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Search of human proteins with 14251207
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14251207 MOV10-like 1 [Homo sapiens]
(1211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14251207 MOV10-like 1 [Homo sapiens] 2439 0.0
gi|194272168 Mov10, Moloney leukemia virus 10, homolog [Homo sap... 423 e-118
gi|14211540 Mov10, Moloney leukemia virus 10, homolog [Homo sapi... 423 e-118
gi|72534700 hypothetical protein LOC54967 isoform 1 [Homo sapiens] 239 9e-63
gi|8923493 hypothetical protein LOC54967 isoform 2 [Homo sapiens] 239 1e-62
gi|239746938 PREDICTED: similar to hCG1736317 isoform 1 [Homo sa... 227 5e-59
gi|169217258 PREDICTED: similar to hCG1736317 [Homo sapiens] 208 2e-53
gi|239746940 PREDICTED: similar to hCG1736317 isoform 2 [Homo sa... 208 2e-53
gi|169217256 PREDICTED: similar to chromosome X open reading fra... 197 5e-50
gi|169216878 PREDICTED: similar to chromosome X open reading fra... 197 5e-50
gi|54792138 helicase with zinc finger domain [Homo sapiens] 194 6e-49
gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens] 155 2e-37
gi|156105693 PPAR-alpha interacting complex protein 285 isoform ... 139 1e-32
gi|156105695 PPAR-alpha interacting complex protein 285 isoform ... 131 4e-30
gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens] 123 9e-28
gi|122937299 DNA replication helicase 2 homolog [Homo sapiens] 112 2e-24
gi|113722133 senataxin [Homo sapiens] 102 3e-21
gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens] 68 5e-11
gi|38788372 aquarius [Homo sapiens] 51 6e-06
gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens] 36 0.25
gi|14780902 membrane protein, palmitoylated 4 [Homo sapiens] 33 1.6
gi|31563534 replication factor C 2 isoform 1 [Homo sapiens] 33 2.1
gi|31881687 replication factor C 4 [Homo sapiens] 32 2.8
gi|4506491 replication factor C 4 [Homo sapiens] 32 2.8
gi|194306571 replication factor C 5 isoform 2 [Homo sapiens] 32 3.7
gi|194306567 replication factor C 5 isoform 2 [Homo sapiens] 32 3.7
gi|6677723 replication factor C 5 isoform 1 [Homo sapiens] 32 3.7
gi|28882049 replication factor C 2 isoform 2 [Homo sapiens] 32 4.8
gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Hom... 32 4.8
gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Hom... 32 4.8
>gi|14251207 MOV10-like 1 [Homo sapiens]
Length = 1211
Score = 2439 bits (6322), Expect = 0.0
Identities = 1211/1211 (100%), Positives = 1211/1211 (100%)
Query: 1 MLSLAAKLVAFFWRTADTPREEAGQLEPELAEGDTKLKTVRGVVTRYCSDYGMIDDMIYF 60
MLSLAAKLVAFFWRTADTPREEAGQLEPELAEGDTKLKTVRGVVTRYCSDYGMIDDMIYF
Sbjct: 1 MLSLAAKLVAFFWRTADTPREEAGQLEPELAEGDTKLKTVRGVVTRYCSDYGMIDDMIYF 60
Query: 61 SSDAVTSRVLLNVGQEVIAVVEENKVSNGLKAIRVEAVSDKWEDDSRNHGSPSDCGPRVL 120
SSDAVTSRVLLNVGQEVIAVVEENKVSNGLKAIRVEAVSDKWEDDSRNHGSPSDCGPRVL
Sbjct: 61 SSDAVTSRVLLNVGQEVIAVVEENKVSNGLKAIRVEAVSDKWEDDSRNHGSPSDCGPRVL 120
Query: 121 IGCVTSLVEGAGCISQTTYFSLESVCEGFEPCKGDWVEAEYRIRPGTWSSEATSVKPLRY 180
IGCVTSLVEGAGCISQTTYFSLESVCEGFEPCKGDWVEAEYRIRPGTWSSEATSVKPLRY
Sbjct: 121 IGCVTSLVEGAGCISQTTYFSLESVCEGFEPCKGDWVEAEYRIRPGTWSSEATSVKPLRY 180
Query: 181 KRVDKVCISSLCGRNGVLEESIFFTLDSLKLPDGYTPRRGDVVNAVVVESSQSCYVWRAL 240
KRVDKVCISSLCGRNGVLEESIFFTLDSLKLPDGYTPRRGDVVNAVVVESSQSCYVWRAL
Sbjct: 181 KRVDKVCISSLCGRNGVLEESIFFTLDSLKLPDGYTPRRGDVVNAVVVESSQSCYVWRAL 240
Query: 241 CMTLVKRRDAAPVHEATHFYGTILLKNKGDIEVTQVTHFGTLKEGRSKTMVIWIENKGDI 300
CMTLVKRRDAAPVHEATHFYGTILLKNKGDIEVTQVTHFGTLKEGRSKTMVIWIENKGDI
Sbjct: 241 CMTLVKRRDAAPVHEATHFYGTILLKNKGDIEVTQVTHFGTLKEGRSKTMVIWIENKGDI 300
Query: 301 PQNLVSCKLAGWDKSKQFRFQMLDKDQMCPVVSFVSVPEKENSSDENINSLNSHTKNKTS 360
PQNLVSCKLAGWDKSKQFRFQMLDKDQMCPVVSFVSVPEKENSSDENINSLNSHTKNKTS
Sbjct: 301 PQNLVSCKLAGWDKSKQFRFQMLDKDQMCPVVSFVSVPEKENSSDENINSLNSHTKNKTS 360
Query: 361 QMSESSLVNNRGISPGDCTCKGENGEKDNILSRKQMTEPEPGGLVPPGGKTFIVVICDGK 420
QMSESSLVNNRGISPGDCTCKGENGEKDNILSRKQMTEPEPGGLVPPGGKTFIVVICDGK
Sbjct: 361 QMSESSLVNNRGISPGDCTCKGENGEKDNILSRKQMTEPEPGGLVPPGGKTFIVVICDGK 420
Query: 421 NPGRCKELLLLCFSDFLIGRYLEVNVISGEESLIAAREPFSWKKLKSSQALTSAKTTVVV 480
NPGRCKELLLLCFSDFLIGRYLEVNVISGEESLIAAREPFSWKKLKSSQALTSAKTTVVV
Sbjct: 421 NPGRCKELLLLCFSDFLIGRYLEVNVISGEESLIAAREPFSWKKLKSSQALTSAKTTVVV 480
Query: 481 TAQKRNSRRQLPSFLPQYPIPDRLRKCVEQKIDILTFQPLLAELLNMSNYKEKFSTLLWL 540
TAQKRNSRRQLPSFLPQYPIPDRLRKCVEQKIDILTFQPLLAELLNMSNYKEKFSTLLWL
Sbjct: 481 TAQKRNSRRQLPSFLPQYPIPDRLRKCVEQKIDILTFQPLLAELLNMSNYKEKFSTLLWL 540
Query: 541 EEIYAEMELKEYNMSGIILRRNGDLLVLEVPGLAEGRPSLYAGDKLILKTQEYNGHAIEY 600
EEIYAEMELKEYNMSGIILRRNGDLLVLEVPGLAEGRPSLYAGDKLILKTQEYNGHAIEY
Sbjct: 541 EEIYAEMELKEYNMSGIILRRNGDLLVLEVPGLAEGRPSLYAGDKLILKTQEYNGHAIEY 600
Query: 601 ISYVTEIHEEDVTLKINPEFEQAYNFEPMDVEFTYNRTTSRRCHFALEHVIHLGVKVLFP 660
ISYVTEIHEEDVTLKINPEFEQAYNFEPMDVEFTYNRTTSRRCHFALEHVIHLGVKVLFP
Sbjct: 601 ISYVTEIHEEDVTLKINPEFEQAYNFEPMDVEFTYNRTTSRRCHFALEHVIHLGVKVLFP 660
Query: 661 EEIILQSPQVTGNWNHAQDTKSSGQSTSKKNRKTMTDQAEHGTEERRVGDKDLPVLAPFT 720
EEIILQSPQVTGNWNHAQDTKSSGQSTSKKNRKTMTDQAEHGTEERRVGDKDLPVLAPFT
Sbjct: 661 EEIILQSPQVTGNWNHAQDTKSSGQSTSKKNRKTMTDQAEHGTEERRVGDKDLPVLAPFT 720
Query: 721 AEMSDWVDEIQTPKARKMEFFNPVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTI 780
AEMSDWVDEIQTPKARKMEFFNPVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTI
Sbjct: 721 AEMSDWVDEIQTPKARKMEFFNPVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTI 780
Query: 781 IEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPATMVRVNATCRFEEIVIDA 840
IEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPATMVRVNATCRFEEIVIDA
Sbjct: 781 IEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPATMVRVNATCRFEEIVIDA 840
Query: 841 VKPYCRDGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPL 900
VKPYCRDGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPL
Sbjct: 841 VKPYCRDGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPL 900
Query: 901 GLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAH 960
GLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAH
Sbjct: 901 GLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAH 960
Query: 961 NPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPKKGFPLIFHG 1020
NPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPKKGFPLIFHG
Sbjct: 961 NPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPKKGFPLIFHG 1020
Query: 1021 VRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILL 1080
VRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILL
Sbjct: 1021 VRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILL 1080
Query: 1081 RNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPK 1140
RNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPK
Sbjct: 1081 RNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPK 1140
Query: 1141 ALLIVLGNPHVLVRDPCFGALLEYSITNGVYMGCDLPPALQSLQNCGEGVADPSYPVVPE 1200
ALLIVLGNPHVLVRDPCFGALLEYSITNGVYMGCDLPPALQSLQNCGEGVADPSYPVVPE
Sbjct: 1141 ALLIVLGNPHVLVRDPCFGALLEYSITNGVYMGCDLPPALQSLQNCGEGVADPSYPVVPE 1200
Query: 1201 STGPEKHQEPS 1211
STGPEKHQEPS
Sbjct: 1201 STGPEKHQEPS 1211
>gi|194272168 Mov10, Moloney leukemia virus 10, homolog [Homo sapiens]
Length = 1003
Score = 423 bits (1087), Expect = e-118
Identities = 297/825 (36%), Positives = 425/825 (51%), Gaps = 131/825 (15%)
Query: 436 FLIGRYLEVNVISGEESLIAAREPFSWKKLKSSQALTSAKTTVVVTAQKRNSRRQLPSFL 495
F I R+L S + + PF ++ + +T+ + + +L L
Sbjct: 232 FYIARFLAAVAHSPLAAQLKPMTPFKRTRITGNPVVTNRIEEGERPDRAKGYDLELSMAL 291
Query: 496 PQYPIPDRLRKCVE---QKIDILTFQPLLAEL-------LNMSNYKEKFSTLLWLEEIYA 545
Y P RLR+ + Q I T +AE+ L NY+ K LL LEE+
Sbjct: 292 GTYYPPPRLRQLLPMLLQGTSIFTAPKEIAEIKAQLETALKWRNYEVKLRLLLHLEELQM 351
Query: 546 EMELKEYNMSGIILR-----RNGDLLVLEVPGLAEGRPSLYAGDKL--ILKTQEYNGHAI 598
E +++ Y++ + + +N LL LEVPG+ E RPS+ GD L +L ++ + I
Sbjct: 352 EHDIRHYDLESVPMTWDPVDQNPRLLTLEVPGVTESRPSVLRGDHLFALLSSETHQEDPI 411
Query: 599 EYISYVTEIHEEDVTLKIN----PEFEQAYNFEPMDVEFTYNRTTSRRCHFALEHVIHLG 654
Y +V ++ + V L + F F+ V FT+NR R H AL
Sbjct: 412 TYKGFVHKVELDRVKLSFSMSLLSRFVDGLTFK---VNFTFNRQPLRVQHRAL------- 461
Query: 655 VKVLFPEEIILQSPQVTGNWNHAQDTKSSGQSTSKKNRKTMTDQAEHGTEERRVGDKDLP 714
++TG W V +D+P
Sbjct: 462 --------------ELTGRWLLWPMLFP-------------------------VAPRDVP 482
Query: 715 VLAPFTAEMSDWVDEIQTPKARKMEFFNPVLNEN--QKLAVKRILSGDCRPLPYILFGPP 772
+L P K++ ++ L N Q A++ I++G RP PYI+FGPP
Sbjct: 483 LL----------------PSDVKLKLYDRSLESNPEQLQAMRHIVTGTTRPAPYIIFGPP 526
Query: 773 GTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPATMVRVNATCR 832
GTGKTVT++EA+ QV LP + IL CAPSNS ADL+C RL +V P+++ R+ A R
Sbjct: 527 GTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRL---RVHLPSSIYRLLAPSR 583
Query: 833 FEEIVIDAVKPYC----RDGEDIWKASR----FRIIITTCSSSGLFYQIGVRVGHFTHVF 884
+V + +KP C + GE ++ A + +R++ITT ++G + HFTH+F
Sbjct: 584 DIRMVPEDIKPCCNWDAKKGEYVFPAKKKLQEYRVLITTLITAGRLVSAQFPIDHFTHIF 643
Query: 885 VDEAGQASEPECLIPL-GLMS-----DISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFL 938
+DEAG EPE L+ + GLM D GQ+VLAGDP QLGPV++S L +GL S L
Sbjct: 644 IDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLL 703
Query: 939 ERLMS-RPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADP 997
ERL++ Y++ + + +P +TKL++NYRSH +L +P++L+Y EL+ CAD
Sbjct: 704 ERLLTYNSLYKKGPDGY------DPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADV 757
Query: 998 TVVTSLLGWEKLPKKGFPLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSIS-- 1055
W LP++GFP+IFHGV G + REG SPS+FNP EA V Y LL S
Sbjct: 758 VDRERFCRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKK 817
Query: 1056 --SQVSASDIGVITPYRKQVEKIRILLRNV--------DLMDIKVGSVEEFQGQEYLVII 1105
+++S +GVI+PYRKQVEKIR + + D+ D+KVGSVEEFQGQE VI+
Sbjct: 818 GKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVIL 877
Query: 1106 ISTVRSNEDRFEDDRYF-LGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEY 1164
ISTVRS++ + D F LGFL N KRFNVA+TR KALLI++GNP +L DP + LE+
Sbjct: 878 ISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHDPDWKVFLEF 937
Query: 1165 SITNGVYMGCDLPPA--LQSLQNCGEGVADPSYPVVPESTGPEKH 1207
NG Y GC P LQ QN +G++ S P ++GP H
Sbjct: 938 CKENGGYTGCPFPAKLDLQQGQNLLQGLSKLS----PSTSGPHSH 978
>gi|14211540 Mov10, Moloney leukemia virus 10, homolog [Homo sapiens]
Length = 1003
Score = 423 bits (1087), Expect = e-118
Identities = 297/825 (36%), Positives = 425/825 (51%), Gaps = 131/825 (15%)
Query: 436 FLIGRYLEVNVISGEESLIAAREPFSWKKLKSSQALTSAKTTVVVTAQKRNSRRQLPSFL 495
F I R+L S + + PF ++ + +T+ + + +L L
Sbjct: 232 FYIARFLAAVAHSPLAAQLKPMTPFKRTRITGNPVVTNRIEEGERPDRAKGYDLELSMAL 291
Query: 496 PQYPIPDRLRKCVE---QKIDILTFQPLLAEL-------LNMSNYKEKFSTLLWLEEIYA 545
Y P RLR+ + Q I T +AE+ L NY+ K LL LEE+
Sbjct: 292 GTYYPPPRLRQLLPMLLQGTSIFTAPKEIAEIKAQLETALKWRNYEVKLRLLLHLEELQM 351
Query: 546 EMELKEYNMSGIILR-----RNGDLLVLEVPGLAEGRPSLYAGDKL--ILKTQEYNGHAI 598
E +++ Y++ + + +N LL LEVPG+ E RPS+ GD L +L ++ + I
Sbjct: 352 EHDIRHYDLESVPMTWDPVDQNPRLLTLEVPGVTESRPSVLRGDHLFALLSSETHQEDPI 411
Query: 599 EYISYVTEIHEEDVTLKIN----PEFEQAYNFEPMDVEFTYNRTTSRRCHFALEHVIHLG 654
Y +V ++ + V L + F F+ V FT+NR R H AL
Sbjct: 412 TYKGFVHKVELDRVKLSFSMSLLSRFVDGLTFK---VNFTFNRQPLRVQHRAL------- 461
Query: 655 VKVLFPEEIILQSPQVTGNWNHAQDTKSSGQSTSKKNRKTMTDQAEHGTEERRVGDKDLP 714
++TG W V +D+P
Sbjct: 462 --------------ELTGRWLLWPMLFP-------------------------VAPRDVP 482
Query: 715 VLAPFTAEMSDWVDEIQTPKARKMEFFNPVLNEN--QKLAVKRILSGDCRPLPYILFGPP 772
+L P K++ ++ L N Q A++ I++G RP PYI+FGPP
Sbjct: 483 LL----------------PSDVKLKLYDRSLESNPEQLQAMRHIVTGTTRPAPYIIFGPP 526
