Guide to the Human Genome
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Name: RFC5 Sequence: fasta or formatted (319aa) NCBI GI: 194306567
Description:

replication factor C 5 isoform 2

Referenced in:

Replication Proteins

Other entries for this name:
alt prot [255aa] replication factor C 5 isoform 3
alt mRNA [319aa] replication factor C 5 isoform 2
alt prot [340aa] replication factor C 5 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         20           2
 C cysteine            1.6          5           1
 D aspartate           6.3         20           2
 E glutamate           6.3         20           3
 F phenylalanine       4.4         14           1
 G glycine             4.4         14           1
 H histidine           2.5          8           1
 I isoleucine          8.5         27           2
 K lysine              6.0         19           2
 L leucine            12.5         40           3
 M methionine          2.8          9           1
 N asparagine          3.8         12           1
 P proline             3.4         11           2
 Q glutamine           3.4         11           1
 R arginine            6.0         19           2
 S serine              6.0         19           2
 T threonine           8.2         26           2
 V valine              5.3         17           2
 W tryptophan          0.3          1           1
 Y tyrosine            2.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   replication factor C 5 isoform 2 
RFC5                  1.000   replication factor C 5 isoform 2 
RFC5                  0.997   replication factor C 5 isoform 1 
RFC5                  0.786   replication factor C 5 isoform 3 
RFC4                  0.307   replication factor C 4 
RFC4                  0.307   replication factor C 4 
RFC2                  0.306   replication factor C 2 isoform 1 
RFC2                  0.228   replication factor C 2 isoform 2 
RFC3                  0.125   replication factor C 3 isoform 2 
RFC3                  0.125   replication factor C 3 isoform 1 
CHTF18                0.043   CTF18, chromosome transmission fidelity factor 18 ho...
RFC1                  0.042   replication factor C large subunit 
WRNIP1                0.038   Werner helicase interacting protein isoform 1 
RAD17                 0.035   RAD17 homolog isoform 1 
RAD17                 0.035   RAD17 homolog isoform 1 
RAD17                 0.035   RAD17 homolog isoform 1 
RAD17                 0.035   RAD17 homolog isoform 1 
RAD17                 0.035   RAD17 homolog isoform 1 
RAD17                 0.035   RAD17 homolog isoform 2 
WRNIP1                0.030   Werner helicase interacting protein isoform 2 
CDC6                  0.020   cell division cycle 6 protein 
PSMC3                 0.020   proteasome 26S ATPase subunit 3 
ATAD3C                0.020   ATPase family, AAA domain containing 3C 
ATAD5                 0.018   ATPase family, AAA domain containing 5 
BCS1L                 0.017   BCS1-like 
BCS1L                 0.017   BCS1-like 
ATAD3B                0.017   AAA-ATPase  TOB3 
LONP2                 0.015   peroxisomal LON protease-like 
ATAD3A                0.015   ATPase family, AAA domain containing 3A 
SPATA5L1              0.013   spermatogenesis associated 5-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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