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Search of human proteins with 109452617
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109452617 chromosome 19 open reading frame 34 [Homo sapiens]
(148 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109452617 chromosome 19 open reading frame 34 [Homo sapiens] 303 5e-83
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 41 3e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.002
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 37 0.006
gi|91208420 bassoon protein [Homo sapiens] 37 0.008
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 36 0.013
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 36 0.013
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 36 0.013
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 34 0.039
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 34 0.039
gi|13569901 TSC22 domain family, member 4 [Homo sapiens] 34 0.051
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 33 0.067
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 33 0.087
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 33 0.087
gi|166999613 FBJ murine osteosarcoma viral oncogene homolog B is... 32 0.15
gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa... 32 0.15
gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo sa... 32 0.15
gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo sa... 32 0.15
gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo sa... 32 0.15
gi|33695090 prostate tumor overexpressed 1 [Homo sapiens] 32 0.15
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 32 0.19
gi|122937211 KIAA0368 protein [Homo sapiens] 31 0.33
gi|124430752 kinesin family member 26B [Homo sapiens] 31 0.33
gi|239757467 PREDICTED: hypothetical protein [Homo sapiens] 31 0.43
gi|239751993 PREDICTED: hypothetical protein [Homo sapiens] 31 0.43
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 31 0.43
gi|239746476 PREDICTED: hypothetical protein [Homo sapiens] 31 0.43
gi|4507917 WEE1 tyrosine kinase isoform 1 [Homo sapiens] 31 0.43
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 31 0.43
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 31 0.43
>gi|109452617 chromosome 19 open reading frame 34 [Homo sapiens]
Length = 148
Score = 303 bits (775), Expect = 5e-83
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MGRAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISK 60
MGRAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISK
Sbjct: 1 MGRAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISK 60
Query: 61 GKSPDYANGGKAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSLALPPRLECLFPS 120
GKSPDYANGGKAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSLALPPRLECLFPS
Sbjct: 61 GKSPDYANGGKAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSLALPPRLECLFPS 120
Query: 121 SCGSRRATSRPGFPPLEGSHLGCQLLPL 148
SCGSRRATSRPGFPPLEGSHLGCQLLPL
Sbjct: 121 SCGSRRATSRPGFPPLEGSHLGCQLLPL 148
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 41.2 bits (95), Expect = 3e-04
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 15/140 (10%)
Query: 3 RAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISKGK 62
R RS + TRPR RR R + SPRR R PR +P+ P ++
Sbjct: 287 RTRSRSPSHTRPR------RRHRSRSRSYSPRR--RPSPRRRPSPRRRTPPRRMP----- 333
Query: 63 SPDYANGGKAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSLALPPRLECLFPSSC 122
