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Search of human proteins with 9506663
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9506663 ring finger protein 186 [Homo sapiens]
(227 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9506663 ring finger protein 186 [Homo sapiens] 470 e-133
gi|27734873 ring finger protein 152 [Homo sapiens] 57 1e-08
gi|32454739 tripartite motif-containing 3 [Homo sapiens] 50 2e-06
gi|32454737 tripartite motif-containing 3 [Homo sapiens] 50 2e-06
gi|153252110 ring finger protein 183 [Homo sapiens] 48 6e-06
gi|22749455 ring finger protein 182 [Homo sapiens] 48 6e-06
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 47 2e-05
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 47 2e-05
gi|239752655 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|239747208 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|239740999 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 45 4e-05
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 43 3e-04
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 43 3e-04
gi|153791360 ret finger protein-like 4B [Homo sapiens] 42 3e-04
gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens] 42 4e-04
gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens] 42 4e-04
gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens] 42 4e-04
gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens] 42 4e-04
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 42 6e-04
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 42 6e-04
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 42 6e-04
gi|30520320 ring finger protein 166 [Homo sapiens] 42 6e-04
gi|119220603 ring finger protein 208 [Homo sapiens] 41 7e-04
gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens] 40 0.002
gi|27436877 tripartite motif-containing 59 [Homo sapiens] 40 0.002
gi|33859668 Rabring 7 [Homo sapiens] 40 0.002
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 40 0.002
gi|30794216 tripartite motif-containing 56 [Homo sapiens] 40 0.002
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens] 40 0.002
>gi|9506663 ring finger protein 186 [Homo sapiens]
Length = 227
Score = 470 bits (1209), Expect = e-133
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MACTKTLQQSQPISAGATTTTTAVAPAGGHSGSTECDLECLVCREPYSCPRLPKLLACQH 60
MACTKTLQQSQPISAGATTTTTAVAPAGGHSGSTECDLECLVCREPYSCPRLPKLLACQH
Sbjct: 1 MACTKTLQQSQPISAGATTTTTAVAPAGGHSGSTECDLECLVCREPYSCPRLPKLLACQH 60
Query: 61 AFCAICLKLLLCVQDNTWSITCPLCRKVTAVPGGLICSLRDHEAVVGQLAQPCTEVSLCP 120
AFCAICLKLLLCVQDNTWSITCPLCRKVTAVPGGLICSLRDHEAVVGQLAQPCTEVSLCP
Sbjct: 61 AFCAICLKLLLCVQDNTWSITCPLCRKVTAVPGGLICSLRDHEAVVGQLAQPCTEVSLCP 120
Query: 121 QGLVDPADLAAGHPSLVGEDGQDEVSANHVAARRLAAHLLLLALLIILIGPFIYPGVLRW 180
QGLVDPADLAAGHPSLVGEDGQDEVSANHVAARRLAAHLLLLALLIILIGPFIYPGVLRW
Sbjct: 121 QGLVDPADLAAGHPSLVGEDGQDEVSANHVAARRLAAHLLLLALLIILIGPFIYPGVLRW 180
Query: 181 VLTFIIALALLMSTLFCCLPSTRGSCWPSSRTLFCREQKHSHISSIA 227
VLTFIIALALLMSTLFCCLPSTRGSCWPSSRTLFCREQKHSHISSIA
Sbjct: 181 VLTFIIALALLMSTLFCCLPSTRGSCWPSSRTLFCREQKHSHISSIA 227
>gi|27734873 ring finger protein 152 [Homo sapiens]
Length = 203
Score = 57.0 bits (136), Expect = 1e-08
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 38 LECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAVPGGL-I 96
LEC +C YS R PKLL C+H C++CL+ + Q + + CP CR VT +P G +
Sbjct: 10 LECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKD---VRCPWCRGVTKLPPGFSV 66
Query: 97 CSLRDHEAVVGQLAQPCT 114
L D V+ +A P T
Sbjct: 67 SQLPDDPEVLAVIAIPHT 84
>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 50.1 bits (118), Expect = 2e-06
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 38 LECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAVPGGLIC 97
L C +C + Y CP K+L C H FC CL+ + Q T ++CP+CR+ + +P +
Sbjct: 20 LVCSICLDRYQCP---KVLPCLHTFCERCLQNYIPAQSLT--LSCPVCRQTSILPEQGVS 74
Query: 98 SLRDHEAVVGQLAQPCTEVSLCPQGLVDPAD-----LAAGHP 134
