Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 109637795

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|109637795 E2F transcription factor 6 [Homo sapiens]
         (281 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|109637795 E2F transcription factor 6 [Homo sapiens]                553   e-158
gi|4758226 E2F transcription factor 2 [Homo sapiens]                  188   5e-48
gi|4503433 E2F transcription factor 3 [Homo sapiens]                  187   1e-47
gi|12669911 E2F transcription factor 1 [Homo sapiens]                 160   2e-39
gi|134142809 E2F transcription factor 5 isoform 2 [Homo sapiens]      125   3e-29
gi|134142811 E2F transcription factor 5 isoform 1 [Homo sapiens]      125   3e-29
gi|12669915 E2F transcription factor 4 [Homo sapiens]                 122   4e-28
gi|145580626 E2F transcription factor 7 [Homo sapiens]                 54   1e-07
gi|134142813 E2F transcription factor 5 isoform 3 [Homo sapiens]       49   6e-06
gi|38505226 E2F family member 8 [Homo sapiens]                         47   1e-05
gi|6005900 transcription factor Dp-1 [Homo sapiens]                    33   0.28 
gi|5454112 transcription factor Dp-2 (E2F dimerization partner 2...    32   0.48 
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H...    32   0.62 
gi|189409125 transcription factor Dp family, member 3 [Homo sapi...    32   0.62 
gi|27477095 nuclear receptor binding SET domain protein 1 isofor...    32   0.62 
gi|19923586 nuclear receptor binding SET domain protein 1 isofor...    32   0.62 
gi|4502443 dystonin isoform 1e precursor [Homo sapiens]                32   0.62 
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun...    32   0.81 
gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit...    32   0.81 
gi|17975763 myelin transcription factor 1 [Homo sapiens]               32   0.81 
gi|69885084 p120E4F [Homo sapiens]                                     31   1.4  
gi|223278393 protein phosphatase 1, regulatory (inhibitor) subun...    30   1.8  
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)...    30   1.8  
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)...    30   1.8  
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)...    30   1.8  
gi|55743140 WW domain binding protein 5 [Homo sapiens]                 30   1.8  
gi|55743147 WW domain binding protein 5 [Homo sapiens]                 30   1.8  
gi|10047100 WW domain binding protein 5 [Homo sapiens]                 30   1.8  
gi|55743145 WW domain binding protein 5 [Homo sapiens]                 30   1.8  
gi|226497734 RNA binding motif protein 19 [Homo sapiens]               30   2.4  

>gi|109637795 E2F transcription factor 6 [Homo sapiens]
          Length = 281

 Score =  553 bits (1425), Expect = e-158
 Identities = 281/281 (100%), Positives = 281/281 (100%)

Query: 1   MSQQRPARKLPSLLLDPTEETVRRRCRDPINVEGLLPSKIRINLEDNVQYVSMRKALKVK 60
           MSQQRPARKLPSLLLDPTEETVRRRCRDPINVEGLLPSKIRINLEDNVQYVSMRKALKVK
Sbjct: 1   MSQQRPARKLPSLLLDPTEETVRRRCRDPINVEGLLPSKIRINLEDNVQYVSMRKALKVK 60

Query: 61  RPRFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIDLVEKKS 120
           RPRFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIDLVEKKS
Sbjct: 61  RPRFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIDLVEKKS 120

Query: 121 KNHIRWIGSDLSNFGAVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKENERL 180
           KNHIRWIGSDLSNFGAVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKENERL
Sbjct: 121 KNHIRWIGSDLSNFGAVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKENERL 180

Query: 181 AYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPREDSITVHIRSTNGPIDVYLCEVEQ 240
           AYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPREDSITVHIRSTNGPIDVYLCEVEQ
Sbjct: 181 AYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPREDSITVHIRSTNGPIDVYLCEVEQ 240

Query: 241 GQTSNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLEVSN 281
           GQTSNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLEVSN
Sbjct: 241 GQTSNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLEVSN 281


>gi|4758226 E2F transcription factor 2 [Homo sapiens]
          Length = 437

 Score =  188 bits (477), Expect = 5e-48
 Identities = 96/215 (44%), Positives = 143/215 (66%), Gaps = 1/215 (0%)