P ++ + R + + S +S+S+ R P + KR+ + P + L PS+
Sbjct: 334 PPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSAS 393
Query: 123 GSRR--ATSRPGFPPLEGSH 140
RR S P PP + H
Sbjct: 394 PPRRRHRPSPPATPPPKTRH 413
Score = 27.7 bits (60), Expect = 3.7
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 3 RAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVA----- 57
R RS + + T + P P +K +P +P+ + A S +
Sbjct: 191 RERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKP 250
Query: 58 --ISKGKSPDYANGGKAAMDSRA----SDAINKSKVDTSASNPSQRRPSRLRGKRSLALP 111
I + K P K + S + +KS+ T + +PS RP R RS +
Sbjct: 251 EPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYS 310
Query: 112 PRLECLFPSSCGSRRATSRPGFPP 135
PR PS RR + R PP
Sbjct: 311 PRRR---PSP--RRRPSPRRRTPP 329
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 38.5 bits (88), Expect = 0.002
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 5/149 (3%)
Query: 3 RAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRR-PRGQPASENAAEPSQVAISKG 61
R P + +R R + IT RR R P + RR R P + S + P S+
Sbjct: 1961 RTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRS 2020
Query: 62 KSPDYANGGKAAMDSRASDAINKSKVDTSASNPSQRR-PSRLRGKRSLAL-PPRLECLFP 119
++P + ++S+ + S+ R P RGKRSL PP +
Sbjct: 2021 RTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRR-- 2078
Query: 120 SSCGSRRATSRPGFPPLEGSHLGCQLLPL 148
S+ GS SR PP +H G + P+
Sbjct: 2079 SASGSSSDRSRSATPPATRNHSGSRTPPV 2107
Score = 32.7 bits (73), Expect = 0.11
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 3 RAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISKGK 62
RA P + +R R +I+ RR R P S RR R + S + A P S+ +
Sbjct: 1867 RASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSR 1926
Query: 63 SPDYANGGKAAMDSRASDAINKSKVDTSASNPSQRRPSRLR 103
+P + SR +S+ S + P RR SR R
Sbjct: 1927 TPPVT---RRRSRSRTPTTRRRSR---SRTPPVTRRRSRSR 1961
Score = 31.2 bits (69), Expect = 0.33
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 6 PRSTADTRPRAT--VITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISKGKS 63
PRS + + P +T +R R + + ++ R P GQ + +++ ++ + S
Sbjct: 1495 PRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQ--ELDVKPSAS 1552
Query: 64 PDYANGGKAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRS 107
P + ++ DS+A + S S+P SRL +RS
Sbjct: 1553 PQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRS 1596
Score = 30.4 bits (67), Expect = 0.57
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 17/145 (11%)
Query: 2 GRAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPA----SENAAEPSQVA 57
G +G S + R ++ ++RR R + T P R R R PA S + A P+
Sbjct: 1816 GGSGYHSRSPARQESSRTSSRRRRGRSR-TPPTSRKRSRSRTSPAPWKRSRSRASPATHR 1874
Query: 58 ISKGKSPDYANGGKAAMDSRASDAINKSKVDT------SASNPSQRRPSRLRGKRSLALP 111
S+ ++P + + S S ++S+ S ++P RR SR R P
Sbjct: 1875 RSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSR------TP 1928
Query: 112 PRLECLFPSSCGSRRATSRPGFPPL 136
P S + R SR PP+
Sbjct: 1929 PVTRRRSRSRTPTTRRRSRSRTPPV 1953
Score = 28.5 bits (62), Expect = 2.1
Identities = 38/133 (28%), Positives = 52/133 (39%), Gaps = 12/133 (9%)
Query: 14 PRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISKGKSPDYANGGKAA 73
PRA + P P K +PR L RR G +S+ + + S SP++ + A
Sbjct: 1612 PRAQSGSDSSPEP--KAPAPRALPRRSRSG-SSSKGRGPSPEGSSSTESSPEHPPKSRTA 1668
Query: 74 MDSRASDAINKSKVDT------SASNPSQRRPSRL-RGKRSLALPPRLECLFPSSCGSRR 126
S K+K T S S+P R +RL R RS + P P RR