Query: 773 GTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPATMVRVNATCR 832
GTGKTVT++EA+ QV LP + IL CAPSNS ADL+C RL +V P+++ R+ A R
Sbjct: 527 GTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRL---RVHLPSSIYRLLAPSR 583
Query: 833 FEEIVIDAVKPYC----RDGEDIWKASR----FRIIITTCSSSGLFYQIGVRVGHFTHVF 884
+V + +KP C + GE ++ A + +R++ITT ++G + HFTH+F
Sbjct: 584 DIRMVPEDIKPCCNWDAKKGEYVFPAKKKLQEYRVLITTLITAGRLVSAQFPIDHFTHIF 643
Query: 885 VDEAGQASEPECLIPL-GLMS-----DISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFL 938
+DEAG EPE L+ + GLM D GQ+VLAGDP QLGPV++S L +GL S L
Sbjct: 644 IDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLL 703
Query: 939 ERLMS-RPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADP 997
ERL++ Y++ + + +P +TKL++NYRSH +L +P++L+Y EL+ CAD
Sbjct: 704 ERLLTYNSLYKKGPDGY------DPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADV 757
Query: 998 TVVTSLLGWEKLPKKGFPLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSIS-- 1055
W LP++GFP+IFHGV G + REG SPS+FNP EA V Y LL S
Sbjct: 758 VDRERFCRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKK 817
Query: 1056 --SQVSASDIGVITPYRKQVEKIRILLRNV--------DLMDIKVGSVEEFQGQEYLVII 1105
+++S +GVI+PYRKQVEKIR + + D+ D+KVGSVEEFQGQE VI+
Sbjct: 818 GKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVIL 877
Query: 1106 ISTVRSNEDRFEDDRYF-LGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEY 1164
ISTVRS++ + D F LGFL N KRFNVA+TR KALLI++GNP +L DP + LE+
Sbjct: 878 ISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHDPDWKVFLEF 937
Query: 1165 SITNGVYMGCDLPPA--LQSLQNCGEGVADPSYPVVPESTGPEKH 1207
NG Y GC P LQ QN +G++ S P ++GP H
Sbjct: 938 CKENGGYTGCPFPAKLDLQQGQNLLQGLSKLS----PSTSGPHSH 978
>gi|72534700 hypothetical protein LOC54967 isoform 1 [Homo sapiens]
Length = 264
Score = 239 bits (611), Expect = 9e-63
Identities = 132/257 (51%), Positives = 170/257 (66%), Gaps = 14/257 (5%)
Query: 1 MLSLAAKLVAFFWRTADTPREEAGQLEPELAEGDTKLKTVRGVVTRYCSDYGMIDDMIYF 60
ML L +AF+ RTAD P E G + L +GDT+L TV+GVVT +C DYGMID+ IYF
Sbjct: 1 MLRLLRLALAFYGRTAD-PAERQGPQQQGLPQGDTQLTTVQGVVTSFCGDYGMIDESIYF 59
Query: 61 SSDAVTSRVLLNVGQEVIAVVEENKVSNGLKAIRVEAVSDKWEDDSRNHGSPSDCGPRVL 120
SSD VT V L VGQ+V VVEE+K GL+AI+V+ V PSD G RVL
Sbjct: 60 SSDVVTGNVPLKVGQKVNVVVEEDKPHYGLRAIKVDVVPRHLYG-----AGPSDSGTRVL 114
Query: 121 IGCVTSLVEGAGCISQTTYFSLESVCEGFEPCKGDWVEAEYRIRPGTWSSEATSVKPLRY 180
IGCVTS+ E IS + YFS+ V E F P KGD +E EY PG + +ATSVKP+R
Sbjct: 115 IGCVTSINEDNIYISNSIYFSIAIVSEDFVPYKGDLLEVEYSTEPGISNIKATSVKPIRC 174
Query: 181 KRVDKVCISSLCGRNGVLEESIFFTLDSLKLPDGYTPRRGDVVNAVVVESSQSCYVWRAL 240
++VCI+S+ GRNGV++ +IFFTLDS+KLPDGY P+ D+VN V+VES Q C++WRA+
Sbjct: 175 IHTEEVCITSVHGRNGVIDYTIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQFCFIWRAI 234
Query: 241 CMTLVKRRDAAPVHEAT 257
+T PVH+++
Sbjct: 235 SIT--------PVHKSS 243
>gi|8923493 hypothetical protein LOC54967 isoform 2 [Homo sapiens]
Length = 242
Score = 239 bits (610), Expect = 1e-62
Identities = 130/247 (52%), Positives = 166/247 (67%), Gaps = 6/247 (2%)
Query: 1 MLSLAAKLVAFFWRTADTPREEAGQLEPELAEGDTKLKTVRGVVTRYCSDYGMIDDMIYF 60
ML L +AF+ RTAD P E G + L +GDT+L TV+GVVT +C DYGMID+ IYF
Sbjct: 1 MLRLLRLALAFYGRTAD-PAERQGPQQQGLPQGDTQLTTVQGVVTSFCGDYGMIDESIYF 59
Query: 61 SSDAVTSRVLLNVGQEVIAVVEENKVSNGLKAIRVEAVSDKWEDDSRNHGSPSDCGPRVL 120
SSD VT V L VGQ+V VVEE+K GL+AI+V+ V PSD G RVL
Sbjct: 60 SSDVVTGNVPLKVGQKVNVVVEEDKPHYGLRAIKVDVVPRHLYG-----AGPSDSGTRVL 114
Query: 121 IGCVTSLVEGAGCISQTTYFSLESVCEGFEPCKGDWVEAEYRIRPGTWSSEATSVKPLRY 180
IGCVTS+ E IS + YFS+ V E F P KGD +E EY PG + +ATSVKP+R
Sbjct: 115 IGCVTSINEDNIYISNSIYFSIAIVSEDFVPYKGDLLEVEYSTEPGISNIKATSVKPIRC 174
Query: 181 KRVDKVCISSLCGRNGVLEESIFFTLDSLKLPDGYTPRRGDVVNAVVVESSQSCYVWRAL 240
++VCI+S+ GRNGV++ +IFFTLDS+KLPDGY P+ D+VN V+VES Q C++WRA+
Sbjct: 175 IHTEEVCITSVHGRNGVIDYTIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQFCFIWRAI 234
Query: 241 CMTLVKR 247
+T V +
Sbjct: 235 SITPVHK 241
>gi|239746938 PREDICTED: similar to hCG1736317 isoform 1 [Homo
sapiens]
Length = 242
Score = 227 bits (579), Expect = 5e-59
Identities = 123/247 (49%), Positives = 163/247 (65%), Gaps = 6/247 (2%)
Query: 1 MLSLAAKLVAFFWRTADTPREEAGQLEPELAEGDTKLKTVRGVVTRYCSDYGMIDDMIYF 60
ML L + +AFF TA P E+ G + L EGDT+L TV+GVVT +C DYG+ID+ IYF
Sbjct: 1 MLRLLRRALAFFHSTAH-PTEQQGPQQQGLPEGDTQLTTVQGVVTSFCGDYGVIDESIYF 59
Query: 61 SSDAVTSRVLLNVGQEVIAVVEENKVSNGLKAIRVEAVSDKWEDDSRNHGSPSDCGPRVL 120
SSD VT V L VGQ+V VVEE+K+ GL+AI+V+ V DD PSD RVL
Sbjct: 60 SSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVPHPLNDDG-----PSDSKIRVL 114
Query: 121 IGCVTSLVEGAGCISQTTYFSLESVCEGFEPCKGDWVEAEYRIRPGTWSSEATSVKPLRY 180
GCVTS+ E IS YF ++ V E F P KG+W++ EY PG + +A+SVKP R
Sbjct: 115 NGCVTSISEDTVYISNIIYFPMDIVSEDFVPYKGNWLKVEYSTEPGFLNFKASSVKPTRC 174
Query: 181 KRVDKVCISSLCGRNGVLEESIFFTLDSLKLPDGYTPRRGDVVNAVVVESSQSCYVWRAL 240
+ V I+ + GR+GV++ +IFFTLDS+KLPDGY P+ D+VN V+VES Q C+ WRA+
Sbjct: 175 IHAEAVRITHIRGRSGVIKNTIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQFCFKWRAV 234
Query: 241 CMTLVKR 247
+T V++
Sbjct: 235 SITPVQK 241
>gi|169217258 PREDICTED: similar to hCG1736317 [Homo sapiens]
Length = 235
Score = 208 bits (530), Expect = 2e-53
Identities = 109/214 (50%), Positives = 145/214 (67%), Gaps = 5/214 (2%)
Query: 34 DTKLKTVRGVVTRYCSDYGMIDDMIYFSSDAVTSRVLLNVGQEVIAVVEENKVSNGLKAI 93
DT+L TV+GVVT +C DYG+ID+ IYFSSD VT V L VGQ+V VVEE+K+ GL+AI
Sbjct: 26 DTQLTTVQGVVTSFCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAI 85
Query: 94 RVEAVSDKWEDDSRNHGSPSDCGPRVLIGCVTSLVEGAGCISQTTYFSLESVCEGFEPCK 153
+V+ V DD PSD RVL GCVTS+ E IS YF ++ V E F P K
Sbjct: 86 KVDVVPHPLNDDG-----PSDSKIRVLNGCVTSISEDTVYISNIIYFPMDIVSEDFVPYK 140
Query: 154 GDWVEAEYRIRPGTWSSEATSVKPLRYKRVDKVCISSLCGRNGVLEESIFFTLDSLKLPD 213
