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Search of human proteins with 9994185
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9994185 RNA binding motif protein 7 [Homo sapiens]
(266 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9994185 RNA binding motif protein 7 [Homo sapiens] 550 e-157
gi|169234630 RNA binding motif protein 11 [Homo sapiens] 122 4e-28
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 76 3e-14
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 67 2e-11
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 62 5e-10
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 62 5e-10
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 61 9e-10
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe... 61 9e-10
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe... 61 9e-10
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 61 1e-09
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 60 2e-09
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 60 2e-09
gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 58 8e-09
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 58 1e-08
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 58 1e-08
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 58 1e-08
gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 57 2e-08
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 57 2e-08
gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... 56 3e-08
gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... 56 3e-08
gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a ... 56 4e-08
gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b... 56 4e-08
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 55 5e-08
gi|148612890 serine-arginine repressor protein [Homo sapiens] 55 6e-08
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 54 1e-07
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 54 1e-07
gi|33620747 myelin expression factor 2 [Homo sapiens] 54 2e-07
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 54 2e-07
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 54 2e-07
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 54 2e-07
>gi|9994185 RNA binding motif protein 7 [Homo sapiens]
Length = 266
Score = 550 bits (1418), Expect = e-157
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 60
MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE
Sbjct: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 60
Query: 61 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERT 120
VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERT
Sbjct: 61 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERT 120
Query: 121 MDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSHS 180
MDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSHS
Sbjct: 121 MDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSHS 180
Query: 181 FNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDDFFYEDR 240
FNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDDFFYEDR
Sbjct: 181 FNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDDFFYEDR 240
Query: 241 NHDDWSHDYDNRRDSSRDGKWRSSRH 266
NHDDWSHDYDNRRDSSRDGKWRSSRH
Sbjct: 241 NHDDWSHDYDNRRDSSRDGKWRSSRH 266
>gi|169234630 RNA binding motif protein 11 [Homo sapiens]
Length = 281
Score = 122 bits (305), Expect = 4e-28
Identities = 60/99 (60%), Positives = 75/99 (75%)
Query: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 60
M A EADRT+FVGNLE +V EE+L+ELF QAGP+ KV I KD++GKPK F FV FKH
Sbjct: 1 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP 60
Query: 61 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSY 99
SV YA+ LLNGI+LYGRPI +Q+R GSS + + + S+
Sbjct: 61 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSF 99
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 76.3 bits (186), Expect = 3e-14
Identities = 41/102 (40%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 9 DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAM 67
D T++VG L+ KV+E LL+ELF QAGPV+ +PKD+ G+ + + FV F E YA+
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 68 NLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSP 109
