450 IQVQYVQLAPVSDHTAGAQTAEALQPTLQPEMQLEHGAIQIQ 491
IQVQ+V Q A+ +Q PE + H IQ Q
Sbjct: 169 IQVQHV------------QAAQQIQAAEIPEEHIPHQQIQAQ 198
>gi|38570097 glutamine-rich 1 [Homo sapiens]
Length = 776
Score = 33.9 bits (76), Expect = 0.35
Identities = 53/222 (23%), Positives = 81/222 (36%), Gaps = 52/222 (23%)
Query: 274 YRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCPSEP----MMSTPPPASELP 329
+R+K+ +DS Q Q A + + + Y S ++ P +
Sbjct: 25 HRMKEFLDSLASKGPEALQEFQQTATTTMVYQQGGNCIYTDSTEVAGSLLELACPVTTSV 84
Query: 330 QPQPQPQALHYALANAQQVQIHQIGEDGQVQVIPQGHLHIAQVPQGEQVQITQDSEGNLQ 389
QPQ Q + QQ+Q+ Q QVQV + + Q PQ Q++ L
Sbjct: 85 QPQTQQE---------QQIQVQQ---PQQVQV----QVQVQQSPQ----QVSAQLSPQLT 124
Query: 390 IHHVGQDGQLLEATRIPCLLAPSVFKASSGQVLQGAQLIAVASSDPAAAGVDGSPLQGSD 449
+H + T P + + GQ Q A A + P+ S LQ +
Sbjct: 125 VH---------QPTEQPIQVQVQI----QGQAPQSA---APSIQTPSLQSPSPSQLQAAQ 168
Query: 450 IQVQYVQLAPVSDHTAGAQTAEALQPTLQPEMQLEHGAIQIQ 491
IQVQ+V Q A+ +Q PE + H IQ Q
Sbjct: 169 IQVQHV------------QAAQQIQAAEIPEEHIPHQQIQAQ 198
>gi|21389577 hypothetical protein LOC146705 [Homo sapiens]
Length = 525
Score = 33.1 bits (74), Expect = 0.59
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 295 QSLAVKSFSRRTPNSSSYCPSEPMMSTPPPASELPQPQPQPQA 337
Q L+ S R+P SS PS P+ + PP AS +P P +A
Sbjct: 392 QPLSSTPVSSRSPAPSSGMPSSPVPTPPPDASPIPAPGDPSEA 434
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 32.7 bits (73), Expect = 0.77
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 309 SSSYCPSEPMMSTPPPASELPQPQPQPQ 336
S + P P+ + PP PQPQPQPQ
Sbjct: 388 SRAMLPGSPLFTRAPPPKLQPQPQPQPQ 415
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 32.7 bits (73), Expect = 0.77
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 309 SSSYCPSEPMMSTPPPASELPQPQPQPQ 336
S + P P+ + PP PQPQPQPQ
Sbjct: 388 SRAMLPGSPLFTRAPPPKLQPQPQPQPQ 415
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 32.3 bits (72), Expect = 1.0
Identities = 37/182 (20%), Positives = 75/182 (41%), Gaps = 7/182 (3%)
Query: 309 SSSYCPSEPMMSTPPPASELPQPQPQPQALHYALANAQQVQIHQIGEDGQVQV-IPQGHL 367
+S P +P S P+ PQ QPQ Q+ L++ Q + + + Q+ I Q
Sbjct: 2371 TSQPIPIQPHTSLQIPSQGQPQSQPQVQSSTQTLSSGQTLNQVTVSSPSRPQLQIQQPQP 2430
Query: 368 HIAQVPQ-GEQVQITQDSEGNLQIHHVGQDGQLLEATRIPCLLAPSVFKASSGQVLQGAQ 426
+ VPQ +QVQ+ + + Q + + +I L + ++S+ Q Q
Sbjct: 2431 QVIAVPQLQQQVQVLSQIQSQVVAQIQAQQSGVPQ--QIKLQLPIQIQQSSAVQTHQIQN 2488
Query: 427 LIAVASSDPAAAGVDGSPLQGSDIQVQYVQLAPVSDHTAGAQTAEALQPTLQPEMQLEHG 486
++ V ++ L+ + + Q+ +HT A + +Q ++ ++H
Sbjct: 2489 VVTVQAASVQEQLQRVQQLRDQQQKKKQQQIEIKREHTLQASNQSEI---IQKQVVMKHN 2545
Query: 487 AI 488
A+
Sbjct: 2546 AV 2547
>gi|42476296 tropomyosin 2 (beta) isoform 1 [Homo sapiens]
Length = 284