Sbjct: 1669 RRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPR--HRR 1726
Query: 127 ATSRPGFPPLEGS 139
+ S P E S
Sbjct: 1727 SPSVSSPEPAEKS 1739
Score = 28.1 bits (61), Expect = 2.8
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 45 PASENAAEPSQV-AISKGKSPDYANGGKAAMDSRASDAINKSKVDTSASNPSQRRPSRLR 103
PAS A +PS + A+ K ++ ++ S +S + + S +S S+ S S L
Sbjct: 2510 PASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLP 2569
Query: 104 GKRSLALPPRLECLFPSSCGSRRATSRPGFPP 135
+ +AL PS + + R G PP
Sbjct: 2570 VQPEVALK-----RVPSPTPAPKEAVREGRPP 2596
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 37.0 bits (84), Expect = 0.006
Identities = 38/144 (26%), Positives = 50/144 (34%), Gaps = 16/144 (11%)
Query: 5 GPRSTADTRPRATVITTRRPRPWQKP------TSPRRLHRRRPRGQPASENAAEPSQVAI 58
GP S D + A + RP+P P PRRL PR +P EP
Sbjct: 1155 GPGSGVDAK--AGWVDNTRPQPPPPPLPPPPEAQPRRLEPAPPRARPEVAPEGEPGAPDS 1212
Query: 59 SKGKSPDYANGGKAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSLALPPRLECLF 118
G + G R + + +D + + + SLALPP F
Sbjct: 1213 RAGGDTALSGDGDPPKPERKGPEMPRLFLDLGPPQGNSEQIKARLSRLSLALPPLTLTPF 1272
Query: 119 PSSCGSRRATSRPGFPPLEGSHLG 142
P G RR PP EG+ G
Sbjct: 1273 PGP-GPRR-------PPWEGADAG 1288
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 36.6 bits (83), Expect = 0.008
Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 37/174 (21%)
Query: 2 GRAGPRSTAD------TRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQ 55
GR R T + +P A + RP +P+S + ++ G P+S ++PS+
Sbjct: 3651 GRHSGRHTGEEPGRRAAKPHARDLGRHEARPHSQPSSAPAMPKKGQPGYPSSAEYSQPSR 3710
Query: 56 V------AISKGKSPDYANGGKAAMDSR-------------ASDAINKSKVDTSASNPS- 95
A K A+ G AA+ S+ A+ +S+ +S PS
Sbjct: 3711 ASSAYHHASDSKKGSRQAHSGPAALQSKAEPQAQPQLQGRQAAPGPQQSQSPSSRQIPSG 3770
Query: 96 --QRRPSRLRGKRSLALPPRLECLF---------PSSCGSRRATSRPGFPPLEG 138
R+P + ++ L L P + L P++ GS A S+P P G
Sbjct: 3771 AASRQPQTQQQQQGLGLQPPQQALTQARLQQQSQPTTRGSAPAASQPAGKPQPG 3824
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 35.8 bits (81), Expect = 0.013
Identities = 35/140 (25%), Positives = 47/140 (33%), Gaps = 5/140 (3%)
Query: 2 GRAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISKG 61
G P +R T + RP P +P P R+ + + EPS A +
Sbjct: 170 GTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTE-GPRKSVSSASEHSTTEPSPAARRRP 228
Query: 62 KSPDYANGGKAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSLALPPRLECLFPSS 121
A GG SR+ + + S PS R R S P L+ L P
Sbjct: 229 S----AGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ 284
Query: 122 CGSRRATSRPGFPPLEGSHL 141
R + P PL S L
Sbjct: 285 VTPPRKDAAPALGPLSSSPL 304
Score = 31.6 bits (70), Expect = 0.25
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 40 RPRGQPASENAAEPSQVAI-----SKGKSP--DYANG-GKAAMDSRASDAINKSKVDTSA 91
RP G P P+ + + + G+ P + A G G A + A A TS+
Sbjct: 28 RPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSS 87
Query: 92 SNPSQRRPSRLRGKRSLALPPRLECLFP-SSCGSRRATSRPG 132
NP+ R P+ RG+R A P + P SS G T+RPG
Sbjct: 88 RNPASRPPASGRGER--APPAKNTSPGPVSSPGRASGTTRPG 127
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 35.8 bits (81), Expect = 0.013
Identities = 35/140 (25%), Positives = 47/140 (33%), Gaps = 5/140 (3%)
Query: 2 GRAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISKG 61
G P +R T + RP P +P P R+ + + EPS A +
Sbjct: 170 GTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTE-GPRKSVSSASEHSTTEPSPAARRRP 228
