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Search of human proteins with 14249388
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 384 e-107
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 179 9e-46
gi|24497589 aristaless related homeobox [Homo sapiens] 118 3e-27
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 108 3e-24
gi|46249382 paired-like homeobox 2a [Homo sapiens] 108 3e-24
gi|57232759 intestine-specific homeobox [Homo sapiens] 105 2e-23
gi|7706659 paired related homeobox 2 [Homo sapiens] 105 3e-23
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 103 6e-23
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 103 6e-23
gi|12707580 paired-like homeobox 2b [Homo sapiens] 102 1e-22
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens] 101 4e-22
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 101 4e-22
gi|34365783 visual system homeobox 2 [Homo sapiens] 100 7e-22
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 100 7e-22
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 99 2e-21
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 99 2e-21
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 99 2e-21
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 99 2e-21
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 99 2e-21
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 99 2e-21
gi|122937321 UNC homeobox [Homo sapiens] 99 3e-21
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 98 5e-21
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 98 5e-21
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 98 5e-21
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 97 6e-21
gi|14149760 orthopedia homeobox [Homo sapiens] 97 6e-21
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 97 8e-21
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 96 1e-20
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 96 1e-20
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 96 1e-20
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 384 bits (987), Expect = e-107
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MFLSPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREEL 60
MFLSPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREEL
Sbjct: 1 MFLSPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREEL 60
Query: 61 AAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEP 120
AAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEP
Sbjct: 61 AAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEP 120
Query: 121 WLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRA 180
WLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRA
Sbjct: 121 WLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRA 180
Query: 181 WPPA 184
WPPA
Sbjct: 181 WPPA 184
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 179 bits (455), Expect = 9e-46
Identities = 116/243 (47%), Positives = 133/243 (54%), Gaps = 71/243 (29%)
Query: 5 PGEGPATEGGGLGPG--------EEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYS 56
PGE + G +GP EE PKKKHRRNRTTFTTYQLH+LERAFE SHYPDVYS
Sbjct: 106 PGEARPSPGLPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS 165
Query: 57 REELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAM-- 114
REELA KV+LPEVRVQVWFQNRRAKWRRQE+LE V++ +L ++P L F+R P
Sbjct: 166 REELAGKVNLPEVRVQVWFQNRRAKWRRQEKLE-----VSSMKLQDSPLLSFSRSPPSAT 220
Query: 115 -----------------SLPLEPWLGP----------------GPPA----------VPG 131
+LPLE WLGP GPPA P
Sbjct: 221 LSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPP 280
