Guide to the Human Genome
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Name: CXorf48 Sequence: fasta or formatted (242aa) NCBI GI: 8923493
Description:

hypothetical protein LOC54967 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {264aa} hypothetical protein LOC54967 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          9           1
 C cysteine            2.1          5           1
 D aspartate           6.6         16           2
 E glutamate           5.0         12           2
 F phenylalanine       3.7          9           2
 G glycine             7.9         19           1
 H histidine           2.1          5           1
 I isoleucine          9.1         22           1
 K lysine              3.7          9           1
 L leucine             6.2         15           2
 M methionine          1.2          3           1
 N asparagine          3.3          8           1
 P proline             5.4         13           1
 Q glutamine           4.1         10           3
 R arginine            4.1         10           1
 S serine              7.9         19           2
 T threonine           6.2         15           2
 V valine             12.8         31           3
 W tryptophan          0.4          1           1
 Y tyrosine            4.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54967 isoform 2 
CXorf48               1.000   hypothetical protein LOC54967 isoform 1 
LOC728470             0.775   PREDICTED: similar to hCG1736317 isoform 1 
LOC650024             0.717   PREDICTED: similar to chromosome X open reading fra...
LOC650024             0.717   PREDICTED: similar to chromosome X open reading fra...
LOC728470             0.687   PREDICTED: similar to hCG1736317 isoform 2 
LOC728470             0.674   PREDICTED: similar to hCG1736317 
MOV10L1               0.462   MOV10-like 1 
KIAA1967              0.026   p30 DBC protein 
KIAA1967              0.026   p30 DBC protein 
CCAR1                 0.022   cell-cycle and apoptosis regulatory protein 1 
LOC100294468          0.011   PREDICTED: similar to HLA class II histocompatibili...
KCNU1                 0.006   potassium channel, subfamily U, member 1 
ADAMTS15              0.006   a disintegrin-like and metalloprotease (reprolysin t...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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