Query: 62 KSPDYANGGKAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSLALPPRLECLFPSS 121
A GG SR+ + + S PS R R S P L+ L P
Sbjct: 229 S----AGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ 284
Query: 122 CGSRRATSRPGFPPLEGSHL 141
R + P PL S L
Sbjct: 285 VTPPRKDAAPALGPLSSSPL 304
Score = 31.6 bits (70), Expect = 0.25
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 40 RPRGQPASENAAEPSQVAI-----SKGKSP--DYANG-GKAAMDSRASDAINKSKVDTSA 91
RP G P P+ + + + G+ P + A G G A + A A TS+
Sbjct: 28 RPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSS 87
Query: 92 SNPSQRRPSRLRGKRSLALPPRLECLFP-SSCGSRRATSRPG 132
NP+ R P+ RG+R A P + P SS G T+RPG
Sbjct: 88 RNPASRPPASGRGER--APPAKNTSPGPVSSPGRASGTTRPG 127
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 35.8 bits (81), Expect = 0.013
Identities = 35/140 (25%), Positives = 47/140 (33%), Gaps = 5/140 (3%)
Query: 2 GRAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISKG 61
G P +R T + RP P +P P R+ + + EPS A +
Sbjct: 161 GTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTE-GPRKSVSSASEHSTTEPSPAARRRP 219
Query: 62 KSPDYANGGKAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSLALPPRLECLFPSS 121
A GG SR+ + + S PS R R S P L+ L P
Sbjct: 220 S----AGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ 275
Query: 122 CGSRRATSRPGFPPLEGSHL 141
R + P PL S L
Sbjct: 276 VTPPRKDAAPALGPLSSSPL 295
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 34.3 bits (77), Expect = 0.039
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 7 RSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISKGKSPDY 66
+ T+++R RA +++ + S R RRR + S++ S + +SP +
Sbjct: 1838 KRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKH 1897
Query: 67 ANGGKAAMDSRASDAINKSKVDTSASNPSQR----RPSRLRGKRSL 108
+ + R+S N+ V + PS+R PSR R RS+
Sbjct: 1898 RSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSV 1943
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 34.3 bits (77), Expect = 0.039
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 7 RSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISKGKSPDY 66
+ T+++R RA +++ + S R RRR + S++ S + +SP +
Sbjct: 1838 KRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKH 1897
Query: 67 ANGGKAAMDSRASDAINKSKVDTSASNPSQR----RPSRLRGKRSL 108
+ + R+S N+ V + PS+R PSR R RS+
Sbjct: 1898 RSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSV 1943
>gi|13569901 TSC22 domain family, member 4 [Homo sapiens]
Length = 395
Score = 33.9 bits (76), Expect = 0.051
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 9/125 (7%)
Query: 24 PRPWQKP--TSPRRLHRRRPRGQ-----PASENAAEPSQVAISKGKSPDYANGGKAAMDS 76
P W +P TSP R G P+ A +P A S + P G++A S
Sbjct: 148 PTSWLRPPPTSPGPQARSFTGGLGQLVVPSKAKAEKPPLSASSPQQRPPEPETGESAGTS 207
Query: 77 RASDAINKSKVDTSASNPSQRRPSRLRGKRSLALPPRLECLFPSSCGS-RRATSRPGFPP 135
RA+ + +V+ A R P L ++++ + R+E P G SRP P
Sbjct: 208 RAATPLPSLRVEAEAGGSGARTPP-LSRRKAVDMRLRMELGAPEEMGQVPPLDSRPSSPA 266
Query: 136 LEGSH 140
L +H
Sbjct: 267 LYFTH 271
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 33.5 bits (75), Expect = 0.067
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 21 TRRPRPWQKPTSPRRLHRRRPRGQP-----------ASENAAEPSQVAISKGKSPDYANG 69
T R RPW P R R GQP E A +Q + K D A G
Sbjct: 744 TDRARPWSPPAPGESRDRARGAGQPGPGSGSGAERAGPERRARDTQTRTRRDKLTDSARG 803
Query: 70 GKAAMDS--RASDAINKSKVDTSASNPSQRRPSRLR-GKRSLALP 111
G+A + + R + + ++ +R SR R G+ LP
