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Search of human proteins with 94721324
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94721324 non-SMC element 1 homolog [Homo sapiens]
(266 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94721324 non-SMC element 1 homolog [Homo sapiens] 544 e-155
gi|33188459 B-Raf [Homo sapiens] 40 0.003
gi|4506401 v-raf-1 murine leukemia viral oncogene homolog 1 [Hom... 38 0.010
gi|231573214 zinc finger protein 294 [Homo sapiens] 37 0.014
gi|4502193 v-raf murine sarcoma 3611 viral oncogene homolog [Hom... 37 0.014
gi|4826643 annexin A3 [Homo sapiens] 35 0.068
gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo s... 34 0.12
gi|30089960 CDC42-binding protein kinase alpha isoform A [Homo s... 34 0.12
gi|7706091 bifunctional apoptosis regulator [Homo sapiens] 34 0.15
gi|71043932 zinc finger, SWIM domain containing 2 [Homo sapiens] 33 0.20
gi|89363020 nuclear transcription factor, X-box binding-like 1 [... 33 0.26
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 32 0.75
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 32 0.75
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 32 0.75
gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 32 0.75
gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 32 0.75
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 32 0.75
gi|122937345 myosin VB [Homo sapiens] 31 1.3
gi|40807469 TRAF interacting protein [Homo sapiens] 31 1.3
gi|27436927 synoviolin 1 isoform b [Homo sapiens] 30 1.7
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 30 1.7
gi|38788260 bromodomain PHD finger transcription factor isoform ... 30 1.7
gi|38788274 bromodomain PHD finger transcription factor isoform ... 30 1.7
gi|4503313 diacylglycerol kinase epsilon [Homo sapiens] 30 2.2
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 30 2.2
gi|4506067 protein kinase C, alpha [Homo sapiens] 30 2.9
gi|22212927 nuclear transcription factor, X-box binding 1 isofor... 30 2.9
gi|22212925 nuclear transcription factor, X-box binding 1 isofor... 30 2.9
gi|21361137 nuclear transcription factor, X-box binding 1 isofor... 30 2.9
gi|11545757 nuclear RNA export factor 3 [Homo sapiens] 30 2.9
>gi|94721324 non-SMC element 1 homolog [Homo sapiens]
Length = 266
Score = 544 bits (1402), Expect = e-155
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MQGSTRRMGVMTDVHRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNI 60
MQGSTRRMGVMTDVHRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNI
Sbjct: 1 MQGSTRRMGVMTDVHRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNI 60
Query: 61 NSVLESLYIEIKRGVTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSE 120
NSVLESLYIEIKRGVTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSE
Sbjct: 61 NSVLESLYIEIKRGVTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSE 120
Query: 121 TGFASSTNILNLVDQLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYI 180
TGFASSTNILNLVDQLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYI
Sbjct: 121 TGFASSTNILNLVDQLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYI 180
Query: 181 RETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 240
RETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP
Sbjct: 181 RETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 240
Query: 241 KVFDPEKERESGVLKSNKKSLRSRQH 266
KVFDPEKERESGVLKSNKKSLRSRQH
Sbjct: 241 KVFDPEKERESGVLKSNKKSLRSRQH 266
>gi|33188459 B-Raf [Homo sapiens]
Length = 766
Score = 39.7 bits (91), Expect = 0.003
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 158 WLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPC 215