++N IKLYG+PI++ ++ + + DV + +GN P
Sbjct: 72 KIMNMIKLYGKPIRVN-KASAHNKNLDVGANI---FIGNLDP 109
Score = 49.7 bits (117), Expect = 3e-06
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKV-KIPKDKD-GKPKQFAFVNFKHEVSVPYAMNL 69
+F+GNL+ ++ E+LL++ F G +++ KI +D D G K +AF+NF + A+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 70 LNGIKLYGRPIKIQF 84
+NG L RPI + +
Sbjct: 162 MNGQYLCNRPITVSY 176
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 67.0 bits (162), Expect = 2e-11
Identities = 80/282 (28%), Positives = 111/282 (39%), Gaps = 42/282 (14%)
Query: 7 EADRT--LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSV 63
EADR LF+G L T+ E+ L +F + G +++V + KD++ K + FAFV F+
Sbjct: 3 EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 64 PYAMNLLNGIKLYGRPIKIQ------FRSGSSHAPQDVSLSYPQHHV----GNSSPTSTS 113
A +NG L G+ IK++ F SG P P + G S T
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGP 122
Query: 114 PSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPS 173
PSR MD+ S S P +R S G P +S S
Sbjct: 123 PSRGGH-MDDGGYSMNFNMSSSRGPLPVKRGPPPRS-----------GGPPPKRSAPSGP 170
Query: 174 VQSHSHSFNQSSSSQWRQ--GTPSSQRKVRMNSYPYLADRH--YSREQRYTDHGSDHHYR 229
V+S S ++ S+ R G P + + YL+ R YS + Y S Y
Sbjct: 171 VRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSY----SSRDYP 226
Query: 230 GKRD---------DFFYEDRNHDDWSHDYDNRRDSSRDGKWR 262
RD D+ Y D H DY +R S RDG R
Sbjct: 227 SSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR 268
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
[Homo sapiens]
Length = 496
Score = 62.0 bits (149), Expect = 5e-10
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 38/279 (13%)
Query: 7 EADRT--LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVP 64
EAD LF+G L + E++L +F + GP+ +V + KD+ K + FAF+ F++
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
Query: 65 YAMNLLNGIKLYGRPIKIQ------FRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYE 118
A +NG L+G+ IK++ F+SG P +S + SPS
Sbjct: 63 NAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPP-------------ASSRNRSPS--- 106
Query: 119 RTMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGG---KFGSSPLDQSGFSPSVQ 175
++ + S+ + S E L+ MSY P +SG P +
Sbjct: 107 GSLRSARGSSGGTRGWLPSHEGHLDDGGYTPDLK-MSYSRGLIPVKRGPSSRSGGPPPKK 165
Query: 176 SHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLA-------DRHYSREQRYTDHGSDHHY 228
S + +S+S QG P SQR+ P A DR +R Y + +H
Sbjct: 166 SAPSAVARSNSWMGSQG-PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPS 224
Query: 229 RGKRDDFFYEDRNHDDWSHDYDNRRDSSRDG--KWRSSR 265
+ D+ R + + + NR + S G RSSR
Sbjct: 225 CQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSR 263
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
[Homo sapiens]
Length = 496
Score = 62.0 bits (149), Expect = 5e-10
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 38/279 (13%)
Query: 7 EADRT--LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVP 64
EAD LF+G L + E++L +F + GP+ +V + KD+ K + FAF+ F++
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
Query: 65 YAMNLLNGIKLYGRPIKIQ------FRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYE 118
A +NG L+G+ IK++ F+SG P +S + SPS
Sbjct: 63 NAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPP-------------ASSRNRSPS--- 106
Query: 119 RTMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGG---KFGSSPLDQSGFSPSVQ 175
++ + S+ + S E L+ MSY P +SG P +
Sbjct: 107 GSLRSARGSSGGTRGWLPSHEGHLDDGGYTPDLK-MSYSRGLIPVKRGPSSRSGGPPPKK 165
Query: 176 SHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLA-------DRHYSREQRYTDHGSDHHY 228
S + +S+S QG P SQR+ P A DR +R Y + +H
Sbjct: 166 SAPSAVARSNSWMGSQG-PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPS 224
Query: 229 RGKRDDFFYEDRNHDDWSHDYDNRRDSSRDG--KWRSSR 265
+ D+ R + + + NR + S G RSSR
Sbjct: 225 CQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSR 263
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
[Homo sapiens]
Length = 496
Score = 61.2 bits (147), Expect = 9e-10
Identities = 68/273 (24%), Positives = 115/273 (42%), Gaps = 26/273 (9%)
Query: 7 EADRT--LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVP 64
EAD LF+G L + E++L +F + GP+ +V + KD+ K + FAF+ F++
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