Sbjct: 804 GRARLTAGRRVRRESGRRRAGATSQGAIRRAASRARKGESRRPLP 848
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 33.1 bits (74), Expect = 0.087
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 20 TTRRPRPWQKPTSPRRLHRRRP-RGQPASENAAE--PSQVAI-SKGKSPDYANGGKAAMD 75
T RRPRP +P PRR +P G+ + A P Q S+G + K +
Sbjct: 249 TARRPRPRPRPALPRRAREPQPGSGRRCRRDTAVRWPRQAPYSSRGHDLERPGRCKTGLW 308
Query: 76 SRASDAINKSKVDTSASNPSQRRPSRLRGKRSLALPP 112
++ ++ ++ + + R + +SLALPP
Sbjct: 309 GHSAHTSHRLRISPKSESAPSCRAAVFSATQSLALPP 345
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 33.1 bits (74), Expect = 0.087
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 4 AGPRSTADTRPRATVITTRRPR--PWQKPTSPRRLHRRRPRGQPASENAAEPSQVAIS-- 59
+G T PR V ++ R P P +P + RR+ R PAS + A P + S
Sbjct: 596 SGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPARRQSRRSPASPSPASPGPASPSPV 655
Query: 60 KGKSPDYANGGKAAMDSRASDAINKSKVDTSASNPSQRRPSRL 102
+P + G A + A +AI S V T + P Q RP L
Sbjct: 656 SLSNPAQVDLGAATAEGGAPEAI--SGVPTPPAIPPQPRPRSL 696
Score = 26.9 bits (58), Expect = 6.2
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 78 ASDAINKSKVDTSASNPSQRRPSRLRGKRSLALPPRLECLFPSSCGSRRATSRPGFPPLE 137
AS + +S +T+A R ++ +PP P GSR + P PP
Sbjct: 543 ASPKVTRSPPETAAPVEDMARRTKRPAPARPTMPP------PQVSGSRSSPPAPPLPPGS 596
Query: 138 GSHLGCQLLP 147
GS Q LP
Sbjct: 597 GSPGTPQALP 606
>gi|166999613 FBJ murine osteosarcoma viral oncogene homolog B
isoform 1 [Homo sapiens]
Length = 338
Score = 32.3 bits (72), Expect = 0.15
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 14 PRATVITTRRPRPWQ-KPTSPRRLHRRRPRGQPASENAAEPSQVAISKGKSPDYANGGKA 72
P T ITT + W +PT + + +GQP A++P V Y+ G +
Sbjct: 56 PTVTAITTSQDLQWLVQPTLISSM--AQSQGQPL---ASQPPVVDPYDMPGTSYSTPGMS 110
Query: 73 AMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSLALPPRLECLFPSSCGSRR 126
S + + S P RP+R R +R PR E L P RR
Sbjct: 111 GYSSGGASGSGGPSTSGTTSGPGPARPARARPRR-----PREETLTPEEEEKRR 159
>gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo
sapiens]
Length = 987
Score = 32.3 bits (72), Expect = 0.15
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 7 RSTADTRPRATVITTRRPRPWQK-PTSPRRLHRRRPRGQPASENAAEPSQVAISKGKSPD 65
+ T PR +T R R + P++PR+ P S N P++ + P
Sbjct: 20 KRTGIPAPREFSVTVSRERSVPRGPSNPRK-----SVSSPTSSNTPTPTKHLRTPSTKPK 74
Query: 66 YANGG--KAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSL 108
N G KAA++S+ + + ++K S N + + + KR+L
Sbjct: 75 QENEGGEKAALESQVRELLAEAKAKDSEINRLRSELKKYKEKRTL 119
>gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo
sapiens]
Length = 709
Score = 32.3 bits (72), Expect = 0.15
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 7 RSTADTRPRATVITTRRPRPWQK-PTSPRRLHRRRPRGQPASENAAEPSQVAISKGKSPD 65
+ T PR +T R R + P++PR+ P S N P++ + P
Sbjct: 20 KRTGIPAPREFSVTVSRERSVPRGPSNPRK-----SVSSPTSSNTPTPTKHLRTPSTKPK 74
Query: 66 YANGG--KAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSL 108
N G KAA++S+ + + ++K S N + + + KR+L
Sbjct: 75 QENEGGEKAALESQVRELLAEAKAKDSEINRLRSELKKYKEKRTL 119
>gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo
sapiens]
Length = 1068
Score = 32.3 bits (72), Expect = 0.15
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 7 RSTADTRPRATVITTRRPRPWQK-PTSPRRLHRRRPRGQPASENAAEPSQVAISKGKSPD 65
+ T PR +T R R + P++PR+ P S N P++ + P
Sbjct: 101 KRTGIPAPREFSVTVSRERSVPRGPSNPRK-----SVSSPTSSNTPTPTKHLRTPSTKPK 155
Query: 66 YANGG--KAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSL 108
