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Search of human proteins with 14249190
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]
(211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens] 449 e-127
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] 197 4e-51
gi|55770830 chromobox homolog 4 [Homo sapiens] 111 4e-25
gi|10190682 chromobox homolog 8 [Homo sapiens] 108 4e-24
gi|46852392 chromobox homolog 6 [Homo sapiens] 106 1e-23
gi|28372505 chromobox homolog 7 [Homo sapiens] 102 3e-22
gi|188035910 heterochromatin protein 1-alpha [Homo sapiens] 70 1e-12
gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] 70 1e-12
gi|6912292 heterochromatin protein 1-alpha [Homo sapiens] 70 1e-12
gi|5803076 heterochromatin protein 1-beta [Homo sapiens] 65 4e-11
gi|187960037 heterochromatin protein 1-beta [Homo sapiens] 65 4e-11
gi|15082258 chromobox homolog 3 [Homo sapiens] 60 1e-09
gi|20544151 chromobox homolog 3 [Homo sapiens] 60 1e-09
gi|221307494 chromodomain protein, Y chromosome-like isoform a [... 51 6e-07
gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] 50 1e-06
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 47 1e-05
gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens] 46 3e-05
gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor... 46 3e-05
gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo... 46 3e-05
gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s... 46 3e-05
gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s... 46 3e-05
gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] 46 3e-05
gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] 46 3e-05
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 46 3e-05
gi|110611184 chromodomain helicase DNA binding protein 2 isoform... 46 3e-05
gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens] 45 4e-05
gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens] 45 6e-05
gi|169211171 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|154759251 keratin associated protein 10-9 [Homo sapiens] 39 0.002
gi|5803102 MORF-related gene 15 isoform 1 [Homo sapiens] 39 0.004
>gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]
Length = 211
Score = 449 bits (1155), Expect = e-127
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK 60
MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
Sbjct: 1 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK 60
Query: 61 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKVGGCAGYADPTSQHPLGVGGRQRE 120
KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKVGGCAGYADPTSQHPLGVGGRQRE
Sbjct: 61 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKVGGCAGYADPTSQHPLGVGGRQRE 120
Query: 121 GLGPSGRGWHFCQQSVPLLGKQEPPFFLSLSFCCQGPQPAESSSPPLPGASCFSLSCTPL 180
GLGPSGRGWHFCQQSVPLLGKQEPPFFLSLSFCCQGPQPAESSSPPLPGASCFSLSCTPL
Sbjct: 121 GLGPSGRGWHFCQQSVPLLGKQEPPFFLSLSFCCQGPQPAESSSPPLPGASCFSLSCTPL 180
Query: 181 CWVAGSNCCRQALFPPRGSLGDGKEQEACVQ 211
CWVAGSNCCRQALFPPRGSLGDGKEQEACVQ
Sbjct: 181 CWVAGSNCCRQALFPPRGSLGDGKEQEACVQ 211
>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
Length = 532
Score = 197 bits (502), Expect = 4e-51
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK 60
MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
Sbjct: 1 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK 60
Query: 61 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLK 96
KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLK
Sbjct: 61 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLK 96
>gi|55770830 chromobox homolog 4 [Homo sapiens]
Length = 560
Score = 111 bits (278), Expect = 4e-25
Identities = 57/116 (49%), Positives = 79/116 (68%), Gaps = 4/116 (3%)
Query: 3 ELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE 62
EL +VGE VFA E I KR+RKG++EYLVKWRGWS K+N+WEPEENILDPRLL+AFQ +E
Sbjct: 2 ELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRE 61
Query: 63 HEKEVQN-RKRGKRPRGRPRKLTAMSSCSRRSKLKVGGCAGYADPTSQHPLGVGGR 117
++++ RKRG +P+ + + + +RRS + G D ++ LG G+
Sbjct: 62 RQEQLMGYRKRGPKPK---PLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGK 114
>gi|10190682 chromobox homolog 8 [Homo sapiens]
Length = 389
Score = 108 bits (269), Expect = 4e-24
Identities = 59/128 (46%), Positives = 82/128 (64%), Gaps = 5/128 (3%)
Query: 3 ELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE 62
ELS+VGE+VFAAE +L +R+RKG++EYLVKW+GWS K+++WEPEENILD RLL AF+++E
Sbjct: 2 ELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERE 61