Query: 132 LPRLLGP--GPGLQASFGP---HAFAPTFADGFALEE--------ASLRLLAKEHAQALD 178
P L P GPGLQ P + P F D F L+E A+LRL AKEH QA+
Sbjct: 281 PPFLNSPPLGPGLQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEHIQAIG 340
Query: 179 RAW 181
+ W
Sbjct: 341 KPW 343
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 118 bits (295), Expect = 3e-27
Identities = 65/129 (50%), Positives = 81/129 (62%), Gaps = 11/129 (8%)
Query: 6 GEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVH 65
GE G E K+K RR RTTFT+YQL +LERAF+ +HYPDV++REELA ++
Sbjct: 307 GEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLD 366
Query: 66 LPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWL--G 123
L E RVQVWFQNRRAKWR++E+ +GA P P LPF P + + PL P+L
Sbjct: 367 LTEARVQVWFQNRRAKWRKREK----AGAQTHP-----PGLPFPGPLSATHPLSPYLDAS 417
Query: 124 PGPPAVPGL 132
P PP P L
Sbjct: 418 PFPPHHPAL 426
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 108 bits (270), Expect = 3e-24
Identities = 61/135 (45%), Positives = 77/135 (57%), Gaps = 5/135 (3%)
Query: 21 EAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRA 80
E+ K K RRNRTTFT+YQL +LE+ F+ +HYPDVY+RE+LA + L E RVQVWFQNRRA
Sbjct: 208 ESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRA 267
Query: 81 KWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLE--PWLGPGPPAVPGLPRLLGP 138
KWR++ER G A LP ++ WLG A P +P + P
Sbjct: 268 KWRKRERF--GQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASP-VPACVVP 324
Query: 139 GPGLQASFGPHAFAP 153
+ A PHA P
Sbjct: 325 CDPVPACMSPHAHPP 339
Score = 28.9 bits (63), Expect = 2.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 88 LESGSGAVAA-PRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGL 132
LESG+GA + + P+ P +PP P + P PPA P L
Sbjct: 77 LESGAGARGSFNKFQPQPSTPQPQPPPQPQPQQQQPQPQPPAQPHL 122
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 108 bits (269), Expect = 3e-24
Identities = 66/149 (44%), Positives = 75/149 (50%), Gaps = 39/149 (26%)
Query: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83
K+K RR RTTFT+ QL +LER F +HYPD+Y+REELA K+ L E RVQVWFQNRRAK+R
Sbjct: 87 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 146
Query: 84 RQERLESGSGAVAA-----------------------------PRLPEAPALPFARPPAM 114
+QER S GA A LP PA A P
Sbjct: 147 KQERAASAKGAAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLS 206
Query: 115 SLPLEPWLGPGPPAVPGLPRLLGPGPGLQ 143
PL LG GP GPGPG Q
Sbjct: 207 PSPLPVALGSGP----------GPGPGPQ 225
>gi|57232759 intestine-specific homeobox [Homo sapiens]
Length = 245
Score = 105 bits (262), Expect = 2e-23
Identities = 57/108 (52%), Positives = 76/108 (70%), Gaps = 9/108 (8%)
Query: 5 PGEGPATEGGGLGPGEEAP---KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELA 61
PGE A+ G P ++ P +K RR RTTFTT QLH+LE+ F +HYPDV+ R +LA
Sbjct: 57 PGEAAASGSGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLA 116
Query: 62 AKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAP-RLPEAP-ALP 107
A+++LPE RVQ+WFQN+RAKWR+QE++ G + AP +L EA ALP
Sbjct: 117 ARINLPEARVQIWFQNQRAKWRKQEKI----GNLGAPQQLSEASVALP 160
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 105 bits (261), Expect = 3e-23
Identities = 78/176 (44%), Positives = 89/176 (50%), Gaps = 32/176 (18%)
Query: 4 SPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAK 63
SPG G A + KKK RRNRTTF + QL LER FE +HYPD + REELA +
Sbjct: 91 SPGRGSAAKR----------KKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARR 140
Query: 64 VHLPEVRVQVWFQNRRAKWRRQER--LESGSGAVAAPRLPEA----PALPFARPPAMSLP 117
V+L E RVQVWFQNRRAK+RR ER L S S ++ EA P P RP A+S