Query: 65 YAMNLLNGIKLYGRPIKIQ------FRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYE 118
A +NG L+G+ IK++ F+SG P P S S +R
Sbjct: 63 NAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRP-------PASSRNRSPSGSLRSARGS 115
Query: 119 R--TMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYG--GKFGSSPLDQSGFSPSV 174
R T + S + +P+ + + L + G + G P +S S
Sbjct: 116 RGGTRGWLPSQEGHLDDGGYTPD---LKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVA 172
Query: 175 QSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDD 234
+S+S +Q SQ R+ R+ ++S + DR +R Y + +H + D
Sbjct: 173 RSNSWMGSQGPMSQRRENYGVPPRRATISS--WRNDRMSTRHDGYATNDGNHPSCQETRD 230
Query: 235 FFYEDRNHDDWSHDYDNRRDSSRDG--KWRSSR 265
+ R + + + NR + S G RSSR
Sbjct: 231 YAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSR 263
>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
[Homo sapiens]
Length = 496
Score = 61.2 bits (147), Expect = 9e-10
Identities = 68/273 (24%), Positives = 115/273 (42%), Gaps = 26/273 (9%)
Query: 7 EADRT--LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVP 64
EAD LF+G L + E++L +F + GP+ +V + KD+ K + FAF+ F++
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
Query: 65 YAMNLLNGIKLYGRPIKIQ------FRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYE 118
A +NG L+G+ IK++ F+SG P P S S +R
Sbjct: 63 NAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRP-------PASSRNRSPSGSLRSARGS 115
Query: 119 R--TMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYG--GKFGSSPLDQSGFSPSV 174
R T + S + +P+ + + L + G + G P +S S
Sbjct: 116 RGGTRGWLPSQEGHLDDGGYTPD---LKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVA 172
Query: 175 QSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDD 234
+S+S +Q SQ R+ R+ ++S + DR +R Y + +H + D
Sbjct: 173 RSNSWMGSQGPMSQRRENYGVPPRRATISS--WRNDRMSTRHDGYATNDGNHPSCQETRD 230
Query: 235 FFYEDRNHDDWSHDYDNRRDSSRDG--KWRSSR 265
+ R + + + NR + S G RSSR
Sbjct: 231 YAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSR 263
>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
[Homo sapiens]
Length = 496
Score = 61.2 bits (147), Expect = 9e-10
Identities = 68/273 (24%), Positives = 115/273 (42%), Gaps = 26/273 (9%)
Query: 7 EADRT--LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVP 64
EAD LF+G L + E++L +F + GP+ +V + KD+ K + FAF+ F++
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
Query: 65 YAMNLLNGIKLYGRPIKIQ------FRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYE 118
A +NG L+G+ IK++ F+SG P P S S +R
Sbjct: 63 NAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRP-------PASSRNRSPSGSLRSARGS 115
Query: 119 R--TMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYG--GKFGSSPLDQSGFSPSV 174
R T + S + +P+ + + L + G + G P +S S
Sbjct: 116 RGGTRGWLPSQEGHLDDGGYTPD---LKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVA 172
Query: 175 QSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDD 234
+S+S +Q SQ R+ R+ ++S + DR +R Y + +H + D
Sbjct: 173 RSNSWMGSQGPMSQRRENYGVPPRRATISS--WRNDRMSTRHDGYATNDGNHPSCQETRD 230
Query: 235 FFYEDRNHDDWSHDYDNRRDSSRDG--KWRSSR 265
+ R + + + NR + S G RSSR
Sbjct: 231 YAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSR 263
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
[Homo sapiens]
Length = 496
Score = 60.8 bits (146), Expect = 1e-09
Identities = 68/273 (24%), Positives = 115/273 (42%), Gaps = 26/273 (9%)
Query: 7 EADRT--LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVP 64
EAD LF+G L + E++L +F + GP+ +V + KD+ K + FAF+ F++
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
Query: 65 YAMNLLNGIKLYGRPIKIQ------FRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYE 118
A +NG L+G+ IK++ F+SG P P S S +R
Sbjct: 63 NAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRP-------PASSRNRSPSGSLRSARGS 115
Query: 119 R--TMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYG--GKFGSSPLDQSGFSPSV 174
R T + S + +P+ + + L + G + G P +S S
Sbjct: 116 RGGTRGWLPSHEGHLDDGGYTPD---LKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVA 172
Query: 175 QSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDD 234
+S+S +Q SQ R+ R+ ++S + DR +R Y + +H + D
Sbjct: 173 RSNSWMGSQGPMSQRRENYGVPPRRATISS--WRNDRMSTRHDGYATNDGNHPSCQETRD 230