Score = 32.0 bits (71), Expect = 1.3
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 25 VLENHVVTDEDEPALKRQRLEI--NCQDPSIKSFLYSINQTICLR--LDSIEAKLQALEA 80
V+EN + DE++ L+ +L+ + + S + + + + L L+ E + + E+
Sbjct: 129 VIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAES 188
Query: 81 TCKSLEEKLDLVTNKQHS 98
C LEE+L +VTN S
Sbjct: 189 KCGDLEEELKIVTNNLKS 206
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 32.0 bits (71), Expect = 1.3
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 17/100 (17%)
Query: 293 RGQSLAVKSFSRRTPNSSSYCPSE--PMMSTPPPASELPQ--------------PQPQPQ 336
+ QS + + R ++ ++CPS P +P P S P P+PQP
Sbjct: 2416 QSQSSSQSPLTPRPLSAEAFCPSPVTPRFQSPDPYSRPPSRPQSRDPFAPLHKPPRPQPP 2475
Query: 337 ALHYALANAQQVQIHQIGEDGQVQVIPQGHLHIAQVPQGE 376
+ + + + G + P G LH A+VP G+
Sbjct: 2476 EVAFKAGSLAHTSLGAGGFPAALPAGPAGELH-AKVPSGQ 2514
>gi|149944526 additional sex combs like 3 [Homo sapiens]
Length = 2248
Score = 32.0 bits (71), Expect = 1.3
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 307 PNSSSYCPSEPMMSTPPPASELPQPQPQPQALHYALANAQ 346
PN + P P PPP LP P P P L L NA+
Sbjct: 2010 PNKALVHPPPPPPPPPPPPLALPPPPPPPPPLPPPLPNAE 2049
>gi|67010025 Sp4 transcription factor [Homo sapiens]
Length = 784
Score = 31.6 bits (70), Expect = 1.7
Identities = 45/204 (22%), Positives = 70/204 (34%), Gaps = 50/204 (24%)
Query: 320 STPPPASELPQPQPQPQALHYALAN-----AQQVQIHQIGEDGQVQVI----PQGHLHIA 370
STPP + E QP + + +N + + GQ QVI P G +
Sbjct: 107 STPPASKENNVSQPASSSSSSSSSNNGSASPTKTKSGNSSTPGQFQVIQVQNPSGSVQYQ 166
Query: 371 QVPQ-----GEQVQIT-------QDSEGNLQIHHVGQDGQLLEATR-------------- 404
+PQ G+Q+QI QD +G +Q+ G + +L A
Sbjct: 167 VIPQLQTVEGQQIQINPTSSSSLQDLQGQIQLISAGNNQAILTAANRTASGNILAQNLAN 226
Query: 405 --IPCLLAPSVFKASSGQVLQGAQLIAVASSDPAAAGVDGSPLQGSDIQVQYVQLAPVSD 462
+P + P V Q L G Q V + GV + L +++
Sbjct: 227 QTVPVQIRPGVSIPLQLQTLPGTQAQVVTTLPINIGGVT-------------LALPVINN 273
Query: 463 HTAGAQTAEALQPTLQPEMQLEHG 486
AG T + QP + +G
Sbjct: 274 VAAGGGTGQVGQPAATADSGTSNG 297
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 31.6 bits (70), Expect = 1.7
Identities = 45/170 (26%), Positives = 61/170 (35%), Gaps = 22/170 (12%)
Query: 319 MSTPPPASELPQPQPQP---QALHYALANAQQVQIHQIGEDGQVQVIPQGHLHIAQVPQG 375
+ PP + P QPQP QAL L Q HQ Q Q P +Q+P
Sbjct: 264 LQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQ--PPPQPQQPPVAQNQPSQLPPQ 321
Query: 376 EQVQITQDSEGNLQIHHVGQDGQLL-EATRIPCLLAPSVFKASSGQVLQGAQLIAVASSD 434
Q Q L GQ+L + + AP V + Q Q AV ++
Sbjct: 322 SQTQPLVSQAQAL-------PGQMLYTQPPLKFVRAPMVVQQPPVQPQVQQQQTAVQTAQ 374
Query: 435 PAAAGVDGSPLQGSDIQVQYVQLAPVSDHTAG--AQTAEALQPTLQPEMQ 482
A G +QV L +S + G QT +++ P QP Q
Sbjct: 375 AAQMVAPG-------VQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQ 417