Query: 63 HEKEVQN-RKRGKRPRGRPRKLTAMSSCSRRSKLKVGGCAGYADP---TSQHPLGVGGRQ 118
E E+ +KRG +P+ K A + ++ + + G P S L R
Sbjct: 62 REMELYGPKKRGPKPKTFLLKAQAKAK-AKTYEFRSDSARGIRIPYPGRSPQDLASTSRA 120
Query: 119 REGLGPSG 126
REGL G
Sbjct: 121 REGLRNMG 128
>gi|46852392 chromobox homolog 6 [Homo sapiens]
Length = 412
Score = 106 bits (265), Expect = 1e-23
Identities = 50/92 (54%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Query: 3 ELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE 62
ELS+VGE+VFAAE I+ +R+RKG++EYLVKW+GW+ K+++WEPEENILD RL+ AF++KE
Sbjct: 2 ELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKE 61
Query: 63 HEKEVQN-RKRGKRPRGRPRKLTAMSSCSRRS 93
E+E+ +KRG +P+ K A + R S
Sbjct: 62 RERELYGPKKRGPKPKTFLLKARAQAEALRIS 93
>gi|28372505 chromobox homolog 7 [Homo sapiens]
Length = 251
Score = 102 bits (253), Expect = 3e-22
Identities = 45/76 (59%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 3 ELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE 62
ELS++GEQVFA E I KR+RKGK+EYLVKW+GW K+++WEPEE+ILDPRL++A+++KE
Sbjct: 2 ELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKE 61
Query: 63 HEKEVQN-RKRGKRPR 77
RKRG +P+
Sbjct: 62 ERDRASGYRKRGPKPK 77
>gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 70.5 bits (171), Expect = 1e-12
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 5 SSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK-EH 63
SS E+ + E +L +R+ KG++EYL+KW+G+S +HN+WEPE+N+ P L+ F KK +
Sbjct: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
Query: 64 EKEVQNRKRGKRPRGRPRK 82
KE +N K ++ RK
Sbjct: 73 MKEGENNKPREKSESNKRK 91
>gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 70.5 bits (171), Expect = 1e-12
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 5 SSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK-EH 63
SS E+ + E +L +R+ KG++EYL+KW+G+S +HN+WEPE+N+ P L+ F KK +
Sbjct: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
Query: 64 EKEVQNRKRGKRPRGRPRK 82
KE +N K ++ RK
Sbjct: 73 MKEGENNKPREKSESNKRK 91
>gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 70.5 bits (171), Expect = 1e-12
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 5 SSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK-EH 63
SS E+ + E +L +R+ KG++EYL+KW+G+S +HN+WEPE+N+ P L+ F KK +
Sbjct: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
Query: 64 EKEVQNRKRGKRPRGRPRK 82
KE +N K ++ RK
Sbjct: 73 MKEGENNKPREKSESNKRK 91
>gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 65.1 bits (157), Expect = 4e-11
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 1 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF-Q 59
+EE+ E+ + E +L +R+ KGK+EYL+KW+G+S + N+WEPEEN+ P L+ F Q
Sbjct: 10 VEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 69
Query: 60 KKEHEKEVQNRKRGKR 75
++ E + GKR
Sbjct: 70 SQKTAHETDKSEGGKR 85
>gi|187960037 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 65.1 bits (157), Expect = 4e-11
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 1 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF-Q 59
+EE+ E+ + E +L +R+ KGK+EYL+KW+G+S + N+WEPEEN+ P L+ F Q
Sbjct: 10 VEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 69
Query: 60 KKEHEKEVQNRKRGKR 75
++ E + GKR
Sbjct: 70 SQKTAHETDKSEGGKR 85
>gi|15082258 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 60.1 bits (144), Expect = 1e-09
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 12 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEHEKEVQNRK 71
F E +L +R+ GK+EY +KW+G++ N+WEPEEN+ P L+ AF + ++K
Sbjct: 30 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAF--------LNSQK 81
Query: 72 RGKRPRGRPRK-LTAMSSCSRRSKLK 96
GK G RK L+ S +SK K
Sbjct: 82 AGKEKDGTKRKSLSDSESDDSKSKKK 107
>gi|20544151 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 60.1 bits (144), Expect = 1e-09
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 12 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEHEKEVQNRK 71
F E +L +R+ GK+EY +KW+G++ N+WEPEEN+ P L+ AF + ++K
Sbjct: 30 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAF--------LNSQK 81
Query: 72 RGKRPRGRPRK-LTAMSSCSRRSKLK 96
GK G RK L+ S +SK K
Sbjct: 82 AGKEKDGTKRKSLSDSESDDSKSKKK 107
>gi|221307494 chromodomain protein, Y chromosome-like isoform a
[Homo sapiens]
Length = 544
Score = 51.2 bits (121), Expect = 6e-07
Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 9 EQVFAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQKKEHEKE 66
