Guide to the Human Genome
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Name: LOC728470 Sequence: fasta or formatted (224aa) NCBI GI: 239746940
Description:

PREDICTED: similar to hCG1736317 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {235aa} PREDICTED: similar to hCG1736317
alt prot {242aa} PREDICTED: similar to hCG1736317 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          7           1
 C cysteine            1.8          4           1
 D aspartate           7.1         16           2
 E glutamate           4.0          9           2
 F phenylalanine       5.4         12           2
 G glycine             5.8         13           1
 H histidine           1.8          4           1
 I isoleucine          8.0         18           2
 K lysine              5.8         13           1
 L leucine             6.2         14           2
 M methionine          1.3          3           1
 N asparagine          4.0          9           1
 P proline             4.9         11           1
 Q glutamine           2.7          6           1
 R arginine            4.5         10           2
 S serine              8.5         19           2
 T threonine           5.8         13           2
 V valine             14.7         33           3
 W tryptophan          0.9          2           1
 Y tyrosine            3.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1736317 isoform 2 
LOC728470             0.974   PREDICTED: similar to hCG1736317 isoform 1 
LOC728470             0.939   PREDICTED: similar to hCG1736317 
CXorf48               0.748   hypothetical protein LOC54967 isoform 1 
CXorf48               0.748   hypothetical protein LOC54967 isoform 2 
LOC650024             0.729   PREDICTED: similar to chromosome X open reading fra...
LOC650024             0.729   PREDICTED: similar to chromosome X open reading fra...
MOV10L1               0.431   MOV10-like 1 
KIAA1967              0.026   p30 DBC protein 
KIAA1967              0.026   p30 DBC protein 
CCAR1                 0.014   cell-cycle and apoptosis regulatory protein 1 
ENPEP                 0.009   glutamyl aminopeptidase 
SLC27A2               0.007   solute carrier family 27 (fatty acid transporter), ...
SLC27A2               0.007   solute carrier family 27 (fatty acid transporter), ...
PROKR1                0.007   G protein-coupled receptor 73 
SEC23IP               0.007   Sec23-interacting protein p125 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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