Query: 60  KRPRFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIDLVEKK 119
           ++ R+D SL  LT+KF+ L+  +  G+LDLN  A  L V+KRR+YDITNVL+GI L+ KK
Sbjct: 126 EKTRYDTSLGLLTKKFIYLLSESEDGVLDLNWAAEVLDVQKRRIYDITNVLEGIQLIRKK 185

Query: 120 SKNHIRWIGSDLSNFGAVP-QQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKENE 178
           +KN+I+W+G  +      P +Q++L +EL +L   E ALD+LI+ C+     LT+DK N+
Sbjct: 186 AKNNIQWVGRGMFEDPTRPGKQQQLGQELKELMNTEQALDQLIQSCSLSFKHLTEDKANK 245

Query: 179 RLAYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPREDSITVHIRSTNGPIDVYLCEV 238
           RLAYVTYQDI ++  F EQ VIAVKAP +TRL+VP   ED++ ++++ST GPI+VYLC  
Sbjct: 246 RLAYVTYQDIRAVGNFKEQTVIAVKAPPQTRLEVPDRTEDNLQIYLKSTQGPIEVYLCPE 305

Query: 239 EQGQTSNKRSEGVGTSSSESTHPEGPEEEENPQQS 273
           E  +  +   E + ++S+    P+  +   +   S
Sbjct: 306 EVQEPDSPSEEPLPSTSTLCPSPDSAQPSSSTDPS 340


>gi|4503433 E2F transcription factor 3 [Homo sapiens]
          Length = 465

 Score =  187 bits (474), Expect = 1e-47
 Identities = 97/181 (53%), Positives = 130/181 (71%), Gaps = 2/181 (1%)

Query: 60  KRPRFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIDLVEKK 119
           ++ R+D SL  LT+KF+ L+  +P G+LDLNK A  L V+KRR+YDITNVL+GI L++KK
Sbjct: 175 EKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKK 234

Query: 120 SKNHIRWIGSDLS-NFGAVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKENE 178
           SKN+++W+G  LS + G + Q + L +E+++LS  E  LDELI+ C   L  LT+D EN+
Sbjct: 235 SKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQ 294

Query: 179 RLAYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPREDSITVHIRSTNGPIDVYLCEV 238
           RLAYVTYQDI  I    +Q VI VKAP ETRL+VP   E S+ +H+ ST GPI+VYLC  
Sbjct: 295 RLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDSIE-SLQIHLASTQGPIEVYLCPE 353

Query: 239 E 239
           E
Sbjct: 354 E 354


>gi|12669911 E2F transcription factor 1 [Homo sapiens]
          Length = 437

 Score =  160 bits (404), Expect = 2e-39
 Identities = 104/295 (35%), Positives = 155/295 (52%), Gaps = 28/295 (9%)

Query: 11  PSLLLDPTEETVRRRCRDPINVEGLLPSKIRINLEDNVQYVS----------MRKALKVK 60
           P LLL  T +  R     P    G  P K R++LE + QY++                VK
Sbjct: 61  PDLLLFATPQAPRPTPSAPRPALGRPPVKRRLDLETDHQYLAESSGPARGRGRHPGKGVK 120

Query: 61  RP----RFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIDLV 116
            P    R++ SL   T++F++L+  +  G++DLN  A  L V+KRR+YDITNVL+GI L+
Sbjct: 121 SPGEKSRYETSLNLTTKRFLELLSHSADGVVDLNWAAEVLKVQKRRIYDITNVLEGIQLI 180

Query: 117 EKKSKNHIRWIGSDLSNFGAVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKE 176
            KKSKNHI+W+GS  +  G   + + L ++L  L   E  LD L+  C  QL  L++D +
Sbjct: 181 AKKSKNHIQWLGSH-TTVGVGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTD 239

Query: 177 NERLAYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPREDSITVHIRSTNGPIDVYLC 236
           ++RLAYVT QD+ SI    EQ+V+ +KAP ET+L       ++  + ++S  GPIDV+LC
Sbjct: 240 SQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQA-VDSSENFQISLKSKQGPIDVFLC 298

Query: 237 EVE------------QGQTSNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLEV 279
             E            Q  TS + +    +++  S  P  P        S+ LL +
Sbjct: 299 PEETVGGISPGKTPSQEVTSEEENRATDSATIVSPPPSSPPSSLTTDPSQSLLSL 353