Query: 235 FFYEDRNHDDWSHDYDNRRDSSRDG--KWRSSR 265
+ R + + + NR + S G RSSR
Sbjct: 231 YAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSR 263
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 60.5 bits (145), Expect = 2e-09
Identities = 79/282 (28%), Positives = 109/282 (38%), Gaps = 42/282 (14%)
Query: 7 EADRT--LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSV 63
EADR LF+G L T+ E+ L +F + G +++V + KD++ K + FAFV F+
Sbjct: 3 EADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADA 62
Query: 64 PYAMNLLNGIKLYGRPIKIQ------FRSGSSHAPQDVSLSYPQHHV----GNSSPTSTS 113
A +NG L G+ IK++ F G P P G S T
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGP 122
Query: 114 PSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPS 173
PSR MD+ S S P +R S G SP +S S
Sbjct: 123 PSRGGH-MDDGGYSMNFNMSSSRGPLPVKRGPPPRSG----------GPSP-KRSAPSGL 170
Query: 174 VQSHSHSFNQSSSSQWRQ--GTPSSQRKVRMNSYPYLADRH--YSREQRYTDHGSDHHYR 229
V+S S ++ S+ R G P + + YL+ R YS + Y S Y
Sbjct: 171 VRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSY----SSRDYP 226
Query: 230 GKRD---------DFFYEDRNHDDWSHDYDNRRDSSRDGKWR 262
RD D+ Y D H DY +R RDG R
Sbjct: 227 SSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR 268
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 60.5 bits (145), Expect = 2e-09
Identities = 79/282 (28%), Positives = 109/282 (38%), Gaps = 42/282 (14%)
Query: 7 EADRT--LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSV 63
EADR LF+G L T+ E+ L +F + G +++V + KD++ K + FAFV F+
Sbjct: 3 EADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADA 62
Query: 64 PYAMNLLNGIKLYGRPIKIQ------FRSGSSHAPQDVSLSYPQHHV----GNSSPTSTS 113
A +NG L G+ IK++ F G P P G S T
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGP 122
Query: 114 PSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPS 173
PSR MD+ S S P +R S G SP +S S
Sbjct: 123 PSRGGH-MDDGGYSMNFNMSSSRGPLPVKRGPPPRSG----------GPSP-KRSAPSGL 170
Query: 174 VQSHSHSFNQSSSSQWRQ--GTPSSQRKVRMNSYPYLADRH--YSREQRYTDHGSDHHYR 229
V+S S ++ S+ R G P + + YL+ R YS + Y S Y
Sbjct: 171 VRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSY----SSRDYP 226
Query: 230 GKRD---------DFFYEDRNHDDWSHDYDNRRDSSRDGKWR 262
RD D+ Y D H DY +R RDG R
Sbjct: 227 SSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR 268
>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
Length = 375
Score = 58.2 bits (139), Expect = 8e-09
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 7 EADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYA 66
E +TL+VGNL VTE L+ +LF Q GP K+ D G + FV F A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFHEHRHAAAA 62
Query: 67 MNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTS 113
+ +NG K+ G+ +K+ + + S +D S ++ VG+ SP T+
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTS-NHFHVFVGDLSPEITT 108
Score = 42.0 bits (97), Expect = 6e-04
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAMNLL 70
+FVG+L ++T E + F G + ++ KD GK K + FV+F ++ A+ +
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 71 NGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERTMDNMTS--SA 128
G L GR I+ + + AP+ S + + +SPS +TS +
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 216
Query: 129 QIIQRSFS 136
Q+++++FS
Sbjct: 217 QLMRQTFS 224
Score = 37.7 bits (86), Expect = 0.010
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLL 70
T++ G + + +TE+L+ + F G ++++++ DK ++FV F S +A+ +
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG-----YSFVRFNSHESAAHAIVSV 258
Query: 71 NGIKLYGRPIKIQFRSGS----SHAPQDVSLSYPQ 101
NG + G +K + + + Q + YPQ
Sbjct: 259 NGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQ 293
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 57.8 bits (138), Expect = 1e-08
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMN 68
R++FVGN+ + TEE L ++F + GPV+ ++ D++ GKPK + F ++ + + AM
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 69 LLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP 114
LNG + GR +++ + + + SL G +P SP
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSL-------GTGAPVIESP 114
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 57.8 bits (138), Expect = 1e-08