E+++ E I+ KR +KGK EYLV+W+G+ S+ ++WEPE+++++ + F ++ EK+
Sbjct: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63
Query: 67 VQN--RKRGKRPRGRPRKLTAMSSCSRRSK 94
++ + + RK + S+ S SK
Sbjct: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSK 93
>gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]
Length = 860
Score = 50.4 bits (119), Expect = 1e-06
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 8 GEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQKKEHEKE 66
GE VF E IL + GK+ Y V+W+G++S ++WEPE ++ D +LL F+KK E +
Sbjct: 55 GEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAENK 114
Query: 67 VQ 68
+
Sbjct: 115 AK 116
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 47.0 bits (110), Expect = 1e-05
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 20 KRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEHEKEVQNRKR 72
K G+++YL+KW+GWS HN+WE EE + + + ++K+ Q KR
Sbjct: 309 KNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKR 361
>gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens]
Length = 412
Score = 45.8 bits (107), Expect = 3e-05
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 20 KRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEHEKEVQNRKRGKRPR 77
K++R+ + YLVKWRG+ ++WEP +N+ R+L F K + ++ R K PR
Sbjct: 52 KKIREQEY-YLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDLERELLRRHHRSKTPR 108
>gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform
b [Homo sapiens]
Length = 554
Score = 45.8 bits (107), Expect = 3e-05
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 7 VGEQVFAAECILSKRLRK-GKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQKKEHE 64
+ Q F E I+ KR K G +YLV+W+G+ + ++WEPE+++++ + + F +++ E
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTE 60
Query: 65 KE 66
K+
Sbjct: 61 KQ 62
>gi|25453481 Y chromosome chromodomain protein 1, telomeric
isoform a [Homo sapiens]
Length = 540
Score = 45.8 bits (107), Expect = 3e-05
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 7 VGEQVFAAECILSKRLRK-GKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQKKEHE 64
+ Q F E I+ KR K G +YLV+W+G+ + ++WEPE+++++ + + F +++ E
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTE 60
Query: 65 KE 66
K+
Sbjct: 61 KQ 62
>gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo
sapiens]
Length = 554
Score = 45.8 bits (107), Expect = 3e-05
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 7 VGEQVFAAECILSKRLRK-GKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQKKEHE 64
+ Q F E I+ KR K G +YLV+W+G+ + ++WEPE+++++ + + F +++ E
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTE 60
Query: 65 KE 66
K+
Sbjct: 61 KQ 62
>gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo
sapiens]
Length = 540
Score = 45.8 bits (107), Expect = 3e-05
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 7 VGEQVFAAECILSKRLRK-GKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQKKEHE 64
+ Q F E I+ KR K G +YLV+W+G+ + ++WEPE+++++ + + F +++ E
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTE 60
Query: 65 KE 66
K+
Sbjct: 61 KQ 62
>gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]
Length = 541
Score = 45.8 bits (107), Expect = 3e-05
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 7 VGEQVFAAECILSKRLRK-GKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQKKEHE 64
+ Q F E I+ KR K G +YLV+W+G+ + ++WEPE+++++ + + F +++ E
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTE 60
Query: 65 KE 66
K+
Sbjct: 61 KQ 62
>gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]
Length = 541
Score = 45.8 bits (107), Expect = 3e-05
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 7 VGEQVFAAECILSKRLRK-GKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQKKEHE 64
+ Q F E I+ KR K G +YLV+W+G+ + ++WEPE+++++ + + F +++ E
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTE 60
Query: 65 KE 66
K+
Sbjct: 61 KQ 62
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 45.8 bits (107), Expect = 3e-05
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 5/46 (10%)
Query: 24 KGKLEYLVKWRGWSSKHNSWEPEENILDPRL-----LLAFQKKEHE 64
+G+++YL+KW+GWS H++WE EE++ ++ L F+KKE E
Sbjct: 302 EGEIQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDE 347
Score = 27.7 bits (60), Expect = 7.4
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 5 SSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPE-------ENILDPRLLLA 57
S++G+ F A K + EYL KW G SWE E +N +D +
Sbjct: 391 STLGQTDFPAHS--RKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKFQNCID-----S 443