G+W++ EY PG + +A+SVKP R + V I+ + GR+GV++ +IFFTLDS+KLPD
Sbjct: 141 GNWLKVEYSTEPGFLNFKASSVKPTRCIHAEAVRITHIRGRSGVIKNTIFFTLDSVKLPD 200
Query: 214 GYTPRRGDVVNAVVVESSQSCYVWRALCMTLVKR 247
GY P+ D+VN V+VES Q C+ WRA+ +T V++
Sbjct: 201 GYVPQVDDIVNVVMVESIQFCFKWRAVSITPVQK 234
>gi|239746940 PREDICTED: similar to hCG1736317 isoform 2 [Homo
sapiens]
Length = 224
Score = 208 bits (530), Expect = 2e-53
Identities = 109/214 (50%), Positives = 145/214 (67%), Gaps = 5/214 (2%)
Query: 34 DTKLKTVRGVVTRYCSDYGMIDDMIYFSSDAVTSRVLLNVGQEVIAVVEENKVSNGLKAI 93
DT+L TV+GVVT +C DYG+ID+ IYFSSD VT V L VGQ+V VVEE+K+ GL+AI
Sbjct: 15 DTQLTTVQGVVTSFCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAI 74
Query: 94 RVEAVSDKWEDDSRNHGSPSDCGPRVLIGCVTSLVEGAGCISQTTYFSLESVCEGFEPCK 153
+V+ V DD PSD RVL GCVTS+ E IS YF ++ V E F P K
Sbjct: 75 KVDVVPHPLNDDG-----PSDSKIRVLNGCVTSISEDTVYISNIIYFPMDIVSEDFVPYK 129
Query: 154 GDWVEAEYRIRPGTWSSEATSVKPLRYKRVDKVCISSLCGRNGVLEESIFFTLDSLKLPD 213
G+W++ EY PG + +A+SVKP R + V I+ + GR+GV++ +IFFTLDS+KLPD
Sbjct: 130 GNWLKVEYSTEPGFLNFKASSVKPTRCIHAEAVRITHIRGRSGVIKNTIFFTLDSVKLPD 189
Query: 214 GYTPRRGDVVNAVVVESSQSCYVWRALCMTLVKR 247
GY P+ D+VN V+VES Q C+ WRA+ +T V++
Sbjct: 190 GYVPQVDDIVNVVMVESIQFCFKWRAVSITPVQK 223
>gi|169217256 PREDICTED: similar to chromosome X open reading frame
48 [Homo sapiens]
Length = 224
Score = 197 bits (501), Expect = 5e-50
Identities = 104/211 (49%), Positives = 138/211 (65%), Gaps = 13/211 (6%)
Query: 47 YCSDYGMIDDMIYFSSDAVTSRVLLNVGQEVIAVVEENKVSNGLKAIRVEAVSDKWEDDS 106
+C DYGMID+ IYFSSD VT V L VGQ+V VVEE+K+ GL+AI+V+ V
Sbjct: 6 FCGDYGMIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVPRHLYG-- 63
Query: 107 RNHGSPSDCGPRVLIGCVTSLVEGAGCISQTTYFSLESVCEGFEPCKGDWVEAEYRIRPG 166
PSD G RVLIGCVTS+ E IS YF ++ V E F P KG+W++ EY PG
Sbjct: 64 ---AGPSDSGTRVLIGCVTSICEDIIYISNCIYFFIDIVSEDFVPYKGNWLKVEYSTEPG 120
Query: 167 TWSSEATSVKPLRYKRVDKVCISSLCGRNGVLEESIFFTLDSLKLPDGYTPRRGDVVNAV 226
+ +A+SVK + VCI+S+ GRNGV++ +IFFTLDS+KLPDGY P+ D+VN V
Sbjct: 121 FSNFKASSVKSTHCIHAEAVCITSVHGRNGVIDYTIFFTLDSVKLPDGYVPQVDDIVNVV 180
Query: 227 VVESSQSCYVWRALCMTLVKRRDAAPVHEAT 257
+VES Q C++WRA+ +T PVH+++
Sbjct: 181 MVESIQFCFIWRAISIT--------PVHKSS 203
>gi|169216878 PREDICTED: similar to chromosome X open reading frame
48 [Homo sapiens]
Length = 224
Score = 197 bits (501), Expect = 5e-50
Identities = 104/211 (49%), Positives = 138/211 (65%), Gaps = 13/211 (6%)
Query: 47 YCSDYGMIDDMIYFSSDAVTSRVLLNVGQEVIAVVEENKVSNGLKAIRVEAVSDKWEDDS 106
+C DYGMID+ IYFSSD VT V L VGQ+V VVEE+K+ GL+AI+V+ V
Sbjct: 6 FCGDYGMIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVPRHLYG-- 63
Query: 107 RNHGSPSDCGPRVLIGCVTSLVEGAGCISQTTYFSLESVCEGFEPCKGDWVEAEYRIRPG 166
PSD G RVLIGCVTS+ E IS YF ++ V E F P KG+W++ EY PG
Sbjct: 64 ---AGPSDSGTRVLIGCVTSICEDIIYISNCIYFFIDIVSEDFVPYKGNWLKVEYSTEPG 120
Query: 167 TWSSEATSVKPLRYKRVDKVCISSLCGRNGVLEESIFFTLDSLKLPDGYTPRRGDVVNAV 226
+ +A+SVK + VCI+S+ GRNGV++ +IFFTLDS+KLPDGY P+ D+VN V
Sbjct: 121 FSNFKASSVKSTHCIHAEAVCITSVHGRNGVIDYTIFFTLDSVKLPDGYVPQVDDIVNVV 180
Query: 227 VVESSQSCYVWRALCMTLVKRRDAAPVHEAT 257
+VES Q C++WRA+ +T PVH+++
Sbjct: 181 MVESIQFCFIWRAISIT--------PVHKSS 203
>gi|54792138 helicase with zinc finger domain [Homo sapiens]
Length = 1942
Score = 194 bits (492), Expect = 6e-49
Identities = 217/764 (28%), Positives = 333/764 (43%), Gaps = 102/764 (13%)
Query: 431 LCFSDFLIGRYLEVNVIS-GEESLIAAREPFSWKKLKSSQALTSAKTTVVVTAQK-RNSR 488
+ F+ + G + + V G E ++ R + + L AK +V TA++ +S
Sbjct: 351 IAFNTEIFGTFRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHAKQQLVTTAKRWDSSS 410
Query: 489 RQLPSFLPQYPIPDRLRKCVEQKI----DILTFQPLLAELLNMSNYKEKFSTLLWLEEIY 544
+ + F P + +I D L Q +L + L SNY+ + LL++EEI
Sbjct: 411 KTIIDFEPNETTDLEKSLLIRYQIPLSADQLFTQSVLDKSLTKSNYQSRLHDLLYIEEIA 470
Query: 545 AEMELKEYNMSGIILRRNGDLLVLEVPGLAEGRPSLYAGDKLILKTQEYNGHAIEYISYV 604
E+ ++N+ + L+ ++ V G A+ YA NG
Sbjct: 471 QYKEISKFNLK-VQLQILASFMLTGVSGGAK-----YA----------QNGQLFGRFKLT 514
Query: 605 TEIHEEDVTLKINPEFEQAYNFEPMDVEFTYNRTTSRRCHFALEHVIHLGVKVLFPEEII 664
+ E+ + ++ A P+ + ++ E V ++ E I
Sbjct: 515 ETLSEDTLAGRLVMTKVNAVYLLPVPKQKLVQTQGTK------EKVYEATIEEKTKEYIF 568
Query: 665 LQ-SPQVTGNWNHAQDTKSSGQSTSKKNRKTMTDQAEHGTEERRVGDKDLPVLAPFTAEM 723
L+ S + N D + + + NR + + H +R KD VL P ++
Sbjct: 569 LRLSRECCEELNLRPDCDTQVELQFQLNRLPLCEM--HYALDRI---KDNGVLFP---DI 620
Query: 724 SDWVDEIQTPKARKMEFFNPVLNENQKLAVKRILSGDCRPLPYILF-GPPGTGKTVTIIE 782
S +P + E +P LN QK AV I + LP +L GP GTGKT T+ +
Sbjct: 621 SMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQ 680
Query: 783 AVLQVHFALPDSRILVCAPSNSAADLVC---LRLHESKVLQPATMVRVNATCRFEEIVID 839
AV + ++RIL+C SNSAADL L + A +RV R+ + V
Sbjct: 681 AVKHI-LQQQETRILICTHSNSAADLYIKDYLHPYVEAGNPQARPLRVYFRNRWVKTVHP 739
Query: 840 AVKPYCR-----------DGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEA 888
V YC EDI K R+++ T ++S Q+ + G FTH+ +DEA
Sbjct: 740 VVHQYCLISSAHSTFQMPQKEDILK---HRVVVVTLNTSQYLCQLDLEPGFFTHILLDEA 796
Query: 889 GQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQ 948
QA E E ++PL L + + +IVLAGD MQL P + S A L+VS L+RL Y+
Sbjct: 797 AQAMECETIMPLALATQ-NTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRL-----YE 850
Query: 949 RDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEK 1008
F P + L +NYRSHEA++ S LFY +L G +
Sbjct: 851 HYPAEF-------PCRIL-LCENYRSHEAIINYTSELFYEGKLMAS----------GKQP 892
Query: 1009 LPKKGFPLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSIS---SQVSASDIGV 1065
K +PL F RG + +E S +++N AE +V+ L ++ IGV
Sbjct: 893 AHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGV 952
Query: 1066 ITPYRKQVEKIRILLRNVDLMDIKVGSVEEFQGQEYLVIIISTVRSN------------- 1112
+TPY QV +IR LR L D+ V V QG+++ V+ +STVR+
Sbjct: 953 VTPYADQVFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKK 1012