Identities = 68/232 (29%), Positives = 101/232 (43%), Gaps = 35/232 (15%)
Query: 7 EADRTLFVGNLETKVTE-ELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 65
E RT++VGNL ++ T + L E F Q G V V++ D+ +P +FAFV F + SVP
Sbjct: 179 EIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPR 237
Query: 66 AMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERTMDNMT 125
A+ NG+ RP+KI + + P +++ PQ + E M +
Sbjct: 238 AL-AFNGVMFGDRPLKINHSNNAIVKPPEMT---PQ----------AAAKELEEVMKRVR 283
Query: 126 SSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSHSFNQSS 185
+ I + PE S GG+ S +S S S SHS + S
Sbjct: 284 EAQSFISAAI-EPE---------SGKSNERKGGRSRSHTRSKSRSS----SKSHSRRKRS 329
Query: 186 SSQWRQGTPS---SQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDD 234
S+ R + + S++K R S R SRE+R + S H R KR D
Sbjct: 330 QSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKS--RSRSHSRDKRKD 379
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 57.8 bits (138), Expect = 1e-08
Identities = 68/232 (29%), Positives = 101/232 (43%), Gaps = 35/232 (15%)
Query: 7 EADRTLFVGNLETKVTE-ELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 65
E RT++VGNL ++ T + L E F Q G V V++ D+ +P +FAFV F + SVP
Sbjct: 63 EIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPR 121
Query: 66 AMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERTMDNMT 125
A+ NG+ RP+KI + + P +++ PQ + E M +
Sbjct: 122 AL-AFNGVMFGDRPLKINHSNNAIVKPPEMT---PQ----------AAAKELEEVMKRVR 167
Query: 126 SSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSHSFNQSS 185
+ I + PE S GG+ S +S S S SHS + S
Sbjct: 168 EAQSFISAAI-EPE---------SGKSNERKGGRSRSHTRSKSRSS----SKSHSRRKRS 213
Query: 186 SSQWRQGTPS---SQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDD 234
S+ R + + S++K R S R SRE+R + S H R KR D
Sbjct: 214 QSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKS--RSRSHSRDKRKD 263
>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
Length = 386
Score = 57.0 bits (136), Expect = 2e-08
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 7 EADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYA 66
E +TL+VGNL VTE L+ +LF Q GP K+ D G + FV F A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFHEHRHAAAA 62
Query: 67 MNLLNGIKLYGRPIKIQFRSGSSHAPQD------VSLSYPQHH----VGNSSPTSTS 113
+ +NG K+ G+ +K+ + + S +D VS Q H VG+ SP T+
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Score = 42.0 bits (97), Expect = 6e-04
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAMNLL 70
+FVG+L ++T E + F G + ++ KD GK K + FV+F ++ A+ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 71 NGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERTMDNMTS--SA 128
G L GR I+ + + AP+ S + + +SPS +TS +
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 129 QIIQRSFS 136
Q+++++FS
Sbjct: 228 QLMRQTFS 235
Score = 37.7 bits (86), Expect = 0.010
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLL 70
T++ G + + +TE+L+ + F G ++++++ DK ++FV F S +A+ +
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG-----YSFVRFNSHESAAHAIVSV 269
Query: 71 NGIKLYGRPIKIQFRSGS----SHAPQDVSLSYPQ 101
NG + G +K + + + Q + YPQ
Sbjct: 270 NGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQ 304
>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
Length = 322
Score = 56.6 bits (135), Expect = 2e-08
Identities = 59/264 (22%), Positives = 109/264 (41%), Gaps = 20/264 (7%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70
+F+G L ++TE + +F Q G ++ + + +DK GK K F F+ ++ + S A++
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 71 NGIKLYGRPIKIQFRSG-----SSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERTMDNMT 125
NGIK+ GR I++ S S DV+ + G +P SPS E + D
Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTP---SPSLSESSEDEKP 154
Query: 126 SSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSP-----LDQSGFSPSVQSHSHS 180
+ + E +++ A R++ SSP ++ P S +S
Sbjct: 155 TK----KHKKDKKEKKKKKKEKEKADREVQAEQPSSSSPRRKTVKEKDDTGPKKHSSKNS 210
Query: 181 FNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDDFFYEDR 240
++ S+ R+G + + + +R +E+ +H S + + DR
Sbjct: 211 -ERAQKSEPREGQKLPKSRTAYSGGAEDLERELKKEKPKHEHKSSSRREAREEKTRIRDR 269
Query: 241 NHDDWSH-DYDNRRDSSRDGKWRS 263
+H + N R R + RS
