Guide to the Human Genome
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Name: SLCO1A2 Sequence: fasta or formatted (670aa) NCBI GI: 10835099
Description:

organic anion transporting polypeptide A

Referenced in:

Solute Carrier Families

Other entries for this name:
alt mRNA [670aa] organic anion transporting polypeptide A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         29           2
 C cysteine            4.3         29           1
 D aspartate           3.3         22           2
 E glutamate           5.4         36           2
 F phenylalanine       5.7         38           3
 G glycine             8.2         55           2
 H histidine           1.0          7           1
 I isoleucine          9.1         61           2
 K lysine              5.5         37           2
 L leucine            11.8         79           3
 M methionine          3.4         23           1
 N asparagine          4.9         33           2
 P proline             4.2         28           2
 Q glutamine           2.2         15           2
 R arginine            2.1         14           1
 S serine              8.2         55           3
 T threonine           5.7         38           2
 V valine              5.5         37           2
 W tryptophan          1.0          7           2
 Y tyrosine            4.0         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   organic anion transporting polypeptide A 
SLCO1A2               1.000   organic anion transporting polypeptide A 
SLCO1C1               0.441   solute carrier organic anion transporter family, memb...
SLCO1C1               0.432   solute carrier organic anion transporter family, me...
SLCO1B1               0.387   solute carrier organic anion transporter family, me...
SLCO1C1               0.385   solute carrier organic anion transporter family, me...
SLCO1B3               0.371   solute carrier organic anion transporter family, memb...
SLCO1C1               0.356   solute carrier organic anion transporter family, me...
LST-3TM12             0.341   liver-specific organic anion transporter 3TM12 [Hom...
SLCO3A1               0.274   solute carrier organic anion transporter family, me...
SLCO3A1               0.274   solute carrier organic anion transporter family, me...
SLCO2A1               0.257   solute carrier organic anion transporter family, me...
SLCO5A1               0.224   solute carrier organic anion transporter family, me...
SLCO2B1               0.224   solute carrier organic anion transporter family, me...
SLCO2B1               0.224   solute carrier organic anion transporter family, memb...
SLCO4C1               0.200   solute carrier organic anion transporter family, mem...
SLCO5A1               0.193   solute carrier organic anion transporter family, me...
SLCO4A1               0.191   solute carrier organic anion transporter family memb...
SLCO5A1               0.175   solute carrier organic anion transporter family, me...
SLCO2B1               0.171   solute carrier organic anion transporter family, me...
SLCO6A1               0.124   solute carrier organic anion transporter family, mem...
RECK                  0.009   RECK protein precursor 
FST                   0.006   follistatin isoform FST317 precursor 
FST                   0.006   follistatin isoform FST344 precursor 
AGRN                  0.005   agrin 
SPINK1                0.005   serine protease inhibitor, Kazal type 1 precursor [H...
TMEFF2                0.005   transmembrane protein with EGF-like and two follista...
OR2J3                 0.005   olfactory receptor, family 2, subfamily J, member 3...
FSTL3                 0.005   follistatin-like 3 glycoprotein precursor 
TAAR2                 0.004   trace amine associated receptor 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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