>gi|134142809 E2F transcription factor 5 isoform 2 [Homo sapiens]
          Length = 345

 Score =  125 bits (315), Expect = 3e-29
 Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 22/226 (9%)

Query: 63  RFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVR-KRRVYDITNVLDGIDLVEKKSK 121
           R + SL  LT KF+ L++ A  G+LDL   A  L VR KRR+YDITNVL+GIDL+EKKSK
Sbjct: 50  RHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSK 109

Query: 122 NHIRW--IGSDLSNFGAVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKENER 179
           N I+W  +G+  +    + + + L+ E+ DL   E  LD+      Q +  + DD  N R
Sbjct: 110 NSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNR 169

Query: 180 LAYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPR-----EDSITVHIRSTNGPIDVY 234
            +YVT++DI     F+   ++A++AP+ T+L+VP P      +    ++++S +GPI V 
Sbjct: 170 FSYVTHEDI--CNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVL 227

Query: 235 LCEVEQGQTSNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLEVS 280
           L         NK S    +SS     P  P ++     S+ L  V+
Sbjct: 228 LI--------NKES----SSSKPVVFPVPPPDDLTQPSSQSLTPVT 261


>gi|134142811 E2F transcription factor 5 isoform 1 [Homo sapiens]
          Length = 346

 Score =  125 bits (315), Expect = 3e-29
 Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 22/226 (9%)

Query: 63  RFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVR-KRRVYDITNVLDGIDLVEKKSK 121
           R + SL  LT KF+ L++ A  G+LDL   A  L VR KRR+YDITNVL+GIDL+EKKSK
Sbjct: 50  RHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSK 109

Query: 122 NHIRW--IGSDLSNFGAVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKENER 179
           N I+W  +G+  +    + + + L+ E+ DL   E  LD+      Q +  + DD  N R
Sbjct: 110 NSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNR 169

Query: 180 LAYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPR-----EDSITVHIRSTNGPIDVY 234
            +YVT++DI     F+   ++A++AP+ T+L+VP P      +    ++++S +GPI V 
Sbjct: 170 FSYVTHEDI--CNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVL 227

Query: 235 LCEVEQGQTSNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLEVS 280
           L         NK S    +SS     P  P ++     S+ L  V+
Sbjct: 228 LI--------NKES----SSSKPVVFPVPPPDDLTQPSSQSLTPVT 261


>gi|12669915 E2F transcription factor 4 [Homo sapiens]
          Length = 413

 Score =  122 bits (306), Expect = 4e-28
 Identities = 73/184 (39%), Positives = 109/184 (59%), Gaps = 9/184 (4%)

Query: 63  RFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVR-KRRVYDITNVLDGIDLVEKKSK 121
           R + SL  LT KF+ L++ A  G+LDL   A  L VR KRR+YDITNVL+GI L+EKKSK
Sbjct: 17  RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSK 76

Query: 122 NHIRW--IGSDLSNFGAVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKENER 179
           N I+W  +G   +      +  +L+ E+ +L   E  LD+      Q +  +T+D +N  
Sbjct: 77  NSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKVWVQQSIRNVTEDVQNSC 136

Query: 180 LAYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPR----EDSITVHIRSTNGPIDVYL 235
           LAYVT++DI   + F    ++A++AP+ T L+VP P     +    +H++S +GPI+V L
Sbjct: 137 LAYVTHEDI--CRCFAGDTLLAIRAPSGTSLEVPIPEGLNGQKKYQIHLKSVSGPIEVLL 194

Query: 236 CEVE 239
              E
Sbjct: 195 VNKE 198


>gi|145580626 E2F transcription factor 7 [Homo sapiens]
          Length = 911

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)

Query: 58  KVKRPRFDVSLVYLTRKFMDLVRSAPGGI----LDLNKVATKLGVRKRRVYDITNVLDGI 113
           K +  R   SL  L +KF+    S P       + L++VA  LGV +RR+YDI NVL+ +
Sbjct: 137 KQRPSRKQKSLGLLCQKFLARYPSYPLSTEKTTISLDEVAVSLGVERRRIYDIVNVLESL 196