Sbjct: 141 VNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLKSYSQEAAIEQPVAP--RPTALSPD 198
Query: 118 LEPWLGPGP-PAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKE 172
W P VP P S GP A+ ASLRL AKE
Sbjct: 199 YLSWTASSPYSTVP---------PYSPGSSGPATPGVNMANSI----ASLRLKAKE 241
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 103 bits (258), Expect = 6e-23
Identities = 57/119 (47%), Positives = 72/119 (60%), Gaps = 9/119 (7%)
Query: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83
K K RRNRTTF+T+QL +LE+ F+ +HYPDVY+RE+LA + L E RVQVWFQNRRAKWR
Sbjct: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
Query: 84 RQERLESGSGAVAAPRLPEAPALPFARPPAM----SLPLEPWLGPGPPAVPGLPRLLGP 138
++ER G + R P A + P L W PG + PG P L+ P
Sbjct: 210 KRERY----GKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGS-PGGPCLVSP 263
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 103 bits (258), Expect = 6e-23
Identities = 64/162 (39%), Positives = 80/162 (49%), Gaps = 39/162 (24%)
Query: 5 PGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKV 64
P EGP T G P ++ RR RT FT +QL +LE F+ S YPDV +RE LAA++
Sbjct: 123 PAEGPQTAEG------PQPPERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARL 176
Query: 65 HLPEVRVQVWFQNRRAKWRRQER-----------------LESGSGAVAA---------- 97
+L E RVQVWFQNRRAKW+R +R + G AA
Sbjct: 177 NLTEDRVQVWFQNRRAKWKRNQRVLMLRNTATADLAHPLDMFLGGAYYAAPALDPALCVH 236
Query: 98 --PRLPEAPALPF----ARPPAMSLPLEPWLGPGPPAVPGLP 133
P+LP P LP RPP + +P P + P PP P P
Sbjct: 237 LVPQLPRPPVLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPP 278
Score = 30.0 bits (66), Expect = 1.2
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 99 RLPEAPALPFAR----PPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAP 153
R+P P P AR PP LP P + P PP P P L PGP + A P + P
Sbjct: 329 RVPPGP--PMARVPPGPPMAPLPPGPPMAPLPPGPPMAP--LPPGPPM-APLPPRSHVP 382
Score = 27.7 bits (60), Expect = 5.8
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 93 GAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGL 142
G AP P P P P P+ P L PGPP P PR P GL
Sbjct: 342 GPPMAPLPPGPPMAPLPPGP----PMAP-LPPGPPMAPLPPRSHVPHTGL 386
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 102 bits (255), Expect = 1e-22
Identities = 73/194 (37%), Positives = 92/194 (47%), Gaps = 26/194 (13%)
Query: 11 TEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVR 70
T+ GGL K+K RR RTTFT+ QL +LER F +HYPD+Y+REELA K+ L E R
Sbjct: 87 TDHGGLNE-----KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEAR 141
Query: 71 VQVWFQNRRAKWRRQERLESGSGAVA---APRLPEAPALPFARPPAMSLPLEPWLGPGP- 126
VQVWFQNRRAK+R+QER + + A A + + A S + GPGP
Sbjct: 142 VQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPN 201
Query: 127 ----------------PAVPGLPRLLGP-GPGLQASFGPHAFAPTFADGFALEEASLRLL 169
P+ G P GP GPG + G A A A A A+
Sbjct: 202 PNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAG 261
Query: 170 AKEHAQALDRAWPP 183
A + W P
Sbjct: 262 GLAAAGGPGQGWAP 275
>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
Length = 365
Score = 101 bits (251), Expect = 4e-22
Identities = 45/73 (61%), Positives = 57/73 (78%)
Query: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83
K+K RR+RT FT +QL +LE+AF +HYPDVY+RE LA K LPE R+QVWFQNRRAKWR
Sbjct: 161 KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWR 220
Query: 84 RQERLESGSGAVA 96
++E+ GS +A
Sbjct: 221 KREKRWGGSSVMA 233
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 101 bits (251), Expect = 4e-22
Identities = 60/125 (48%), Positives = 69/125 (55%), Gaps = 15/125 (12%)