Query: 1113 ----EDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVL 1152
ED ED Y GFLSN K N AITR ++L+ V+G+P L
Sbjct: 1013 EQLLEDSTEDLDY--GFLSNYKLLNTAITRAQSLVAVVGDPIAL 1054
>gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens]
Length = 1118
Score = 155 bits (393), Expect = 2e-37
Identities = 147/488 (30%), Positives = 224/488 (45%), Gaps = 90/488 (18%)
Query: 722 EMSDWVDEIQTPKARKMEFFNPVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTII 781
E+ D + + Q PK + P LN +Q AVK +L RPL I GPPGTGKTVT
Sbjct: 449 EVEDVIIKCQLPKRFTAQGL-PDLNHSQVYAVKTVLQ---RPLSLIQ-GPPGTGKTVT-- 501
Query: 782 EAVLQVHFALP-DSRILVCAPSNSAADLVCLRLHES--KVLQ-----------PATMVRV 827
A + H A + +LVCAPSN A D + ++H++ KV++ P + + +
Sbjct: 502 SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL 561
Query: 828 NATCRFEEIVIDAVKPYCRDGEDIWKAS----RFR---------------IIITTCSSSG 868
+ R + + + K E +S R+R +I TC +G
Sbjct: 562 HNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG 621
Query: 869 LFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLA 928
+ F + +DE+ QA+EPEC++P+ L + Q++L GD QLGPV+ + A
Sbjct: 622 ---DPRLAKMQFRSILIDESTQATEPECMVPVVLGAK---QLILVGDHCQLGPVVMCKKA 675
Query: 929 MAYGLNVSFLERLMS---RPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRL 985
GL+ S ERL+ RP +L YR H AL PS +
Sbjct: 676 AKAGLSQSLFERLVVLGIRPI--------------------RLQVQYRMHPALSAFPSNI 715
Query: 986 FYHRELE---VCADPTVVTSLLGWEKLPKKGFPLIFHGVRGSEAREGKSPSWFNPAEAVQ 1042
FY L+ AD W P+ P+ F+ +G E S+ N EA
Sbjct: 716 FYEGSLQNGVTAADRVKKGFDFQW---PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAAN 772
Query: 1043 VLRYCCLLAHSISSQVSASDIGVITPYRKQ----VEKIRIL--LRNVDLMDIKVGSVEEF 1096
V + L + + IG+ITPY Q V+ ++ L ++++ SV+ F
Sbjct: 773 VEKITTKL---LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF 829
Query: 1097 QGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDP 1156
QG+E II+S VR+NE + +GFL++ +R NVA+TR + +I++GNP L + P
Sbjct: 830 QGREKDFIILSCVRANEHQG------IGFLNDPRRLNVALTRARYGVIIVGNPKALSKQP 883
Query: 1157 CFGALLEY 1164
+ LL Y
Sbjct: 884 LWNHLLNY 891
>gi|156105693 PPAR-alpha interacting complex protein 285 isoform 1
[Homo sapiens]
Length = 2649
Score = 139 bits (351), Expect = 1e-32
Identities = 142/467 (30%), Positives = 217/467 (46%), Gaps = 47/467 (10%)
Query: 746 NENQKLAVKRILS---GDCRPLPYIL-FGPPGTGKTVTIIEAVLQVHFALPDSRILVCAP 801
N Q+LAV I GD R +P +L +GP GTGKT T+ A L+V P++++L+C
Sbjct: 516 NRKQELAVALIAGWGPGDGRRVPPLLIYGPFGTGKTYTLAMASLEV-IRRPETKVLICTH 574
Query: 802 SNSAADLVCLRLHESKVL---QPATMVRVNATCRFEEIVIDAVKPYCRDGEDIW------ 852
+NSAAD+ S V AT +RV T R YC +D
Sbjct: 575 TNSAADIYIREYFHSHVSGGHPEATPLRVMYTDRPLSQTDPVTLQYCCLTDDRQAFRPPT 634
Query: 853 --KASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQI 910
+ +R R+++TT S + ++ V VG F+H+ +DEA Q E E L PL S ++
Sbjct: 635 RAELARHRVVVTTTSQAR---ELRVPVGFFSHILIDEAAQMLECEALTPLAYASH-GTRL 690
Query: 911 VLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLV- 969
VLAGD MQ+ P + S +A A + L RL YQ++ H ++LV
Sbjct: 691 VLAGDHMQVTPRLFS-VARARAAEHTLLHRLFL--CYQQE--------THEVARQSRLVF 739
Query: 970 -KNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPK--KGFPLIFHGVRGSEA 1026
+NYR +A++ SR FY + +P K+P + +PL+F V GS
Sbjct: 740 HENYRCTDAIVSFISRHFYVAK----GNPIHARG-----KVPPHPRHYPLMFCHVAGSPD 790
Query: 1027 REGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVI--TPYRKQVEKIRILLRNVD 1084
R+ SW N AE QV+ ++ S + I + QV +R LR D
Sbjct: 791 RDMSMASWLNLAEIAQVVEKVQEAYNTWPSCWGGREQRCICVVSHGAQVSALRQELRRRD 850
Query: 1085 LMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLI 1144
L + VGS E G+++ V+++STV + + F ++++ N +TR ++ L+
Sbjct: 851 LGQVSVGSFEILPGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTRAQSQLV 910
Query: 1145 VLGNPHVLVRDPCFGALLEYSITNGVYMGCDLPPALQSLQNCGEGVA 1191
V+G+ L G L E I V P L S++ +GVA
Sbjct: 911 VVGDAVALCSFGACGKLWESFIRECVERHSVCPEGL-SMEQVEQGVA 956
Score = 131 bits (329), Expect = 4e-30
Identities = 145/507 (28%), Positives = 215/507 (42%), Gaps = 120/507 (23%)
Query: 745 LNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFA-------------- 790
LN +Q +AV+ L +P ++ GPPGTGKT+ + V H +
Sbjct: 2153 LNPSQNVAVREALE---KPFT-VIQGPPGTGKTIVGLHIVFWFHKSNQEQVQPGGPPRGE 2208
Query: 791 --LPDSRILVCAPSNSAADLVC---LRLHESKVLQ-----------PATMV--------- 825
L IL C PSN + D++ LR E K L+ P V
Sbjct: 2209 KRLGGPCILYCGPSNKSVDVLAGLLLRRMELKPLRVYSEQAEASEFPVPRVGSRKLLRKS 2268
Query: 826 ----RVNATCR---FEEIVIDAVKPYCRD---------------GEDI-------WKASR 856
R N + R + A PY + ED+ W+A +
Sbjct: 2269 PREGRPNQSLRSITLHHRIRQAPNPYSSEIKAFDTRLQRGELFSREDLVWYKKVLWEARK 2328
Query: 857 FR-----IIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIV 911
F +I+ TCS + +++ + VDEAG A+EPE LIPL + + ++V
Sbjct: 2329 FELDRHEVILCTCSCAA---SASLKILDVRQILVDEAGMATEPETLIPL-VQFPQAEKVV 2384
Query: 912 LAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKN 971
L GD QL PV+K+ GL+ S ER Y D AH L
Sbjct: 2385 LLGDHKQLRPVVKNERLQNLGLDRSLFER------YHED--------AH------MLDTQ 2424
Query: 972 YRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPKKGFPLIFHGVRGSEAR---- 1027
YR HE + PS FY +L+ S+LG K+ P+IF V+G E
Sbjct: 2425 YRMHEGICAFPSVAFYKSKLKTWQGLRRPPSVLG--HAGKESCPVIFGHVQGHERSLLVS 2482
Query: 1028 --EGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLRNVDL 1085
EG S N E +V+R L ++ V DI V+TPY Q +I LR +
Sbjct: 2483 TDEGNENSKANLEEVAEVVRITKQL--TLGRTVEPQDIAVLTPYNAQASEISKALRREGI 2540
Query: 1086 MDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDR-------YFLGFLSNSKRFNVAITR 1138
+ V S+ + QG E+ +++STVR+ D R FLGF+ + + NVA+TR
Sbjct: 2541 AGVAVSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTR 2600
Query: 1139 PKALLIVLGNPHVLVR-DPCFGALLEY 1164
+ L ++G+ H+L+R P + +LL++
Sbjct: 2601 AQEGLCLIGD-HLLLRCCPLWRSLLDF 2626