Query: 114 DLVEKKSKNHIRWIG-----SDLSNFGAVPQQKKLQEELSDLSAME-DALD 158
            LV + +KN   W G       L N   + +++K +E+++ L   E D +D
Sbjct: 197 HLVSRVAKNQYGWHGRHSLPKTLRNLQRLGEEQKYEEQMAYLQQKELDLID 247



 Score = 33.5 bits (75), Expect = 0.21
 Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 32/151 (21%)

Query: 63  RFDVSLVYLTRKFMDLVRSAPGGILDLNKVA-------------TKLGVRKRRVYDITNV 109
           R D SL  +++KF+ L   +   I+ L+  A             +K   + RR+YDI NV
Sbjct: 282 RKDKSLRIMSQKFVMLFLVSKTKIVTLDVAAKILIEESQDAPDHSKFKTKVRRLYDIANV 341

Query: 110 LDGIDLV-------EKKSKNHIRWIGS-DLSNFGAVPQQKKLQEELSDLSAMEDALDELI 161
           L  + L+       E+  K   +WIG  D S+           EEL D+SA    L EL 
Sbjct: 342 LTSLALIKKVHVTEERGRKPAFKWIGPVDFSS---------SDEELVDVSA--SVLPELK 390

Query: 162 KDCAQQLFELTDDKENERLAYVTYQDIHSIQ 192
           ++   Q+      K     ++ T Q    IQ
Sbjct: 391 RETYGQIQVCAKQKLARHGSFNTVQASERIQ 421


>gi|134142813 E2F transcription factor 5 isoform 3 [Homo sapiens]
          Length = 185

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 19/113 (16%)

Query: 173 DDKENERLAYVTYQDIHSIQAFHEQIVIAVKAPAETRLDVPAPR-----EDSITVHIRST 227
           DD  N R +YVT++DI     F+   ++A++AP+ T+L+VP P      +    ++++S 
Sbjct: 2   DDSINNRFSYVTHEDI--CNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSH 59

Query: 228 NGPIDVYLCEVEQGQTSNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLEVS 280
           +GPI V L         NK S    +SS     P  P ++     S+ L  V+
Sbjct: 60  SGPIHVLLI--------NKES----SSSKPVVFPVPPPDDLTQPSSQSLTPVT 100


>gi|38505226 E2F family member 8 [Homo sapiens]
          Length = 867

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 58  KVKRPRFDVSLVYLTRKFMDLVRSAPGGILD----LNKVATKLGVRKRRVYDITNVLDGI 113
           K +  R + SL  L  KF+    + P   ++    L++VA +L V +RR+YDI NVL+ +
Sbjct: 108 KSQPSRKEKSLGLLCHKFLARYPNYPNPAVNNDICLDEVAEELNVERRRIYDIVNVLESL 167

Query: 114 DLVEKKSKNHIRWIG-----SDLSNFGAVPQQKKLQEELSDLSAME 154
            +V + +KN   W G       L    ++ ++ K  E++  +   E
Sbjct: 168 HMVSRLAKNRYTWHGRHNLNKTLGTLKSIGEENKYAEQIMMIKKKE 213



 Score = 37.7 bits (86), Expect = 0.011
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 28/170 (16%)

Query: 55  KALKVKRPRFDVSLVYLTRKFMDLVRSAPGGI-------LDLNKVATKLGVRKRRVYDIT 107
           K+L+V   +F +  +  T + + L  +A   I       LD +K  TK+    RR+YDI 
Sbjct: 264 KSLRVMSQKFVMLFLVSTPQIVSLEVAAKILIGEDHVEDLDKSKFKTKI----RRLYDIA 319

Query: 108 NVLDGIDLV-------EKKSKNHIRWIGSDLS--NFGAVPQQKKLQEELSDLSAMEDALD 158
           NVL  +DL+       E+  K   +W G ++S    G+ P    +    SDL     + +
Sbjct: 320 NVLSSLDLIKKVHVTEERGRKPAFKWTGPEISPNTSGSSP---VIHFTPSDLEVRRSSKE 376

Query: 159 ELIKDCAQQLFELTDDKENERLAYVTYQDIHSIQAFHEQIVIAVKAPAET 208
               +CA+ LF  T  K N        + + SI++   +I  A  +P +T
Sbjct: 377 ----NCAKNLFS-TRGKPNFTRHPSLIKLVKSIESDRRKINSAPSSPIKT 421