Sbjct: 270 GRSSDAHSSWYNGRSEGRSYRSRS 293
>gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Homo
sapiens]
Length = 200
Score = 56.2 bits (134), Expect = 3e-08
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAMNL 69
+L+VG+L +VTE +L+E F AGP++ ++I +DK + +A+VN++ V A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 70 LNGIKLYGRPIKIQF 84
LN + GRP++I +
Sbjct: 63 LNFDVIKGRPVRIMW 77
Score = 42.0 bits (97), Expect = 6e-04
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
+F+ NL + + L+ +F G ++ K+ D+ G PK + FV+F+ + S A++++N
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMN 150
Query: 72 GIKLYGRPIKI-QFRS 86
G+ L R I + +F+S
Sbjct: 151 GMFLNYRKIFVGRFKS 166
>gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo
sapiens]
Length = 200
Score = 56.2 bits (134), Expect = 3e-08
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAMNL 69
+L+VG+L +VTE +L+E F AGP++ ++I +DK + +A+VN++ V A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 70 LNGIKLYGRPIKIQF 84
LN + GRP++I +
Sbjct: 63 LNFDVIKGRPVRIMW 77
Score = 42.0 bits (97), Expect = 6e-04
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
+F+ NL + + L+ +F G ++ K+ D+ G PK + FV+F+ + S A++++N
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMN 150
Query: 72 GIKLYGRPIKI-QFRS 86
G+ L R I + +F+S
Sbjct: 151 GMFLNYRKIFVGRFKS 166
>gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a
[Homo sapiens]
Length = 730
Score = 55.8 bits (133), Expect = 4e-08
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 5 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVP 64
A T+FV NL+ KV + L E+F AG V++ I +DKDGK + V F+ +
Sbjct: 199 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAV 258
Query: 65 YAMNLLNGIKLYGRPIKIQ 83
A+++ NG L+ RP+ ++
Sbjct: 259 QAISMFNGQLLFDRPMHVK 277
Score = 41.6 bits (96), Expect = 7e-04
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 13 FVGNLETKVTEELLFELFHQ-AGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
F+ N+ V + L +L + G V V++ D +GK + A V FK E S+ A +LN
Sbjct: 74 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 133
Query: 72 GIKLYGRPIKIQFRSGSSHA 91
L GRP+K++ HA
Sbjct: 134 KHSLSGRPLKVKEDPDGEHA 153
Score = 38.9 bits (89), Expect = 0.005
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
+FV NL T ++L + F++ G V+ I K ++GK K V F+ A ++N
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMN 713
Query: 72 GIKLYGRPIKIQ 83
G+KL GR I ++
Sbjct: 714 GMKLSGREIDVR 725
>gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b
[Homo sapiens]
Length = 691
Score = 55.8 bits (133), Expect = 4e-08
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 5 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVP 64
A T+FV NL+ KV + L E+F AG V++ I +DKDGK + V F+ +
Sbjct: 160 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAV 219
Query: 65 YAMNLLNGIKLYGRPIKIQ 83
A+++ NG L+ RP+ ++
Sbjct: 220 QAISMFNGQLLFDRPMHVK 238
Score = 41.6 bits (96), Expect = 7e-04
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 13 FVGNLETKVTEELLFELFHQ-AGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
F+ N+ V + L +L + G V V++ D +GK + A V FK E S+ A +LN
Sbjct: 74 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 133
Query: 72 GIKLYGRPIKIQFRSGSSHA 91
L GRP+K++ HA
Sbjct: 134 KHSLSGRPLKVKEDPDGEHA 153
Score = 38.9 bits (89), Expect = 0.005
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
+FV NL T ++L + F++ G V+ I K ++GK K V F+ A ++N
Sbjct: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMN 674
Query: 72 GIKLYGRPIKIQ 83
G+KL GR I ++
Sbjct: 675 GMKLSGREIDVR 686
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 55.5 bits (132), Expect = 5e-08
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAMNL 69
+L+VG+L VTE +L+E F AGP++ ++I +D +A+VNF+H +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 70 LNGIKLYGRPIKIQF 84
+N + G+P++I +
Sbjct: 72 MNFDVIKGKPVRIMW 86
Score = 50.1 bits (118), Expect = 2e-06
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 60
+GA A E +++ N + +E L +LF + GP + VK+ D+ GK K F FV+F+
Sbjct: 183 LGARAKEFPN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 61 VSVPYAMNLLNGIKLYGRPIKI 82
A++ +NG +L G+ I +
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYV 263
Score = 38.9 bits (89), Expect = 0.005