Query: 58 FQKKEHEKEVQNRKRGKRPRGRPR 81
F + + K + R+ K + RPR
Sbjct: 444 FHSRNNSKTIPTRE-CKALKQRPR 466
>gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2
[Homo sapiens]
Length = 501
Score = 45.8 bits (107), Expect = 3e-05
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 5/46 (10%)
Query: 24 KGKLEYLVKWRGWSSKHNSWEPEENILDPRL-----LLAFQKKEHE 64
+G+++YL+KW+GWS H++WE EE++ ++ L F+KKE E
Sbjct: 302 EGEIQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDE 347
Score = 27.7 bits (60), Expect = 7.4
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 5 SSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPE-------ENILDPRLLLA 57
S++G+ F A K + EYL KW G SWE E +N +D +
Sbjct: 391 STLGQTDFPAHS--RKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKFQNCID-----S 443
Query: 58 FQKKEHEKEVQNRKRGKRPRGRPR 81
F + + K + R+ K + RPR
Sbjct: 444 FHSRNNSKTIPTRE-CKALKQRPR 466
>gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo
sapiens]
Length = 350
Score = 45.1 bits (105), Expect = 4e-05
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 29 YLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEHEKEVQNRK 71
YLVKW+GW N+WEP +N+ P LL F +H Q +K
Sbjct: 4 YLVKWKGWPDSTNTWEPLQNLKCPLLLQQFSNDKHNYLSQVKK 46
>gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]
Length = 506
Score = 44.7 bits (104), Expect = 6e-05
Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 11 VFAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEENIL 50
++ E I+ KR +KGK EYL++W+G+ S ++WEPE ++L
Sbjct: 6 LYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLL 46
>gi|169211171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 40.0 bits (92), Expect = 0.001
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 36 WSSKHNSWEPEENILDP-RLLLAFQKKEHEKEVQNRKRGKRPRGRPRK----LTAMSSCS 90
WS+ +SW+PE + P R + H +P+GR K +T +C+
Sbjct: 45 WSALCDSWQPEMFLSTPWRGQAGASEPRHPSTATEGSYFAKPQGRVSKTTVGITVTGACA 104
Query: 91 RRSKLKVGGCAGYADPTSQ--HPLGVGGRQREG 121
R ++++GG ++ P SQ PL G EG
Sbjct: 105 RALRMRIGGAESHSAPGSQAATPLNNSGYAEEG 137
>gi|154759251 keratin associated protein 10-9 [Homo sapiens]
Length = 292
Score = 39.3 bits (90), Expect = 0.002
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 153 CCQGP--QPAESSSPPLPGASCFSLSCTPLCWV----AGSNCCRQALFPPRGSLGDGKEQ 206
CCQ QPA +S P A C + C P+C V S+CC+Q+ + P +
Sbjct: 79 CCQQSSCQPAYCTSSPCQQACCVPVCCKPVCCVPVCCGASSCCQQSSYQPACCASSSCQP 138
Query: 207 EACV 210
CV
Sbjct: 139 ACCV 142
Score = 32.3 bits (72), Expect = 0.30
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 132 CQQS--VPLLGKQE--PPFFLSLSFCCQGP--QPAESSSPPLPGASCFSLSCTPLCWVA- 184
CQQ+ VP+ K P S CCQ QPA +S A C + C P+C
Sbjct: 95 CQQACCVPVCCKPVCCVPVCCGASSCCQQSSYQPACCASSSCQPACCVPVCCKPVCCAPT 154
Query: 185 ----GSNCCRQALFPPRGSLGDGKEQEACV 210
+CC+Q+ P +Q CV
Sbjct: 155 CSEDSYSCCQQSSCQPACCTSSPCQQSYCV 184
Score = 30.4 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 153 CCQGPQPAESSSPPLPGASCFSLSCTPLCWVAGSNCCRQALFP 195
CC+ P A S P P C +L CTP+ V+ S CC+ P
Sbjct: 26 CCEPPCCATSCCAPAP---CLTLVCTPVSRVS-SPCCQVTCEP 64
Score = 28.1 bits (61), Expect = 5.7
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 153 CCQGP--QPAESSSPPLPGASCFSLSCTPLCWV----------AGSNCCRQA 192
CCQ QPA +S P + C + C P+C A S CC+Q+
Sbjct: 162 CCQQSSCQPACCTSSPCQQSYCVPVCCKPVCCKPICCVPVCSGASSLCCQQS 213
Score = 28.1 bits (61), Expect = 5.7
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 151 SFCCQ--GPQPAESSSPPLPGASCFSLSCTPLC----WVAGSNCC 189
S CCQ G QPA ++ +S SL C P+C V S+CC
Sbjct: 207 SLCCQQSGCQPACCTTSCCRPSSSVSLLCRPVCRPACCVPVSSCC 251
>gi|5803102 MORF-related gene 15 isoform 1 [Homo sapiens]
Length = 323
Score = 38.5 bits (88), Expect = 0.004
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 8 GEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENIL---------DPRLLLAF 58
G ++ A+C+ ++ +++Y + + GW+ + W PE +L L A
Sbjct: 22 GPLLYEAKCV-KVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDTNLQKQRELQKAN 80
Query: 59 QKKEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKVGGCAGYADPTSQHP 111
Q++ E +++ GK+ G +K + + + K G G T Q P
Sbjct: 81 QEQYAEGKMRGAAPGKKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQPP 133
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,701,271
Number of Sequences: 37866
Number of extensions: 597069
Number of successful extensions: 2478
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 2314
Number of HSP's gapped (non-prelim): 216
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.