Query: 20 EEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRR 79
EE K+K RRNRTTF + QL LER FE +HYPD + RE+LA +V+L E RVQVWFQNRR
Sbjct: 87 EEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRR 146
Query: 80 AKWRRQER----------LESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAV 129
AK+RR ER L+S SG V A P P RP W P
Sbjct: 147 AKFRRNERAMLANKNASLLKSYSGDVTAVEQPIVP-----RPAPRPTDYLSWGTASPYRS 201
Query: 130 PGLPR 134
LPR
Sbjct: 202 SSLPR 206
>gi|34365783 visual system homeobox 2 [Homo sapiens]
Length = 361
Score = 100 bits (249), Expect = 7e-22
Identities = 45/76 (59%), Positives = 58/76 (76%)
Query: 21 EAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRA 80
+ K+K RR+RT FT+YQL +LE+AF +HYPDVY+RE LA K LPE R+QVWFQNRRA
Sbjct: 142 QTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRA 201
Query: 81 KWRRQERLESGSGAVA 96
KWR++E+ S +A
Sbjct: 202 KWRKREKCWGRSSVMA 217
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 100 bits (249), Expect = 7e-22
Identities = 56/102 (54%), Positives = 65/102 (63%), Gaps = 11/102 (10%)
Query: 20 EEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRR 79
EE K+K RRNRTTF + QL LER FE +HYPD + RE+LA +V+L E RVQVWFQNRR
Sbjct: 87 EEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRR 146
Query: 80 AKWRRQER----------LESGSGAVAAPRLPEAPALPFARP 111
AK+RR ER L+S SG V A P P P RP
Sbjct: 147 AKFRRNERAMLANKNASLLKSYSGDVTAVEQPIVPR-PAPRP 187
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 99.0 bits (245), Expect = 2e-21
Identities = 58/131 (44%), Positives = 72/131 (54%), Gaps = 16/131 (12%)
Query: 12 EGGGLGPGEEAP-KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVR 70
EG + + P K+K RR+RTTFT QL +LERAFE +HYPD+Y+REELA + L E R
Sbjct: 202 EGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEAR 261
Query: 71 VQVWFQNRRAKWRRQ----------ERLESGSGAVAAPRLP-----EAPALPFARPPAMS 115
VQVWF NRRA+WR+Q + G A P LP E P + P A+S
Sbjct: 262 VQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVS 321
Query: 116 LPLEPWLGPGP 126
P P P
Sbjct: 322 DPSSTVHRPQP 332
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 99.0 bits (245), Expect = 2e-21
Identities = 58/131 (44%), Positives = 72/131 (54%), Gaps = 16/131 (12%)
Query: 12 EGGGLGPGEEAP-KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVR 70
EG + + P K+K RR+RTTFT QL +LERAFE +HYPD+Y+REELA + L E R
Sbjct: 203 EGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEAR 262
Query: 71 VQVWFQNRRAKWRRQ----------ERLESGSGAVAAPRLP-----EAPALPFARPPAMS 115
VQVWF NRRA+WR+Q + G A P LP E P + P A+S
Sbjct: 263 VQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVS 322
Query: 116 LPLEPWLGPGP 126
P P P
Sbjct: 323 DPSSTVHRPQP 333
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 99.0 bits (245), Expect = 2e-21
Identities = 58/131 (44%), Positives = 72/131 (54%), Gaps = 16/131 (12%)
Query: 12 EGGGLGPGEEAP-KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVR 70
EG + + P K+K RR+RTTFT QL +LERAFE +HYPD+Y+REELA + L E R
Sbjct: 203 EGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEAR 262
Query: 71 VQVWFQNRRAKWRRQ----------ERLESGSGAVAAPRLP-----EAPALPFARPPAMS 115
VQVWF NRRA+WR+Q + G A P LP E P + P A+S
Sbjct: 263 VQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVS 322
Query: 116 LPLEPWLGPGP 126
P P P
Sbjct: 323 DPSSTVHRPQP 333
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 99.0 bits (245), Expect = 2e-21
Identities = 58/131 (44%), Positives = 72/131 (54%), Gaps = 16/131 (12%)
Query: 12 EGGGLGPGEEAP-KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVR 70