+L+++ + + + P G DP D + AG P
Sbjct: 75 ALQNNFFISSLM----EAMQQAPDGAHDPEDPHPLSVVAGRP 112
>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 50.1 bits (118), Expect = 2e-06
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 38 LECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAVPGGLIC 97
L C +C + Y CP K+L C H FC CL+ + Q T ++CP+CR+ + +P +
Sbjct: 20 LVCSICLDRYQCP---KVLPCLHTFCERCLQNYIPAQSLT--LSCPVCRQTSILPEQGVS 74
Query: 98 SLRDHEAVVGQLAQPCTEVSLCPQGLVDPAD-----LAAGHP 134
+L+++ + + + P G DP D + AG P
Sbjct: 75 ALQNNFFISSLM----EAMQQAPDGAHDPEDPHPLSVVAGRP 112
>gi|153252110 ring finger protein 183 [Homo sapiens]
Length = 192
Score = 48.1 bits (113), Expect = 6e-06
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 35 ECDLECLVCREPYSCP-RLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAVPG 93
E + EC VC P++ PK+L C H+FC CL L V + CPLCR+ T +
Sbjct: 8 ELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLAS 67
Query: 94 G 94
G
Sbjct: 68 G 68
>gi|22749455 ring finger protein 182 [Homo sapiens]
Length = 247
Score = 48.1 bits (113), Expect = 6e-06
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 37 DLECLVCREPYSCP-RLPKLLACQHAFCAICLKLLLCVQDNTWS-ITCPLCRKVTAVPGG 94
+LEC +C Y+ R PK+L C H CA CL ++ D+ I CP CR T +P
Sbjct: 17 ELECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPFCRFETCLPDD 76
Query: 95 LICSLRDHEAVVGQL 109
+ SL D ++ L
Sbjct: 77 EVSSLPDDNNILVNL 91
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 46.6 bits (109), Expect = 2e-05
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 38 LECLVCREPYSCPRL-PKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAV 91
LEC +C E ++ +L PKLL C H C CL+ LL N + CP C K+T +
Sbjct: 18 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN--GVRCPFCSKITRI 70
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 46.6 bits (109), Expect = 2e-05
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 38 LECLVCREPYSCPRL-PKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAV 91
LEC +C E ++ +L PKLL C H C CL+ LL N + CP C K+T +
Sbjct: 18 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN--GVRCPFCSKITRI 70
>gi|239752655 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 46.2 bits (108), Expect = 2e-05
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 12 PISAGATTTTTAVAPAGGHSGSTECDLECLVCREPY-SCPRLPKLLACQHAFCAICLKLL 70
P SAG+ + P S LEC +C Y + + PK L+C H FC CL L
Sbjct: 28 PSSAGSPRS-----PGTPGSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARL 82
Query: 71 LCVQ----DNTWSITCPLCRKVTAVP---GGLICSLRDHEA 104
Q ++ CP CR+ TAVP +C+ R +A
Sbjct: 83 AAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQLQA 123
>gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 46.2 bits (108), Expect = 2e-05
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 12 PISAGATTTTTAVAPAGGHSGSTECDLECLVCREPY-SCPRLPKLLACQHAFCAICLKLL 70
P SAG+ + P S LEC +C Y + + PK L+C H FC CL L
Sbjct: 28 PSSAGSPRS-----PGTPGSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARL 82
Query: 71 LCVQ----DNTWSITCPLCRKVTAVP---GGLICSLRDHEA 104
Q ++ CP CR+ TAVP +C+ R +A
Sbjct: 83 AAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQLQA 123
>gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 46.2 bits (108), Expect = 2e-05
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 12 PISAGATTTTTAVAPAGGHSGSTECDLECLVCREPY-SCPRLPKLLACQHAFCAICLKLL 70
P SAG+ + P S LEC +C Y + + PK L+C H FC CL L
Sbjct: 28 PSSAGSPRS-----PGTPGSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARL 82
Query: 71 LCVQ----DNTWSITCPLCRKVTAVP---GGLICSLRDHEA 104
Q ++ CP CR+ TAVP +C+ R +A
Sbjct: 83 AAAQPVGRPGGEAVPCPFCRQPTAVPPAGAPALCTSRQLQA 123
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 45.4 bits (106), Expect = 4e-05
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 14 SAGATTTTTAVAPAGGHSGSTECDLECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCV 73
+A A+ + A +PAGG + + E C VCRE R P+LL C H+ C+ CL
Sbjct: 39 AASASASAAASSPAGGGAEALELLEHCGVCRERLRPEREPRLLPCLHSACSACLGPAAPA 98