>gi|31657109 zinc finger protein 282 [Homo sapiens]
Length = 671
Score = 31.6 bits (70), Expect = 1.7
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 318 MMSTPPPASELPQPQPQP 335
M+ PPPA PQPQPQP
Sbjct: 399 MVKNPPPAPPQPQPQPQP 416
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 31.6 bits (70), Expect = 1.7
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 280 IDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSSYCPSEPMMSTPPP 324
+DSK R + RR + G S VK R P + S S P P P
Sbjct: 1585 VDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAP 1629
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 30.8 bits (68), Expect = 2.9
Identities = 43/193 (22%), Positives = 66/193 (34%), Gaps = 32/193 (16%)
Query: 314 PSEPMMSTPPPASELPQPQ-------PQPQALHYALANAQQVQIHQIGEDGQVQVIPQGH 366
P+ P PP A+ PQPQ PQPQA ++ + Q P
Sbjct: 35 PAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGAP--- 91
Query: 367 LHIAQVPQGEQVQITQDSEGNLQIHHV---GQDGQLLEATRIPCLLAPSVFKASSGQVLQ 423
P +Q + SEG ++ G T +P + Q +Q
Sbjct: 92 ---TPSPAPQQYIVVTVSEGAMRASETVSEASPGSTASQTGVPTQVV---------QQVQ 139
Query: 424 GAQLIAVASSDPAAAGVDGSPLQGSDIQV-------QYVQLAPVSDHTAGAQTAEALQPT 476
G Q + + A SPLQ ++IQV Q + + + + G Q + + T
Sbjct: 140 GTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQRLVVQSAAPGSKGGQVSLTVHGT 199
Query: 477 LQPEMQLEHGAIQ 489
Q E +Q
Sbjct: 200 QQVHSPPEQSPVQ 212
>gi|21618342 signal transducer and activator of transcription 5A
[Homo sapiens]
Length = 794
Score = 30.8 bits (68), Expect = 2.9
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 288 WRRKQRGQSLAVKS----FSRRTPNSSSYCPSEPMMSTPPPASELPQPQPQPQALHYALA 343
W + Q+ Q A++ + + P + ++ + S P A +L PQ + QA
Sbjct: 4 WIQAQQLQGDALRQMQVLYGQHFPIEVRHYLAQWIESQPWDAIDLDNPQDRAQATQLLEG 63
Query: 344 NAQQVQI---HQIGEDGQVQVIPQGH 366
Q++Q HQ+GEDG + I GH
Sbjct: 64 LVQELQKKAEHQVGEDGFLLKIKLGH 89
>gi|4758472 G protein pathway suppressor 2 [Homo sapiens]
Length = 327
Score = 30.8 bits (68), Expect = 2.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 307 PNSSSYCPSEPMM--STPPPASELPQPQPQPQALH 339
P +Y PS+ + S P L QPQPQP A+H
Sbjct: 199 PTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVH 233
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,150,067
Number of Sequences: 37866
Number of extensions: 1002021
Number of successful extensions: 5181
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 4897
Number of HSP's gapped (non-prelim): 291
length of query: 491
length of database: 18,247,518
effective HSP length: 106
effective length of query: 385
effective length of database: 14,233,722
effective search space: 5479982970
effective search space used: 5479982970
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.