EG + + P K+K RR+RTTFT QL +LERAFE +HYPD+Y+REELA + L E R
Sbjct: 203 EGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEAR 262
Query: 71 VQVWFQNRRAKWRRQ----------ERLESGSGAVAAPRLP-----EAPALPFARPPAMS 115
VQVWF NRRA+WR+Q + G A P LP E P + P A+S
Sbjct: 263 VQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVS 322
Query: 116 LPLEPWLGPGP 126
P P P
Sbjct: 323 DPSSTVHRPQP 333
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 99.0 bits (245), Expect = 2e-21
Identities = 58/131 (44%), Positives = 72/131 (54%), Gaps = 16/131 (12%)
Query: 12 EGGGLGPGEEAP-KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVR 70
EG + + P K+K RR+RTTFT QL +LERAFE +HYPD+Y+REELA + L E R
Sbjct: 203 EGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEAR 262
Query: 71 VQVWFQNRRAKWRRQ----------ERLESGSGAVAAPRLP-----EAPALPFARPPAMS 115
VQVWF NRRA+WR+Q + G A P LP E P + P A+S
Sbjct: 263 VQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVS 322
Query: 116 LPLEPWLGPGP 126
P P P
Sbjct: 323 DPSSTVHRPQP 333
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 99.0 bits (245), Expect = 2e-21
Identities = 58/131 (44%), Positives = 72/131 (54%), Gaps = 16/131 (12%)
Query: 12 EGGGLGPGEEAP-KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVR 70
EG + + P K+K RR+RTTFT QL +LERAFE +HYPD+Y+REELA + L E R
Sbjct: 203 EGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEAR 262
Query: 71 VQVWFQNRRAKWRRQ----------ERLESGSGAVAAPRLP-----EAPALPFARPPAMS 115
VQVWF NRRA+WR+Q + G A P LP E P + P A+S
Sbjct: 263 VQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVS 322
Query: 116 LPLEPWLGPGP 126
P P P
Sbjct: 323 DPSSTVHRPQP 333
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 98.6 bits (244), Expect = 3e-21
Identities = 46/79 (58%), Positives = 57/79 (72%)
Query: 18 PGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQN 77
P +E+P K RR RT FT +QL +LE+AF SHYPDV+ RE LA ++ L E RVQVWFQN
Sbjct: 96 PDKESPGCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQN 155
Query: 78 RRAKWRRQERLESGSGAVA 96
RRAKWR++E + G G A
Sbjct: 156 RRAKWRKKENTKKGPGRPA 174
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 97.8 bits (242), Expect = 5e-21
Identities = 42/67 (62%), Positives = 55/67 (82%)
Query: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83
K+K +RNRT+FT Q+ LE+ FE +HYPDV++RE LAAK+ LPE R+QVWF NRRAKWR
Sbjct: 207 KRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWR 266
Query: 84 RQERLES 90
R+E+L +
Sbjct: 267 REEKLRN 273
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 97.8 bits (242), Expect = 5e-21
Identities = 42/67 (62%), Positives = 55/67 (82%)
Query: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83
K+K +RNRT+FT Q+ LE+ FE +HYPDV++RE LAAK+ LPE R+QVWF NRRAKWR
Sbjct: 221 KRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWR 280
Query: 84 RQERLES 90
R+E+L +
Sbjct: 281 REEKLRN 287
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 97.8 bits (242), Expect = 5e-21
Identities = 42/67 (62%), Positives = 55/67 (82%)
Query: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83
K+K +RNRT+FT Q+ LE+ FE +HYPDV++RE LAAK+ LPE R+QVWF NRRAKWR
Sbjct: 207 KRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWR 266
Query: 84 RQERLES 90
R+E+L +
Sbjct: 267 REEKLRN 273
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 97.4 bits (241), Expect = 6e-21
Identities = 58/152 (38%), Positives = 83/152 (54%), Gaps = 15/152 (9%)
Query: 5 PGEGPATEGGG--LGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAA 62
P + P +GG G++ ++K +R+RT FT QL++LER+F +HYPD++ REELA