Query: 74 QDNTWS----------ITCPLCRK 87
N+ + CP+C++
Sbjct: 99 AANSSGDGGAAGDGTVVDCPVCKQ 122
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
Length = 744
Score = 42.7 bits (99), Expect = 3e-04
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 38 LECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAVPGGLIC 97
L C +C E Y + PK+L C H FC CL+ + ++ +++CP+CR+ + +P +
Sbjct: 21 LICSICLERY---KNPKVLPCLHTFCERCLQNY--IPAHSLTLSCPVCRQTSILPEKGVA 75
Query: 98 SLRDH 102
+L+++
Sbjct: 76 ALQNN 80
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
Length = 771
Score = 42.7 bits (99), Expect = 3e-04
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 38 LECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAVPGGLIC 97
L C +C E Y + PK+L C H FC CL+ + ++ +++CP+CR+ + +P +
Sbjct: 48 LICSICLERY---KNPKVLPCLHTFCERCLQNY--IPAHSLTLSCPVCRQTSILPEKGVA 102
Query: 98 SLRDH 102
+L+++
Sbjct: 103 ALQNN 107
>gi|153791360 ret finger protein-like 4B [Homo sapiens]
Length = 263
Score = 42.4 bits (98), Expect = 3e-04
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 35 ECDLECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAVP 92
+ +L C VC + +SC L+C H FC C++ + ++++ + CPLCR V VP
Sbjct: 6 QAELSCPVCLDFFSCSIS---LSCTHVFCFDCIQRYI-LENHDFRAMCPLCRDVVKVP 59
>gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens]
Length = 410
Score = 42.0 bits (97), Expect = 4e-04
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 35 ECDLECLVCREPYSCPRLPKLLACQHAFCAICLKLLL--CVQDNTW---SITCPLCRKVT 89
E DL C +C + PR+ L C H FC CL+ +L V+++ W CP CRK T
Sbjct: 8 EEDLTCPICCSLFDDPRV---LPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKET 64
Query: 90 AVPGGLICSLRDHEAVVGQLAQPCTEVSLCPQ 121
+ G I SL+ + ++ G + + ++ + P+
Sbjct: 65 SATG--INSLQVNYSLKG-IVEKYNKIKISPK 93
>gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 42.0 bits (97), Expect = 4e-04
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 35 ECDLECLVCREPYSCPRLPKLLACQHAFCAICLKLLL--CVQDNTW---SITCPLCRKVT 89
E DL C +C + PR+ L C H FC CL+ +L V+++ W CP CRK T
Sbjct: 5 EEDLTCPICCSLFDDPRV---LPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKET 61
Query: 90 AVPGGLICSLRDHEAVVGQLAQPCTEVSLCPQ 121
+ G I SL+ + ++ G + + ++ + P+
Sbjct: 62 SATG--INSLQVNYSLKG-IVEKYNKIKISPK 90
>gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 42.0 bits (97), Expect = 4e-04
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 35 ECDLECLVCREPYSCPRLPKLLACQHAFCAICLKLLL--CVQDNTW---SITCPLCRKVT 89
E DL C +C + PR+ L C H FC CL+ +L V+++ W CP CRK T
Sbjct: 5 EEDLTCPICCSLFDDPRV---LPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKET 61
Query: 90 AVPGGLICSLRDHEAVVGQLAQPCTEVSLCPQ 121
+ G I SL+ + ++ G + + ++ + P+
Sbjct: 62 SATG--INSLQVNYSLKG-IVEKYNKIKISPK 90
>gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 42.0 bits (97), Expect = 4e-04
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 35 ECDLECLVCREPYSCPRLPKLLACQHAFCAICLKLLL--CVQDNTW---SITCPLCRKVT 89
E DL C +C + PR+ L C H FC CL+ +L V+++ W CP CRK T
Sbjct: 5 EEDLTCPICCSLFDDPRV---LPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKET 61
Query: 90 AVPGGLICSLRDHEAVVGQLAQPCTEVSLCPQ 121
+ G I SL+ + ++ G + + ++ + P+
Sbjct: 62 SATG--INSLQVNYSLKG-IVEKYNKIKISPK 90
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 41.6 bits (96), Expect = 6e-04
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 25 APAGGHSGSTECDLECLVCREPYSCP-RLPKLLACQHAFCAICL-KLLLCVQDNTWSITC 82
+P G +ECL+C + +LPK L C H FC CL +L L ++ C
Sbjct: 49 SPGSGPILPPASPVECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGGNAVAC 108
Query: 83 PLCRKVT 89
P+CR T
Sbjct: 109 PVCRAPT 115
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 41.6 bits (96), Expect = 6e-04
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 25 APAGGHSGSTECDLECLVCREPYSCP-RLPKLLACQHAFCAICL-KLLLCVQDNTWSITC 82
+P G +ECL+C + +LPK L C H FC CL +L L ++ C
Sbjct: 49 SPGSGPILPPASPVECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGGNAVAC 108