>gi|156105695 PPAR-alpha interacting complex protein 285 isoform 2
[Homo sapiens]
Length = 2080
Score = 131 bits (329), Expect = 4e-30
Identities = 145/507 (28%), Positives = 215/507 (42%), Gaps = 120/507 (23%)
Query: 745 LNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFA-------------- 790
LN +Q +AV+ L +P ++ GPPGTGKT+ + V H +
Sbjct: 1584 LNPSQNVAVREALE---KPFT-VIQGPPGTGKTIVGLHIVFWFHKSNQEQVQPGGPPRGE 1639
Query: 791 --LPDSRILVCAPSNSAADLVC---LRLHESKVLQ-----------PATMV--------- 825
L IL C PSN + D++ LR E K L+ P V
Sbjct: 1640 KRLGGPCILYCGPSNKSVDVLAGLLLRRMELKPLRVYSEQAEASEFPVPRVGSRKLLRKS 1699
Query: 826 ----RVNATCR---FEEIVIDAVKPYCRD---------------GEDI-------WKASR 856
R N + R + A PY + ED+ W+A +
Sbjct: 1700 PREGRPNQSLRSITLHHRIRQAPNPYSSEIKAFDTRLQRGELFSREDLVWYKKVLWEARK 1759
Query: 857 FR-----IIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIV 911
F +I+ TCS + +++ + VDEAG A+EPE LIPL + + ++V
Sbjct: 1760 FELDRHEVILCTCSCAA---SASLKILDVRQILVDEAGMATEPETLIPL-VQFPQAEKVV 1815
Query: 912 LAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKN 971
L GD QL PV+K+ GL+ S ER Y D AH L
Sbjct: 1816 LLGDHKQLRPVVKNERLQNLGLDRSLFER------YHED--------AH------MLDTQ 1855
Query: 972 YRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPKKGFPLIFHGVRGSEAR---- 1027
YR HE + PS FY +L+ S+LG K+ P+IF V+G E
Sbjct: 1856 YRMHEGICAFPSVAFYKSKLKTWQGLRRPPSVLG--HAGKESCPVIFGHVQGHERSLLVS 1913
Query: 1028 --EGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLRNVDL 1085
EG S N E +V+R L ++ V DI V+TPY Q +I LR +
Sbjct: 1914 TDEGNENSKANLEEVAEVVRITKQL--TLGRTVEPQDIAVLTPYNAQASEISKALRREGI 1971
Query: 1086 MDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDR-------YFLGFLSNSKRFNVAITR 1138
+ V S+ + QG E+ +++STVR+ D R FLGF+ + + NVA+TR
Sbjct: 1972 AGVAVSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTR 2031
Query: 1139 PKALLIVLGNPHVLVR-DPCFGALLEY 1164
+ L ++G+ H+L+R P + +LL++
Sbjct: 2032 AQEGLCLIGD-HLLLRCCPLWRSLLDF 2057
Score = 107 bits (267), Expect = 7e-23
Identities = 118/409 (28%), Positives = 182/409 (44%), Gaps = 42/409 (10%)
Query: 800 APSNSAADLVCLRLHESKVL---QPATMVRVNATCRFEEIVIDAVKPYCRDGEDIW---- 852
+PS SAAD+ S V AT +RV T R YC +D
Sbjct: 4 SPSRSAADIYIREYFHSHVSGGHPEATPLRVMYTDRPLSQTDPVTLQYCCLTDDRQAFRP 63
Query: 853 ----KASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISG 908
+ +R R+++TT S + ++ V VG F+H+ +DEA Q E E L PL S
Sbjct: 64 PTRAELARHRVVVTTTSQAR---ELRVPVGFFSHILIDEAAQMLECEALTPLAYASH-GT 119
Query: 909 QIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKL 968
++VLAGD MQ+ P + S +A A + L RL YQ++ H ++L
Sbjct: 120 RLVLAGDHMQVTPRLFS-VARARAAEHTLLHRLFL--CYQQE--------THEVARQSRL 168
Query: 969 V--KNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPK--KGFPLIFHGVRGS 1024
V +NYR +A++ SR FY + +P K+P + +PL+F V GS
Sbjct: 169 VFHENYRCTDAIVSFISRHFYVAK----GNPIHARG-----KVPPHPRHYPLMFCHVAGS 219
Query: 1025 EAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVI--TPYRKQVEKIRILLRN 1082
R+ SW N AE QV+ ++ S + I + QV +R LR
Sbjct: 220 PDRDMSMASWLNLAEIAQVVEKVQEAYNTWPSCWGGREQRCICVVSHGAQVSALRQELRR 279
Query: 1083 VDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKAL 1142
DL + VGS E G+++ V+++STV + + F ++++ N +TR ++
Sbjct: 280 RDLGQVSVGSFEILPGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTRAQSQ 339
Query: 1143 LIVLGNPHVLVRDPCFGALLEYSITNGVYMGCDLPPALQSLQNCGEGVA 1191
L+V+G+ L G L E I V P L S++ +GVA
Sbjct: 340 LVVVGDAVALCSFGACGKLWESFIRECVERHSVCPEGL-SMEQVEQGVA 387
>gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens]
Length = 993
Score = 123 bits (309), Expect = 9e-28
Identities = 146/531 (27%), Positives = 222/531 (41%), Gaps = 94/531 (17%)
Query: 738 MEFFNPVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRIL 797
+ FFN L+ +QK AV LS + I+ GPPGTGKT T++E +LQ ++L
Sbjct: 185 LTFFNTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQA--VKQGLKVL 239
Query: 798 VCAPSNSAADLVCLRL-----------HESKVL---QPATMVRVNATCRFEEIV------ 837
CAPSN A D + RL H +++L Q ++ V A +IV
Sbjct: 240 CCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKD 299
Query: 838 IDAVKPYCRDGEDIWKASRFRIIIT------------------TCSSSGLFYQIGVRV-- 877
ID V + +D + S FR I T ++ L G
Sbjct: 300 IDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADG 359
Query: 878 -------GHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLAMA 930
+F V +DE QA E C IPL + + +LAGD QL P S A
Sbjct: 360 PLKLLPESYFDVVVIDECAQALEASCWIPLLK----ARKCILAGDHKQLPPTTVSHKAAL 415
Query: 931 YGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRE 990
GL++S +ERL +GA +V L YR H+A++ S Y +
Sbjct: 416 AGLSLSLMERLAEE---------YGA------RVVRTLTVQYRMHQAIMRWASDTMYLGQ 460
Query: 991 LEVCADPT--VVTSLLGWEKLPKKGFPLIFHGVRGS---EAREGKSPSWFNPAEAVQVLR 1045
L + ++ L G + G PL+ G E E S NP E V
Sbjct: 461 LTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSL 520
Query: 1046 YCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLRNVDLMDIKVGSVEEFQGQEYLVII 1105
+ L + + V A DI V++PY QV+ +R L + ++++ SV+ FQG+E +I
Sbjct: 521 HIQAL---VDAGVPARDIAVVSPYNLQVDLLRQSLVHRH-PELEIKSVDGFQGREKEAVI 576
Query: 1106 ISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEYS 1165
+S VRSN + +GFL+ +R NVA+TR + + V+ + + L+EY
Sbjct: 577 LSFVRSNR------KGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYF 630
Query: 1166 ITNGVYMGC-----DLPP---ALQSLQNCGEGVADPSYPVVPESTGPEKHQ 1208
+G D+ P + ++ Q P P TG ++ +
Sbjct: 631 TQHGEVRTAFEYLDDIVPENYSHENSQGSSHAATKPQGPATSTRTGSQRQE 681
>gi|122937299 DNA replication helicase 2 homolog [Homo sapiens]
Length = 1146
Score = 112 bits (281), Expect = 2e-24
Identities = 122/435 (28%), Positives = 203/435 (46%), Gaps = 77/435 (17%)
Query: 745 LNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNS 804
LN+ Q+ A+K++L L + G PGTGKT TI V ++ +A S +L+ + ++S