Sbjct: 80 PDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELAL 139
Query: 63 KVHLPEVRVQVWFQNRRAKWRRQER----LESGSGAVAAPRLPEAPALPFARPPAMSLPL 118
++ L E RVQVWFQNRRAKW+++++ + + P LP+ P+ A AM L
Sbjct: 140 RIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSL 199
Query: 119 -------EPWLGPGPPAVPGLPRLLGPGPGLQ 143
W P V LP L P G Q
Sbjct: 200 CSFHANDTRWAAAAMPGVSQLP--LPPALGRQ 229
>gi|14149760 orthopedia homeobox [Homo sapiens]
Length = 325
Score = 97.4 bits (241), Expect = 6e-21
Identities = 58/152 (38%), Positives = 83/152 (54%), Gaps = 15/152 (9%)
Query: 5 PGEGPATEGGG--LGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAA 62
P + P +GG G++ ++K +R+RT FT QL++LER+F +HYPD++ REELA
Sbjct: 80 PDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELAL 139
Query: 63 KVHLPEVRVQVWFQNRRAKWRRQER----LESGSGAVAAPRLPEAPALPFARPPAMSLPL 118
++ L E RVQVWFQNRRAKW+++++ + + P LP+ P+ A AM L
Sbjct: 140 RIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSL 199
Query: 119 -------EPWLGPGPPAVPGLPRLLGPGPGLQ 143
W P V LP L P G Q
Sbjct: 200 CSFHANDTRWAAAAMPGVSQLP--LPPALGRQ 229
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 97.1 bits (240), Expect = 8e-21
Identities = 53/105 (50%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83
++K RRNRTTFT QL LE F +HYPDV++REELA K++L E RVQVWFQNRRAKWR
Sbjct: 35 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94
Query: 84 RQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPA 128
+ ER S + P A P PP ++ P PG A
Sbjct: 95 KTER--GASDQEPGAKEPMAEVTP---PPVRNINSPP---PGDQA 131
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 96.3 bits (238), Expect = 1e-20
Identities = 54/114 (47%), Positives = 70/114 (61%), Gaps = 9/114 (7%)
Query: 12 EGGGLGPGEEAP-KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVR 70
EG + + P K+K RR+RTTFT QL +LE+AFE +HYPD+Y+REELA + L E R
Sbjct: 201 EGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEAR 260
Query: 71 VQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGP 124
VQVWF NRRA+WR+Q +G+ +AA LP PP L P+ P
Sbjct: 261 VQVWFSNRRARWRKQ----AGANQLAAFN----HLLPGGFPPTGMPTLPPYQLP 306
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 96.3 bits (238), Expect = 1e-20
Identities = 54/114 (47%), Positives = 70/114 (61%), Gaps = 9/114 (7%)
Query: 12 EGGGLGPGEEAP-KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVR 70
EG + + P K+K RR+RTTFT QL +LE+AFE +HYPD+Y+REELA + L E R
Sbjct: 199 EGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEAR 258
Query: 71 VQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGP 124
VQVWF NRRA+WR+Q +G+ +AA LP PP L P+ P
Sbjct: 259 VQVWFSNRRARWRKQ----AGANQLAAFN----HLLPGGFPPTGMPTLPPYQLP 304
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 96.3 bits (238), Expect = 1e-20
Identities = 54/114 (47%), Positives = 70/114 (61%), Gaps = 9/114 (7%)
Query: 12 EGGGLGPGEEAP-KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVR 70
EG + + P K+K RR+RTTFT QL +LE+AFE +HYPD+Y+REELA + L E R
Sbjct: 201 EGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEAR 260
Query: 71 VQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGP 124
VQVWF NRRA+WR+Q +G+ +AA LP PP L P+ P
Sbjct: 261 VQVWFSNRRARWRKQ----AGANQLAAFN----HLLPGGFPPTGMPTLPPYQLP 306
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,011,237
Number of Sequences: 37866
Number of extensions: 610918
Number of successful extensions: 6342
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 481
Number of HSP's that attempted gapping in prelim test: 4117
Number of HSP's gapped (non-prelim): 2406
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.