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
+FV NL+ + + L++ G ++ + D++G K + FV+F+ + A+ +N
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKMN 159
Query: 72 GIKLYGRPIKI-QFRS 86
G+ L GR + + QF+S
Sbjct: 160 GMLLNGRKVFVGQFKS 175
Score = 31.6 bits (70), Expect = 0.75
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
L+V NL+ + +E L + F G + K+ + G+ K F FV F A+ +N
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 72 GIKLYGRPIKI 82
G + +P+ +
Sbjct: 355 GRIVATKPLYV 365
>gi|148612890 serine-arginine repressor protein [Homo sapiens]
Length = 261
Score = 55.1 bits (131), Expect = 6e-08
Identities = 66/255 (25%), Positives = 100/255 (39%), Gaps = 30/255 (11%)
Query: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKD-KDGKPKQFAFVNFKHEVSVPYAMNL 69
+LF+ N+ E L F + GP++ V IP D +P+ FA+V F+ A+
Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70
Query: 70 LNGIKLYGRPIKIQFRSGSSHAPQDVSLS-----YPQHHVGNSSPT-------STSPSRY 117
LN + GR I+IQF G P + P H + SP+ S+S R
Sbjct: 71 LNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRN 130
Query: 118 ERTMDNMTSSAQIIQRSFSSPENFQRQAVM----NSALRQMSYGGKFGSSPLDQSGFSPS 173
R D++ S R FS ++ R + SA + + FGS + S S
Sbjct: 131 RRRSDSLKESR---HRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSR---SKS 184
Query: 174 VQSHSHSFNQSSSS----QWRQGTPSSQRKVRMNSY---PYLADRHYSREQRYTDHGSDH 226
+Q S S +S SS Q GT S +S P + + Y+ +
Sbjct: 185 LQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKVQTAKHS 244
Query: 227 HYRGKRDDFFYEDRN 241
H+R Y +N
Sbjct: 245 HFRSHSRSRSYRHKN 259
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 54.3 bits (129), Expect = 1e-07
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69
RTL+VGNL VTE L+ +LF Q GP K+ + + FV F A+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN-DPYCFVEFYEHRDAAAALAA 67
Query: 70 LNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTS 113
+NG K+ G+ +K+ + + S +D S ++ VG+ SP T+
Sbjct: 68 MNGRKILGKEVKVNWATTPSSQKKDTS-NHFHVFVGDLSPEITT 110
Score = 39.3 bits (90), Expect = 0.004
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAMNLL 70
+FVG+L ++T E + F G + ++ KD GK K + FV+F +++ A+ +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 71 NGIKLYGRPIKIQFRSGSSHAPQ 93
G L GR I+ + + AP+
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPK 181
Score = 36.2 bits (82), Expect = 0.031
Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLL 70
T++ G + + +T++L+ + F G ++++++ +K ++FV F S +A+ +
Sbjct: 206 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG-----YSFVRFSTHESAAHAIVSV 260
Query: 71 NGIKLYGRPIKIQFRSGSSHAPQDV-SLSYPQHHVGNSSPTSTSPSRYERTMDN 123
NG + G +K + S ++ + Y Q G S +P +Y + M N
Sbjct: 261 NGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW--GQWSQVYGNPQQYGQYMAN 312
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 53.9 bits (128), Expect = 1e-07
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMN 68
R++FVGN+ + TEE L ++F + G V+ ++ D++ GKPK + F ++ + + AM
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 69 LLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSP 114
LNG + GR +++ + + + SL G ++P SP
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSL-------GPAAPIIDSP 114
>gi|33620747 myelin expression factor 2 [Homo sapiens]
Length = 600
Score = 53.5 bits (127), Expect = 2e-07
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 5 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVP 64
A T+FV NL+ KV + L E+F AG V + I +DKDGK + V F+ +
Sbjct: 228 AGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAV 287
Query: 65 YAMNLLNGIKLYGRPIKI----------QFRSGSSHAPQ 93
A+++ NG L+ RP+ + ++RS PQ
Sbjct: 288 QAISMFNGQFLFDRPMHVKMDDKSVPHEEYRSHDGKTPQ 326
Score = 41.6 bits (96), Expect = 7e-04
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
+FV NL +T + L E F Q G V+ +I K ++GK K V F S A ++N
Sbjct: 525 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKACRIMN 583
Query: 72 GIKLYGRPIKIQ 83
GIK+ GR I ++
Sbjct: 584 GIKISGREIDVR 595
Score = 39.3 bits (90), Expect = 0.004
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 12 LFVGNLETKVTEELLFELFHQ-AGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLL 70
+F+ N+ + + + +L + G V V++ KD +GK + V FK E V A+ +
