Guide to the Human Genome
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Name: SLCO1B3 Sequence: fasta or formatted (702aa) NCBI GI: 9790233
Description:

solute carrier organic anion transporter family, member 1B3

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         38           3
 C cysteine            2.7         19           1
 D aspartate           3.1         22           2
 E glutamate           3.4         24           1
 F phenylalanine       7.0         49           3
 G glycine             8.3         58           2
 H histidine           1.9         13           1
 I isoleucine          8.1         57           2
 K lysine              6.3         44           3
 L leucine            10.5         74           3
 M methionine          2.7         19           1
 N asparagine          5.6         39           2
 P proline             3.3         23           1
 Q glutamine           3.0         21           2
 R arginine            2.7         19           2
 S serine             10.1         71           3
 T threonine           6.0         42           2
 V valine              5.6         39           1
 W tryptophan          0.9          6           2
 Y tyrosine            3.6         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier organic anion transporter family, memb... 
SLCO1B1               0.796   solute carrier organic anion transporter family, me...
LST-3TM12             0.726   liver-specific organic anion transporter 3TM12 [Hom...
SLCO1C1               0.437   solute carrier organic anion transporter family, memb...
SLCO1C1               0.421   solute carrier organic anion transporter family, me...
SLCO1C1               0.376   solute carrier organic anion transporter family, me...
SLCO1A2               0.358   organic anion transporting polypeptide A 
SLCO1A2               0.358   organic anion transporting polypeptide A 
SLCO1C1               0.339   solute carrier organic anion transporter family, me...
SLCO3A1               0.267   solute carrier organic anion transporter family, me...
SLCO3A1               0.267   solute carrier organic anion transporter family, me...
SLCO2A1               0.241   solute carrier organic anion transporter family, me...
SLCO2B1               0.227   solute carrier organic anion transporter family, me...
SLCO2B1               0.227   solute carrier organic anion transporter family, memb...
SLCO5A1               0.226   solute carrier organic anion transporter family, me...
SLCO4C1               0.225   solute carrier organic anion transporter family, mem...
SLCO4A1               0.207   solute carrier organic anion transporter family memb...
SLCO5A1               0.199   solute carrier organic anion transporter family, me...
SLCO5A1               0.176   solute carrier organic anion transporter family, me...
SLCO2B1               0.173   solute carrier organic anion transporter family, me...
SLCO6A1               0.136   solute carrier organic anion transporter family, mem...
SLC2A2                0.010   solute carrier family 2 (facilitated glucose transpor...
RECK                  0.009   RECK protein precursor 
SPINK5L2              0.007   Kazal type serine protease inhibitor 5-like 2 
AGRN                  0.006   agrin 
TMEFF2                0.006   transmembrane protein with EGF-like and two follista...
CLEC17A               0.006   C-type lectin domain family 17, member A 
CPAMD8                0.005   C3 and PZP-like, alpha-2-macroglobulin domain conta...
SLC1A3                0.005   solute carrier family 1 (glial high affinity glutam...
SLC37A2               0.005   solute carrier family 37 (glycerol-3-phosphate tran...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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