Query: 83 PLCRKVT 89
P+CR T
Sbjct: 109 PVCRAPT 115
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 41.6 bits (96), Expect = 6e-04
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 25 APAGGHSGSTECDLECLVCREPYSCP-RLPKLLACQHAFCAICL-KLLLCVQDNTWSITC 82
+P G +ECL+C + +LPK L C H FC CL +L L ++ C
Sbjct: 49 SPGSGPILPPASPVECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGGNAVAC 108
Query: 83 PLCRKVT 89
P+CR T
Sbjct: 109 PVCRAPT 115
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 41.6 bits (96), Expect = 6e-04
Identities = 28/72 (38%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 15 AGATTTTTAVAPAGGHSGSTECDLECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCVQ 74
A A PAGG SG E C +C E Y P + +C H FC CL+ L V
Sbjct: 9 ASAQQRQPPAGPAGGDSG-LEAQYTCPICLEVYHRP--VAIGSCGHTFCGECLQPCLQVP 65
Query: 75 DNTWSITCPLCR 86
S CPLCR
Sbjct: 66 ----SPLCPLCR 73
>gi|119220603 ring finger protein 208 [Homo sapiens]
Length = 261
Score = 41.2 bits (95), Expect = 7e-04
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 38 LECLVCREPYSCP-RLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAV 91
LEC C Y+ R P++L+C H+ C CL++L I+CP CR+ T +
Sbjct: 141 LECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFISCPTCRRETVL 195
>gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens]
Length = 444
Score = 40.0 bits (92), Expect = 0.002
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 34 TECDLECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKV 88
TE C +C+ + R P +L CQH FC CL L L + TCPLCR V
Sbjct: 378 TEAGDICAICQAEF---REPLILLCQHVFCEECLCLWLDRER-----TCPLCRSV 424
>gi|27436877 tripartite motif-containing 59 [Homo sapiens]
Length = 403
Score = 40.0 bits (92), Expect = 0.002
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 35 ECDLECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCVQDNTW-------SITCPLCRK 87
E +L C +C YS P++L C H FC CL+ +L N + + CP CR
Sbjct: 5 EEELTCPIC---YSIFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCRS 61
Query: 88 VTAV-PGGL 95
+T + P G+
Sbjct: 62 ITEIAPTGI 70
>gi|33859668 Rabring 7 [Homo sapiens]
Length = 304
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 38 LECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRK 87
LEC VC+E Y+ + L C H F + C+ L + D TCP+CRK
Sbjct: 226 LECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHD-----TCPVCRK 270
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 39.7 bits (91), Expect = 0.002
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 25 APAGGHSGSTECDLECLVCREPYSCPRLPKLLACQHAFCAICLK--LLLCVQDNTWSITC 82
A GG G+ E +EC +C R P+LL+C H C CL+ L L + ++ I+C
Sbjct: 106 AAEGGGPGAEE--VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISC 163
Query: 83 PLC 85
P C
Sbjct: 164 PEC 166
>gi|30794216 tripartite motif-containing 56 [Homo sapiens]
Length = 755
Score = 39.7 bits (91), Expect = 0.002
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 18/94 (19%)
Query: 38 LECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAVPGGLIC 97
L C +C E R PK L C H +C CL L + + CP CR+ VP +
Sbjct: 19 LACKICLEQL---RAPKTLPCLHTYCQDCLAQLA----DGGRVRCPECRETVPVPPEGVA 71
Query: 98 SLRDHEAVVGQL----AQPCTEV-------SLCP 120
S + + V G L A+ C ++ +LCP
Sbjct: 72 SFKTNFFVNGLLDLVKARACGDLRAGKPACALCP 105
>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
Length = 882
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 38 LECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCR 86
LEC VC E K+L CQH FC CL+ ++C + + CP CR
Sbjct: 55 LECSVCLERLDTTA--KVLPCQHTFCRRCLESIVC---SRHELRCPECR 98
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.137 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,752,054
Number of Sequences: 37866
Number of extensions: 461354
Number of successful extensions: 2253
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 186
Number of HSP's that attempted gapping in prelim test: 2039
Number of HSP's gapped (non-prelim): 340
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.