Sbjct: 102 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 161
Query: 71 NGIKLYGRPIKIQ---FRSGSSHAPQDVSLSYPQHHV 104
N L GRP+ I+ + A Q S+P HV
Sbjct: 162 NKYDLSGRPLNIKEDPDGENARRALQRTGGSFPGGHV 198
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 53.5 bits (127), Expect = 2e-07
Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 9/256 (3%)
Query: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKD-KDGKPKQFAFVNFKHEVSVPYAMNL 69
+LFV N+ E L F + GP++ V +P D +P+ FA+V F+ A++
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 70 LNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERTMDNMTSSAQ 129
L+ + GR I+IQF G P + ++ SS RY R+ +
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVY--SSSRYDDYDRYRRSRSRSYERRR 128
Query: 130 IIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSHSFNQSSSSQW 189
RSF N++R ++ + + + S D F +S S S + S S
Sbjct: 129 SRSRSFD--YNYRRSYSPRNS--RPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSK 184
Query: 190 RQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDDFFYEDRNHDDWSHDY 249
Q + K R S + R S+ T + S Y +++ E S
Sbjct: 185 SQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRY--EKESRKKEPPRSKSQSRSQ 242
Query: 250 DNRRDSSRDGKWRSSR 265
R SR W S +
Sbjct: 243 SRSRSKSRSRSWTSPK 258
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3
[Homo sapiens]
Length = 631
Score = 53.5 bits (127), Expect = 2e-07
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEV 61
AA++ +L+VG+L + VTE +L+E F AGPV+ +++ +D + +A+VNF+
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 62 SVPYAMNLLNGIKLYGRPIKIQF 84
A++ +N + G+PI+I +
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMW 86
Score = 48.5 bits (114), Expect = 6e-06
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 60
+GA A E +++ N +V +E L ELF Q G + VK+ +D +GK K F FV+++
Sbjct: 183 LGAKAKEFTN-VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 61 VSVPYAMNLLNGIKLYGRPI 80
A+ +NG ++ G+ I
Sbjct: 242 EDANKAVEEMNGKEISGKII 261
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
+F+ NL+ + + L++ F G ++ K+ D++G K +AFV+F+ + + A+ +N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMN 159
Query: 72 GIKLYGRPIKI-QFRS 86
G+ L R + + +F+S
Sbjct: 160 GMLLNDRKVFVGRFKS 175
Score = 35.0 bits (79), Expect = 0.068
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
L++ NL+ + +E L + F G + K+ + DG+ K F FV F A+ +N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 72 GIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVG 105
G + +P+ + ++ Y Q G
Sbjct: 355 GRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAG 388
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 53.5 bits (127), Expect = 2e-07
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEV 61
AA++ +L+VG+L + VTE +L+E F AGPV+ +++ +D + +A+VNF+
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 62 SVPYAMNLLNGIKLYGRPIKIQF 84
A++ +N + G+PI+I +
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMW 86
Score = 48.5 bits (114), Expect = 6e-06
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 60
+GA A E +++ N +V +E L ELF Q G + VK+ +D +GK K F FV+++
Sbjct: 183 LGAKAKEFTN-VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 61 VSVPYAMNLLNGIKLYGRPI 80
A+ +NG ++ G+ I
Sbjct: 242 EDANKAVEEMNGKEISGKII 261
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
+F+ NL+ + + L++ F G ++ K+ D++G K +AFV+F+ + + A+ +N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMN 159
Query: 72 GIKLYGRPIKI-QFRS 86
G+ L R + + +F+S
Sbjct: 160 GMLLNDRKVFVGRFKS 175
Score = 35.0 bits (79), Expect = 0.068
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
L++ NL+ + +E L + F G + K+ + DG+ K F FV F A+ +N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 72 GIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVG 105
G + +P+ + ++ Y Q G
Sbjct: 355 GRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAG 388
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.128 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,399,851
Number of Sequences: 37866
Number of extensions: 479256
Number of successful extensions: 2252
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 1703
Number of HSP's gapped (non-prelim): 606
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.