>gi|6005900 transcription factor Dp-1 [Homo sapiens]
          Length = 410

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 100 KRRVYDITNVLDGIDLVEKKSKNHIRWIGSDLSNFGAVPQ-QKKLQEELSDLSAMEDALD 158
           +RRVYD  NVL  ++++ K+ K  I+WIG   ++       + + Q  L  +   +  L 
Sbjct: 166 RRRVYDALNVLMAMNIISKE-KKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQ 224

Query: 159 ELI 161
           ELI
Sbjct: 225 ELI 227


>gi|5454112 transcription factor Dp-2 (E2F dimerization partner 2)
           [Homo sapiens]
          Length = 386

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 11/72 (15%)

Query: 100 KRRVYDITNVLDGIDLVEKKSKNHIRWIGSDLSNFGAVPQQKKLQEELSDLSAMEDALDE 159
           +RRVYD  NVL  ++++ K+ K  I+WIG   ++           +E  +L   +    E
Sbjct: 121 RRRVYDALNVLMAMNIISKE-KKEIKWIGLPTNS----------AQECQNLEIEKQRRIE 169

Query: 160 LIKDCAQQLFEL 171
            IK    QL EL
Sbjct: 170 RIKQKRAQLQEL 181


>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
            sapiens]
          Length = 1940

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 76   MDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIDLVEKKSKNHIRWIGSDLSNFG 135
            +D +++    +  LNK  +KL   +++V D+ + L+    +    + + R +  DL    
Sbjct: 1008 LDDLQAEEDKVNSLNKTKSKL---EQQVEDLESSLEQEKKLRVDLERNKRKLEGDL---- 1060

Query: 136  AVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKENERLAYVTYQ-DIHSIQAF 194
                 K  QE + DL   +  LDE +K    +  +L    E+E+   + +Q  I  +QA 
Sbjct: 1061 -----KLAQESILDLENDKQQLDERLKKKDFEYCQLQSKVEDEQTLGLQFQKKIKELQAR 1115

Query: 195  HEQIVIAVKAPAETRLDVPAPRED 218
             E++   ++A   TR      R D
Sbjct: 1116 IEELEEEIEAERATRAKTEKQRSD 1139


>gi|189409125 transcription factor Dp family, member 3 [Homo
           sapiens]
          Length = 405

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 12/73 (16%)

Query: 100 KRRVYDITNVLDGIDLVEKKSKNHIRWIGSDLSNFG-----AVPQQKKL------QEELS 148
           KRR YD  NVL  ++++ ++ K  I+WIG   ++        V +QK+L      Q EL 
Sbjct: 161 KRRTYDALNVLMAMNIISREKKK-IKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSELQ 219

Query: 149 DLSAMEDALDELI 161
            L   + A   L+
Sbjct: 220 QLILQQIAFKNLV 232


>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
           [Homo sapiens]
          Length = 2427

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 17/51 (33%), Positives = 24/51 (47%)

Query: 226 STNGPIDVYLCEVEQGQTSNKRSEGVGTSSSESTHPEGPEEEENPQQSEEL 276
           STN P+ V    V  G T N   +G GT +S +  P G +   + + S  L
Sbjct: 676 STNSPVGVSKVLVSGGSTHNSEKKGDGTQNSANPSPSGGDSALSGELSASL 726


>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
           [Homo sapiens]
          Length = 2696

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 17/51 (33%), Positives = 24/51 (47%)

Query: 226 STNGPIDVYLCEVEQGQTSNKRSEGVGTSSSESTHPEGPEEEENPQQSEEL 276
           STN P+ V    V  G T N   +G GT +S +  P G +   + + S  L
Sbjct: 945 STNSPVGVSKVLVSGGSTHNSEKKGDGTQNSANPSPSGGDSALSGELSASL 995


>gi|4502443 dystonin isoform 1e precursor [Homo sapiens]
          Length = 2649

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 139  QQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKENERLAYVTYQDIHSIQAF---H 195
            ++ KLQ E+  ++      ++ I+    Q+    D+KE ERL     +  H  + F   H
Sbjct: 1479 EKGKLQREVDRITRAHAVAEKNIQHLNSQIHSFRDEKELERLQICQRKSDHLKEQFEKSH 1538

Query: 196  EQIVIAVKAPAE 207
            EQ++  +KA  E
Sbjct: 1539 EQLLQNIKAEKE 1550


