Guide to the Human Genome
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Name: SLCO6A1 Sequence: fasta or formatted (719aa) NCBI GI: 93277099
Description:

solute carrier organic anion transporter family, member 6A1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         46           2
 C cysteine            4.9         35           2
 D aspartate           3.6         26           2
 E glutamate           4.5         32           2
 F phenylalanine       6.0         43           2
 G glycine             7.9         57           2
 H histidine           0.7          5           1
 I isoleucine          9.0         65           2
 K lysine              7.4         53           3
 L leucine            10.3         74           2
 M methionine          1.8         13           1
 N asparagine          3.6         26           2
 P proline             4.2         30           1
 Q glutamine           2.4         17           1
 R arginine            3.9         28           2
 S serine              7.5         54           3
 T threonine           5.4         39           2
 V valine              6.4         46           2
 W tryptophan          1.1          8           2
 Y tyrosine            3.1         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier organic anion transporter family, mem... 
SLCO4C1               0.349   solute carrier organic anion transporter family, mem...
SLCO4A1               0.231   solute carrier organic anion transporter family memb...
SLCO5A1               0.168   solute carrier organic anion transporter family, me...
SLCO1B1               0.143   solute carrier organic anion transporter family, me...
SLCO3A1               0.142   solute carrier organic anion transporter family, me...
SLCO3A1               0.142   solute carrier organic anion transporter family, me...
SLCO5A1               0.140   solute carrier organic anion transporter family, me...
SLCO1C1               0.139   solute carrier organic anion transporter family, memb...
SLCO1C1               0.133   solute carrier organic anion transporter family, me...
SLCO5A1               0.133   solute carrier organic anion transporter family, me...
SLCO2A1               0.132   solute carrier organic anion transporter family, me...
SLCO1B3               0.131   solute carrier organic anion transporter family, memb...
SLCO2B1               0.123   solute carrier organic anion transporter family, me...
SLCO2B1               0.123   solute carrier organic anion transporter family, memb...
SLCO1C1               0.121   solute carrier organic anion transporter family, me...
SLCO1C1               0.118   solute carrier organic anion transporter family, me...
SLCO1A2               0.116   organic anion transporting polypeptide A 
SLCO1A2               0.116   organic anion transporting polypeptide A 
LST-3TM12             0.113   liver-specific organic anion transporter 3TM12 [Hom...
SLCO2B1               0.106   solute carrier organic anion transporter family, me...
CCKBR                 0.006   cholecystokinin B receptor 
MEGF9                 0.005   multiple EGF-like-domains 9 
SLC10A1               0.003   solute carrier family 10, member 1 
STEAP2                0.003   six transmembrane epithelial antigen of the prostat...
STEAP2                0.003   six transmembrane epithelial antigen of the prostat...
STEAP2                0.003   six transmembrane epithelial antigen of the prostat...
SLC18A1               0.003   solute carrier family 18 (vesicular monoamine), mem...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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