N G KAA++S+ + + ++K S N + + + KR+L
Sbjct: 156 QENEGGEKAALESQVRELLAEAKAKDSEINRLRSELKKYKEKRTL 200
>gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo
sapiens]
Length = 790
Score = 32.3 bits (72), Expect = 0.15
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 7 RSTADTRPRATVITTRRPRPWQK-PTSPRRLHRRRPRGQPASENAAEPSQVAISKGKSPD 65
+ T PR +T R R + P++PR+ P S N P++ + P
Sbjct: 101 KRTGIPAPREFSVTVSRERSVPRGPSNPRK-----SVSSPTSSNTPTPTKHLRTPSTKPK 155
Query: 66 YANGG--KAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSL 108
N G KAA++S+ + + ++K S N + + + KR+L
Sbjct: 156 QENEGGEKAALESQVRELLAEAKAKDSEINRLRSELKKYKEKRTL 200
>gi|33695090 prostate tumor overexpressed 1 [Homo sapiens]
Length = 416
Score = 32.3 bits (72), Expect = 0.15
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 2 GRAGPRSTADTRPRATVITTRRPRPWQKPTSPR--RLHRRRPRGQPASENAAEPSQVAIS 59
G GP PR V+ R R W P SPR + R R R P E A +
Sbjct: 12 GAGGPLGGRGRPPRPLVVRAVRSRSW--PASPRGPQPPRIRARSAPPMEGARVFGALGPI 69
Query: 60 KGKSPDYANGGKAAMDSRASDAI 82
SP GG A + R S+ +
Sbjct: 70 GPSSPGLTLGGLAVSEHRLSNKL 92
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 32.0 bits (71), Expect = 0.19
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 3 RAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISKGK 62
R GP + +R PR W SP + R +P S + + + +S+ K
Sbjct: 480 RGGPEGKSSSRSPGP-----HPRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPKKPLSRDK 534
Query: 63 SPD------YANGGKAAMDSRASDAINKSKVDTSASNPSQRRPSRLRGKRSLALP 111
+ A +A SR+ I K + D +PS P R+ R +P
Sbjct: 535 DGEGRARHSEAEATRARRRSRSYSPIRKRRRD----SPSFMEPRRITSARKRPIP 585
Score = 29.6 bits (65), Expect = 0.96
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 16/129 (12%)
Query: 22 RRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISK---------GKSPD-YANGGK 71
RR R ++PRR RRRPR P ++ S+ S G P+ + G
Sbjct: 392 RRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGH 451
Query: 72 AAMDSRASDAINKSK-VDTSASNPSQRRPSRLRGKRSLALP---PR--LECLFPSSCGSR 125
RA + +++ TS S + R GK S P PR PS SR
Sbjct: 452 GGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSR 511
Query: 126 RATSRPGFP 134
A RP P
Sbjct: 512 SAEKRPHSP 520
>gi|122937211 KIAA0368 protein [Homo sapiens]
Length = 2017
Score = 31.2 bits (69), Expect = 0.33
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 20/86 (23%)
Query: 3 RAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRR---RPRGQ---PASENAA----- 51
RA PR A PR+T +T+RR Q+P RL R RPR P + A
Sbjct: 108 RAAPRGPARRTPRSTALTSRRRA--QRPRHGDRLRLRSEARPRAAGDWPCARGGAVRPGR 165
Query: 52 --EPSQVAISKGKSPDYANGGKAAMD 75
P +V ++G A+ G+AA D
Sbjct: 166 PHRPPRVESARG-----AHAGRAATD 186
>gi|124430752 kinesin family member 26B [Homo sapiens]
Length = 2108
Score = 31.2 bits (69), Expect = 0.33
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 3 RAGPRSTA------DTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQV 56
RAGP + A + P A + P P+ K T PRR H R G + ++ ++
Sbjct: 1824 RAGPEAEARGGALAEDEPAAAHLL---PSPYSKITPPRRPH-RCSSGHGSDNSSVLSGEL 1879
Query: 57 AISKGKSP-DYANGGKAAMDS--RASDAINKSKVDTSASNPSQRRPSRLRGK-RSLALPP 112
+ GK+ Y +GG + +S R S+A + +SA + + S + G+ RSL P
Sbjct: 1880 PPAMGKTALFYHSGGSSGYESVMRDSEATGSA---SSAQDSTSENSSSVGGRCRSLKTPK 1936
Query: 113 R 113
+
Sbjct: 1937 K 1937
>gi|239757467 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 30.8 bits (68), Expect = 0.43
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 1 MGRAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISK 60