Sbjct: 712 LNKPQRQAMKKVLLSKDYTL---IVGMPGTGKTTTICTLV-RILYACGFS-VLLTSYTHS 766
Query: 805 AADLVCLRLHESKV--LQPATMVRVNAT---------CRFEEIVIDAVKPYCRDGEDIWK 853
A D + L+L + K+ L+ + +V+ CR + I A+ E+++
Sbjct: 767 AVDNILLKLAKFKIGFLRLGQIQKVHPAIQQFTEQEICRSKSIKSLALL------EELYN 820
Query: 854 ASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLA 913
+ I+ TTC G+ + I R F VDEA Q S+P CL PL S + VL
Sbjct: 821 SQL--IVATTCM--GINHPIFSRK-IFDFCIVDEASQISQPICLGPLFF----SRRFVLV 871
Query: 914 GDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYR 973
GD QL P++ +R A A G++ S +RL N V +L YR
Sbjct: 872 GDHQQLPPLVLNREARALGMSESLFKRL-----------------EQNKSAVVQLTVQYR 914
Query: 974 SHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPKKGFPLIFHGVRGSE-----ARE 1028
+ ++ L ++L Y +LE C V +++ L F+ E
Sbjct: 915 MNSKIMSLSNKLTYEGKLE-CGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFE 973
Query: 1029 GKSPSWFNPAEAV---------------QVLRYCCLLAHSISSQVSASDIGVITPYRKQV 1073
+P F + V + L + + + S SDIG+I PYR+Q+
Sbjct: 974 PNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQL 1033
Query: 1074 EKIR-ILLRNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRF 1132
+ I +L R++ + ++V +V+++QG++ ++++S VRSN+D + L + +R
Sbjct: 1034 KIINDLLARSIGM--VEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGE-----LLKDWRRL 1086
Query: 1133 NVAITRPKALLIVLG 1147
NVAITR K LI+LG
Sbjct: 1087 NVAITRAKHKLILLG 1101
>gi|113722133 senataxin [Homo sapiens]
Length = 2677
Score = 102 bits (253), Expect = 3e-21
Identities = 97/323 (30%), Positives = 151/323 (46%), Gaps = 27/323 (8%)
Query: 859 IIITTCSSSGLFYQIGVRVGH---FTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGD 915
I T +S GL + R F+ V VDEAGQ+ E E L PL +++L GD
Sbjct: 2151 ICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPL---IHRCNKLILVGD 2207
Query: 916 PMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSH 975
P QL P + S A YG + S +M+R +EN + P+L +L YR H
Sbjct: 2208 PKQLPPTVISMKAQEYGYDQS----MMARFCRLLEENVEHNMISRLPIL--QLTVQYRMH 2261
Query: 976 EALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPKKGFPLIFHGVRGSEAREGKSPSWF 1035
+ + PS Y+R L+ + W P L+F GSE R+ + S+
Sbjct: 2262 PDICLFPSNYVYNRNLKTNRQTEAIRCSSDWPFQPY----LVFDVGDGSERRD--NDSYI 2315
Query: 1036 NPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKI-RILLRNVDLMD-IKVGSV 1093
N E V+ L+ VS +IG+IT Y+ Q I + L + D +V +V
Sbjct: 2316 NVQEIKLVMEIIKLIKDK-RKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTV 2374
Query: 1094 EEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLV 1153
+ FQG++ +I++ VR+N + +GFL++ +R NV ITR K L +LG+ L+
Sbjct: 2375 DAFQGRQKDCVIVTCVRANSIQGS-----IGFLASLQRLNVTITRAKYSLFILGHLRTLM 2429
Query: 1154 RDPCFGALLEYSITNG-VYMGCD 1175
+ + L++ + G + CD
Sbjct: 2430 ENQHWNQLIQDAQKRGAIIKTCD 2452
Score = 38.1 bits (87), Expect = 0.051
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 14/55 (25%)
Query: 767 ILFGPPGTGKTVTIIEAVLQV--------------HFALPDSRILVCAPSNSAAD 807
++ GPPGTGK+ TI+ + ++ + + +R+LVCAPSN+A D
Sbjct: 1960 LIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVD 2014
>gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens]
Length = 1918
Score = 68.2 bits (165), Expect = 5e-11
Identities = 74/284 (26%), Positives = 120/284 (42%), Gaps = 43/284 (15%)
Query: 883 VFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSR-LAMAYGLNVSFLERL 941
V V+EA + E + L S ++L GD QL P LA + L VS ERL
Sbjct: 1003 VIVEEAAEVLEAHTIATL---SKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERL 1059
Query: 942 MS-RPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVV 1000
+ + R C LL + ++ +H
Sbjct: 1060 VKVNIPFVRLNYQHRMCPEIARLLTPHIYQDLENHP------------------------ 1095
Query: 1001 TSLLGWEKLPKKGFPLIF--HGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQV 1058
S+L +EK+ L F H E +EGKS N EA V+ C + + +
Sbjct: 1096 -SVLKYEKIKGVSSNLFFVEHNFPEQEIQEGKSHQ--NQHEAHFVVELC---KYFLCQEY 1149
Query: 1059 SASDIGVITPYRKQVEKIRILLRNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFED 1118
S I ++T Y Q+ +R L+ ++V V+++QG+E +I++S VRSN++
Sbjct: 1150 LPSQITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEG--- 1206
Query: 1119 DRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALL 1162
+GFL S R VA++R K + +GN +L + P + ++
Sbjct: 1207 ---KVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKII 1247
>gi|38788372 aquarius [Homo sapiens]
Length = 1485
Score = 51.2 bits (121), Expect = 6e-06
Identities = 78/307 (25%), Positives = 122/307 (39%), Gaps = 55/307 (17%)
Query: 858 RIIITTCSSSGLFYQIGVRVGH-FTHVFVDEAGQASEPECLIPLGLMSDISG-----QIV 911
+II TC+ + L V++G + ++ ++EA Q E E IPL L + G + +
Sbjct: 1033 KIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWI 1092
Query: 912 LAGDPMQLGPVIKSRLAMAY-GLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVK 970
+ GD QL PVIK+ Y + S R + D +A G A L K
Sbjct: 1093 MIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNLYNWRYK 1152
Query: 971 NYRSHEALLMLP------SRLFYHRELEVCADPTVVTSLLGWEKLPKKGFPLIFHGVRGS 1024
N + + +LP + L Y +L D F GV S
Sbjct: 1153 NLGNLPHVQLLPEFSTANAGLLYDFQLINVED---------------------FQGVGES 1191
Query: 1025 EAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLR--- 1081
E + V + Y CLL + A I ++T Y Q IR ++
Sbjct: 1192 EPNPYFYQNLGEAEYVVALFMYMCLLGY------PADKISILTTYNGQKHLIRDIINRRC 1245
Query: 1082 -NVDLM--DIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITR 1138
N L+ KV +V+ FQGQ+ I++S VR+ +G L + +R VA++R
Sbjct: 1246 GNNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTRA---------VGHLRDVRRLVVAMSR 1296
Query: 1139 PKALLIV 1145
+ L +
Sbjct: 1297 ARLGLYI 1303
Score = 36.2 bits (82), Expect = 0.19
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 767 ILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSA 805
++ GPPGTGKT ++ + ++ P+ R L+ SN A