>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
           12A isoform a [Homo sapiens]
          Length = 1030

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 23/170 (13%)

Query: 114 DLVEKKSKNHIRWIGSDLSNFGAVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTD 173
           D  +K+++   RWIGS+      V +++K + +  D +    A      D   +L     
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRQKTKVKFDDGAVFLAACSSGDTDEVLKLL---- 60

Query: 174 DKENERLAYVTYQDIHSIQAFHEQI----VIAVKAPAETRLDVPAP-REDSITVHIRSTN 228
                R A + Y ++  + A H+      V  VK   E   ++  P  E  I +H  ++ 
Sbjct: 61  ----HRGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC 116

Query: 229 GPIDVYLCEVEQGQTSNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLE 278
           G +D+    + QG         VG  +SE   P    EEE     EELL+
Sbjct: 117 GYLDIAEFLIGQG-------AHVGAVNSEGDTPLDIAEEE---AMEELLQ 156


>gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit
           12A isoform a [Homo sapiens]
          Length = 1030

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 23/170 (13%)

Query: 114 DLVEKKSKNHIRWIGSDLSNFGAVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTD 173
           D  +K+++   RWIGS+      V +++K + +  D +    A      D   +L     
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRQKTKVKFDDGAVFLAACSSGDTDEVLKLL---- 60

Query: 174 DKENERLAYVTYQDIHSIQAFHEQI----VIAVKAPAETRLDVPAP-REDSITVHIRSTN 228
                R A + Y ++  + A H+      V  VK   E   ++  P  E  I +H  ++ 
Sbjct: 61  ----HRGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC 116

Query: 229 GPIDVYLCEVEQGQTSNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLE 278
           G +D+    + QG         VG  +SE   P    EEE     EELL+
Sbjct: 117 GYLDIAEFLIGQG-------AHVGAVNSEGDTPLDIAEEE---AMEELLQ 156


>gi|17975763 myelin transcription factor 1 [Homo sapiens]
          Length = 1121

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 15/150 (10%)

Query: 127 IGSDLSNFGAVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKENERLAYVTYQ 186
           I + L N G + ++  ++E+L   +     +  L+++ A    E    +E E+  ++  +
Sbjct: 164 IATSLLNLGQIAEETLVEEDLGQAAKPGPGIVHLLQEAA----EGAASEEGEKGLFIQPE 219

Query: 187 DIHSIQAFHEQIVIAVKAPAETRLDV-PAPREDSITVHIRSTNGPIDVYLCEVEQGQTSN 245
           D   +          V+   E   D+ P   ED+ +       G +     + E+ +   
Sbjct: 220 DAEEV----------VEVTTERSQDLCPQSLEDAASEESSKQKGILSHEEEDEEEEEEEE 269

Query: 246 KRSEGVGTSSSESTHPEGPEEEENPQQSEE 275
           +  E       E    E  EEEE  ++ EE
Sbjct: 270 EEEEDEEEEEEEEEEEEEEEEEEEEEEEEE 299


>gi|69885084 p120E4F [Homo sapiens]
          Length = 784

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 20/70 (28%), Positives = 31/70 (44%)

Query: 153 MEDALDELIKDCAQQLFELTDDKENERLAYVTYQDIHSIQAFHEQIVIAVKAPAETRLDV 212
           +E   D+     A ++ E T  + +  +  V  Q +H   A H+ IV  V    ET L  
Sbjct: 644 IEATADDAETSEATEIIEGTQTEVDSHIMKVVQQIVHQASAGHQIIVQNVTMDEETALGP 703

Query: 213 PAPREDSITV 222
            A   D+IT+
Sbjct: 704 EAAAADTITI 713


>gi|223278393 protein phosphatase 1, regulatory (inhibitor) subunit
           3G [Homo sapiens]
          Length = 358

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 205 PAETRLDVPAPREDSITVHIRSTNGPIDVYLCEVEQGQTSNKRSEGVGTSSSESTHPEGP 264
           P   RL + AP          +   P  V  C V+ G      SE     +     P  P
Sbjct: 3   PIGARLSLEAPGPAPFREAPPAEELPAPVVPC-VQGGGDGGGASETPSPDAQLGDRPLSP 61