+G P A A + R+P P P+ L RRR R P + PS S
Sbjct: 92 VGSGRPAGLAARAAAAAPRSLRKPSPSPSPS----LRRRRARNSPGIRPSPSPSP---SP 144
Query: 61 GKSPDYANGGKAAMDSRASDAI 82
SP A GG+ + +S A+
Sbjct: 145 SPSPSPARGGRWTTCASSSPAL 166
>gi|239751993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 30.8 bits (68), Expect = 0.43
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 1 MGRAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISK 60
+G P A A + R+P P P+ L RRR R P + PS S
Sbjct: 92 VGSGRPAGLAARAAAAAPRSLRKPSPSPSPS----LRRRRARNSPGIRPSPSPSP---SP 144
Query: 61 GKSPDYANGGKAAMDSRASDAI 82
SP A GG+ + +S A+
Sbjct: 145 SPSPSPARGGRWTTCASSSPAL 166
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 30.8 bits (68), Expect = 0.43
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 31 TSPRRLHRRRP-RGQPASENAAEPSQVAISKGKSPDYANGGKAAMDSRASDAINKSKVDT 89
T+ RR RP G+P E A Q + P + ++ + AS ++ +
Sbjct: 126 TAARRGGASRPLAGEPWREAARRRPQ------QCPQWGRARESRSAALASPRVSNAPTTP 179
Query: 90 SASNPSQRRPSRLRGKRSL------ALPPRLECLFPSSC-GSRRATSRPGFPP 135
++ NP R R G+R+ A PPR+ P+ C G R+ G P
Sbjct: 180 ASRNPGLRAQERQSGRRAAGGGGARAEPPRVPPCRPAGCSGGNRSRRAAGAGP 232
>gi|239746476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 30.8 bits (68), Expect = 0.43
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 1 MGRAGPRSTADTRPRATVITTRRPRPWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISK 60
+G P A A + R+P P P+ L RRR R P + PS S
Sbjct: 92 VGSGRPAGLAARAAAAAPRSLRKPSPSPSPS----LRRRRARNSPGIRPSPSPSP---SP 144
Query: 61 GKSPDYANGGKAAMDSRASDAI 82
SP A GG+ + +S A+
Sbjct: 145 SPSPSPARGGRWTTCASSSPAL 166
>gi|4507917 WEE1 tyrosine kinase isoform 1 [Homo sapiens]
Length = 646
Score = 30.8 bits (68), Expect = 0.43
Identities = 34/122 (27%), Positives = 40/122 (32%), Gaps = 22/122 (18%)
Query: 26 PWQKPTSPRRLHRRRPRGQPASENAAEPSQVAISKGKSPDYANGGKAAMDSRASDAINKS 85
P + PT P RR P P S E + D A GG A DS + S
Sbjct: 64 PARSPTEPGPERRRSPGPAPGSPGELEEDLLLPGACPGADEAGGG-AEGDSWEEEGFGSS 122
Query: 86 KVDTSASNP----SQRRPSRLRGKRSLALPPRLECLFPSSCGSRRA--------TSRPGF 133
S + P S P R G + P CG+RRA PG
Sbjct: 123 SPVKSPAAPYFLGSSFSPVRCGGPGDAS---------PRGCGARRAGEGRRSPRPDHPGT 173
Query: 134 PP 135
PP
Sbjct: 174 PP 175
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 30.8 bits (68), Expect = 0.43
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 25 RPWQKPTSPRRLHRRRPRGQPASENAAEPS-QVAISKGKSPDYAN-----GGKAAMDSRA 78
RP +P R+ P GQ + N ++ S Q+ ++ G S N G K+A S +
Sbjct: 159 RPRGQPADIRQQPGMMPHGQLTTINQSQLSAQLGLNMGGSNVPHNSPSPPGSKSATPSPS 218
Query: 79 SDAINKSKVDTSASNPSQRRPSRLRGKR 106
S DTS N ++RP+ GK+
Sbjct: 219 SSVHEDEGDDTSKINGGEKRPASDMGKK 246
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 30.8 bits (68), Expect = 0.43
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 29 KPTSPRRLHRRRPRGQPASENAAEPSQVAISKGKSPDYANGGKAAMDSRASDAINKSKVD 88
K P+ +R P+ A EP + + K P +G K A R + ++K
Sbjct: 112 KDREPKPKRKREPKEPKEPRKAKEPKKA--KEHKEPKQKDGAKKARKPREASGTKEAKEK 169
Query: 89 TSASNPSQRRPSRLRGKRSLALP 111
S ++ + R SR K P
Sbjct: 170 RSCTDSAARTKSRKASKEQGPTP 192
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,089,349
Number of Sequences: 37866
Number of extensions: 365216
Number of successful extensions: 1647
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 1533
Number of HSP's gapped (non-prelim): 288
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.