Sbjct: 820 MVVGPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQA 858
>gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]
Length = 4646
Score = 35.8 bits (81), Expect = 0.25
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 698 QAEHGTEERRVGDKDLPVL---------APFTAEMSDWVD-----EIQTPKARKMEFFNP 743
+AE G RR+ LP + E S W E++T K + P
Sbjct: 2511 RAELGEYIRRITTVPLPTAPNIPIIDYEVSISGEWSPWQAKVPQIEVETHKVAAPDVVVP 2570
Query: 744 VLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRIL 797
L+ + A+ + +PL +L GPPG+GKT+T+ A+ ALPD ++
Sbjct: 2571 TLDTVRHEALLYTWLAEHKPL--VLCGPPGSGKTMTLFSALR----ALPDMEVV 2618
>gi|14780902 membrane protein, palmitoylated 4 [Homo sapiens]
Length = 637
Score = 33.1 bits (74), Expect = 1.6
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 517 FQPLLAELLNMSNYKEKFSTLLWLEEIYAEMELKEYNMSGIILRRN---GDLLVLEV--P 571
F+PLL L + E+ ++ L +K G ++R+ GD+LV +
Sbjct: 134 FEPLLPPLPDNIPESEEAMRIVCL--------VKNQQPLGATIKRHEMTGDILVARIIHG 185
Query: 572 GLAEGRPSLYAGDKLILKTQEYNGHAIEYISYVTEIH 608
GLAE LYAGDKL+ E NG ++E + IH
Sbjct: 186 GLAERSGLLYAGDKLV----EVNGVSVEGLDPEQVIH 218
>gi|31563534 replication factor C 2 isoform 1 [Homo sapiens]
Length = 354
Score = 32.7 bits (73), Expect = 2.1
Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 22/250 (8%)
Query: 726 WVDEIQTPKARKMEFFNPVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTII-EAV 784
WV++ + K N ++ ++ + + + I+ GPPGTGKT +I+ A
Sbjct: 38 WVEKYRPVK------LNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLAR 91
Query: 785 LQVHFALPDSRILVCAPSNSAADLVCLRLH---ESKVLQPATMVRVNATCRFEEIVIDAV 841
+ AL D+ + + A ++ D+V ++ + KV P ++ + + A
Sbjct: 92 ALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 151
Query: 842 KPYCRDGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLG 901
+ R E K +RF + +S + I R + + +A I
Sbjct: 152 QALRRTMEIYSKTTRFALACN--ASDKIIEPIQSRCAVLRYTKLTDA--------QILTR 201
Query: 902 LMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHN 961
LM+ I + V D + ++ M LN L+ S + EN F C +
Sbjct: 202 LMNVIEKERVPYTDDGLEAIIFTAQGDMRQALN--NLQSTFSGFGFINSENVFKVCDEPH 259
Query: 962 PLLVTKLVKN 971
PLLV +++++
Sbjct: 260 PLLVKEMIQH 269
>gi|31881687 replication factor C 4 [Homo sapiens]
Length = 363
Score = 32.3 bits (72), Expect = 2.8
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 726 WVDEIQTPKARKMEFFNPVLNENQKLAVKRILSGDCRPLPYILF-GPPGTGKTVTIIEAV 784
WV++ + ++ F V+ +K+ L G LP +LF GPPGTGKT TI+ A
Sbjct: 40 WVEKYRPKCVDEVAFQEEVV-----AVLKKSLEG--ADLPNLLFYGPPGTGKTSTILAAA 92
Query: 785 LQV 787
++
Sbjct: 93 REL 95
>gi|4506491 replication factor C 4 [Homo sapiens]
Length = 363
Score = 32.3 bits (72), Expect = 2.8
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 726 WVDEIQTPKARKMEFFNPVLNENQKLAVKRILSGDCRPLPYILF-GPPGTGKTVTIIEAV 784
WV++ + ++ F V+ +K+ L G LP +LF GPPGTGKT TI+ A
Sbjct: 40 WVEKYRPKCVDEVAFQEEVV-----AVLKKSLEG--ADLPNLLFYGPPGTGKTSTILAAA 92
Query: 785 LQV 787
++
Sbjct: 93 REL 95
>gi|194306571 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 32.0 bits (71), Expect = 3.7
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 764 LPYIL-FGPPGTGKTVTIIEAVLQVH 788
LP++L +GPPGTGKT TI+ Q++
Sbjct: 32 LPHLLLYGPPGTGKTSTILACAKQLY 57
>gi|194306567 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 32.0 bits (71), Expect = 3.7
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 764 LPYIL-FGPPGTGKTVTIIEAVLQVH 788
LP++L +GPPGTGKT TI+ Q++
Sbjct: 32 LPHLLLYGPPGTGKTSTILACAKQLY 57
>gi|6677723 replication factor C 5 isoform 1 [Homo sapiens]
Length = 340
Score = 32.0 bits (71), Expect = 3.7
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 764 LPYIL-FGPPGTGKTVTIIEAVLQVH 788
LP++L +GPPGTGKT TI+ Q++
Sbjct: 53 LPHLLLYGPPGTGKTSTILACAKQLY 78
>gi|28882049 replication factor C 2 isoform 2 [Homo sapiens]
Length = 320
Score = 31.6 bits (70), Expect = 4.8
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 726 WVDEIQTPKARKMEFFNPVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTII-EAV 784
WV++ + K N ++ ++ + + + I+ GPPGTGKT +I+ A
Sbjct: 38 WVEKYRPVK------LNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLAR 91
Query: 785 LQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPATMVRVNATCRFEEIVIDAVKPY 844
+ AL D+ + + A ++S D L + + T R C + +I+ ++
Sbjct: 92 ALLGPALKDAMLELNASNDSMTDGAQQALRRTMEIYSKT-TRFALACNASDKIIEPIQSR 150
Query: 845 C 845
C
Sbjct: 151 C 151
>gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Homo
sapiens]
Length = 544
Score = 31.6 bits (70), Expect = 4.8
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 326 DQMCPVVSFVSVPEKENSSDENINSLNSHTKNKTSQMSESSLVNNRGISPGDCTCKGENG 385
D M + +S+P + SD +N +NS K SSL N + ENG
Sbjct: 130 DDMISTLKKISIPVDISDSDMMLNIINSSITTKAIS-RWSSLACNIALDAVKMVQFEENG 188
Query: 386 EKDNILSRKQMTEPEPGGLV 405
K+ + + E PGG++
Sbjct: 189 RKEIDIKKYARVEKIPGGII 208
>gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Homo
sapiens]
Length = 507
Score = 31.6 bits (70), Expect = 4.8
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 326 DQMCPVVSFVSVPEKENSSDENINSLNSHTKNKTSQMSESSLVNNRGISPGDCTCKGENG 385
D M + +S+P + SD +N +NS K SSL N + ENG
Sbjct: 93 DDMISTLKKISIPVDISDSDMMLNIINSSITTKAIS-RWSSLACNIALDAVKMVQFEENG 151
Query: 386 EKDNILSRKQMTEPEPGGLV 405
K+ + + E PGG++
Sbjct: 152 RKEIDIKKYARVEKIPGGII 171
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,341,679
Number of Sequences: 37866
Number of extensions: 2172982
Number of successful extensions: 5301
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5153
Number of HSP's gapped (non-prelim): 67
length of query: 1211
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1097
effective length of database: 13,930,794
effective search space: 15282081018
effective search space used: 15282081018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.