Query: 265 EEEENPQQSEELLE 278
           +EE  PQ+ EELLE
Sbjct: 62  KEEAAPQEQEELLE 75


>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
            [Homo sapiens]
          Length = 2004

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 13/93 (13%)

Query: 196  EQIVIAVKAPAETRL----DVPAPREDSITVHIRSTNGPIDVYLCEVEQGQTSNKRSEGV 251
            E IV   KA  + ++    +   P+ED      R     +     E E+G+  +  S  V
Sbjct: 1190 EPIVSIPKAGRKPKIQESEETVEPKEDMPLPEERKEEEEMQAEAEEAEEGEEEDAASSEV 1249

Query: 252  GTSS---------SESTHPEGPEEEENPQQSEE 275
              +S         +E+  PE  EEEE P+ SEE
Sbjct: 1250 PAASPADSSNSPETETKEPEVEEEEEKPRVSEE 1282


>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
            [Homo sapiens]
          Length = 2004

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 13/93 (13%)

Query: 196  EQIVIAVKAPAETRL----DVPAPREDSITVHIRSTNGPIDVYLCEVEQGQTSNKRSEGV 251
            E IV   KA  + ++    +   P+ED      R     +     E E+G+  +  S  V
Sbjct: 1190 EPIVSIPKAGRKPKIQESEETVEPKEDMPLPEERKEEEEMQAEAEEAEEGEEEDAASSEV 1249

Query: 252  GTSS---------SESTHPEGPEEEENPQQSEE 275
              +S         +E+  PE  EEEE P+ SEE
Sbjct: 1250 PAASPADSSNSPETETKEPEVEEEEEKPRVSEE 1282


>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
            [Homo sapiens]
          Length = 2004

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 13/93 (13%)

Query: 196  EQIVIAVKAPAETRL----DVPAPREDSITVHIRSTNGPIDVYLCEVEQGQTSNKRSEGV 251
            E IV   KA  + ++    +   P+ED      R     +     E E+G+  +  S  V
Sbjct: 1190 EPIVSIPKAGRKPKIQESEETVEPKEDMPLPEERKEEEEMQAEAEEAEEGEEEDAASSEV 1249

Query: 252  GTSS---------SESTHPEGPEEEENPQQSEE 275
              +S         +E+  PE  EEEE P+ SEE
Sbjct: 1250 PAASPADSSNSPETETKEPEVEEEEEKPRVSEE 1282


>gi|55743140 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 244 SNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLE 278
           S ++ EG   + SE  H E P+ EE P++ E+L E
Sbjct: 3   SCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEE 37


>gi|55743147 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 244 SNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLE 278
           S ++ EG   + SE  H E P+ EE P++ E+L E
Sbjct: 3   SCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEE 37


>gi|10047100 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 244 SNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLE 278
           S ++ EG   + SE  H E P+ EE P++ E+L E
Sbjct: 3   SCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEE 37


>gi|55743145 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 244 SNKRSEGVGTSSSESTHPEGPEEEENPQQSEELLE 278
           S ++ EG   + SE  H E P+ EE P++ E+L E
Sbjct: 3   SCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEE 37


>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 31/169 (18%)

Query: 96  LGVRKRRVYDITNVLDGIDLVEKKSKN-----------------HIRWIGSDLSNFGAVP 138
           L V +RR    T   DG+D    K K+                      G DL    ++ 
Sbjct: 137 LSVHQRRAQAATWANDGLDAEPSKGKSKPASDYLNFDSDSGQESEEEGAGEDLEEEASLE 196

Query: 139 QQKKLQEELSDLSAMEDAL----------DELIKDCAQQLFELTDDKENERLAYVTYQDI 188
            +  +Q+ELSD+  ++  +          +E  +D A    E ++ +E +  A    Q+ 
Sbjct: 197 PKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCDEGSEAEEEDSSATPVLQER 256

Query: 189 HSIQAFHEQ-IVIAVKAPAETRLDV--PAPREDSITVH-IRSTNGPIDV 233
            S  A  EQ +    K P E R +   PA +++  T H ++    P +V
Sbjct: 257 DSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLRGAPFNV 305


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,602,194
Number of Sequences: 37866
Number of extensions: 462918
Number of successful extensions: 2045
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1971
Number of HSP's gapped (non-prelim): 101
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press