WL +E + L ++R+T+ + C+ C LL QG C+TCG + H C
Sbjct: 216 WLTGEELHVEVLENVPLTTHNFVRKTF-FTLAFCDFCRKLLFQGFRCQTCGYKFHQRC 272
>gi|4506401 v-raf-1 murine leukemia viral oncogene homolog 1 [Homo
sapiens]
Length = 648
Score = 37.7 bits (86), Expect = 0.010
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 129 ILNLVDQLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAV 188
+ L+ + KGKK R L LI +E + L + R+T+ +
Sbjct: 98 VFRLLHEHKGKKAR-------LDWNTDAASLIGEELQVDFLDHVPLTTHNFARKTFLK-L 149
Query: 189 KICNICHSLLIQGQSCETCGIRMHLPCVAK 218
C+IC L+ G C+TCG + H C K
Sbjct: 150 AFCDICQKFLLNGFRCQTCGYKFHEHCSTK 179
>gi|231573214 zinc finger protein 294 [Homo sapiens]
Length = 1812
Score = 37.4 bits (85), Expect = 0.014
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 186 DAVKICNICHSLL------IQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 233
+ V+ C IC S++ + ++C TC + H C+ K+F S+ + CP C +
Sbjct: 1756 EGVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRE 1809
>gi|4502193 v-raf murine sarcoma 3611 viral oncogene homolog [Homo
sapiens]
Length = 606
Score = 37.4 bits (85), Expect = 0.014
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 174 LEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAK 218
L M ++R+T+ ++ C+ C L G C+TCG + H C +K
Sbjct: 96 LTMHNFVRKTF-FSLAFCDFCLKFLFHGFRCQTCGYKFHQHCSSK 139
>gi|4826643 annexin A3 [Homo sapiens]
Length = 323
Score = 35.0 bits (79), Expect = 0.068
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 85 ALVNLATTSISKMATDFAENELDLFRKALELIIDSETGFASSTNILNLVD-----QLKGK 139
AL+ + TT S+ D ++ +++K+L I SET +L L D LK
Sbjct: 112 ALIEILTTRTSRQMKDISQAYYTVYKKSLGDDISSETSGDFRKALLTLADGRRDESLKVD 171
Query: 140 KMRKKEAEQVLQKFVQNKWLIEKEGEFT 167
+ K+ Q+L K +N+W + E +FT
Sbjct: 172 EHLAKQDAQILYKAGENRWGTD-EDKFT 198
>gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo
sapiens]
Length = 1719
Score = 34.3 bits (77), Expect = 0.12
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 191 CNICHSLLI----QGQSCETCGIRMHLPCVAKYFQSNAEPRCP 229
C+ C SL++ QG SCE CG H+ CV K A CP
Sbjct: 1013 CHQCTSLMVGLIRQGCSCEVCGFSCHITCVNK-----APTTCP 1050
>gi|30089960 CDC42-binding protein kinase alpha isoform A [Homo
sapiens]
Length = 1638
Score = 34.3 bits (77), Expect = 0.12
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 191 CNICHSLLI----QGQSCETCGIRMHLPCVAKYFQSNAEPRCP 229
C+ C SL++ QG SCE CG H+ CV K A CP
Sbjct: 932 CHQCTSLMVGLIRQGCSCEVCGFSCHITCVNK-----APTTCP 969
>gi|7706091 bifunctional apoptosis regulator [Homo sapiens]
Length = 450
Score = 33.9 bits (76), Expect = 0.15
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 174 LEMEQYIRETYPD---AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 230
LE ++ ++ T P + C+ C+ +L+ + CG C+A ++ S+ + CP
Sbjct: 14 LERDEPLKSTGPQISVSEFSCHCCYDILVNPTTLN-CGHSFCRHCLALWWASSKKTECPE 72
Query: 231 CNDYWPHEIPKV 242
C + W PKV
Sbjct: 73 CREKW-EGFPKV 83
>gi|71043932 zinc finger, SWIM domain containing 2 [Homo sapiens]
Length = 633
Score = 33.5 bits (75), Expect = 0.20
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 174 LEMEQYIRETYPDAVKICNICHSLLIQGQSCET-----CGIRMHLPC--VAKYFQSNAEP 226
+E + YI++ D+ IC+IC LL++ + T CG +H+ C + +QS +
Sbjct: 130 VEEDGYIKQKEIDSEDICSICQELLLEKKLPVTFCRFGCGNSIHIKCMKILANYQSTSNT 189
Query: 227 ---RCPHC 231
+CP C
Sbjct: 190 SMLKCPLC 197
>gi|89363020 nuclear transcription factor, X-box binding-like 1
[Homo sapiens]
Length = 911
Score = 33.1 bits (74), Expect = 0.26
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 171 RAILEMEQYIRETYPDAVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKY 219
R + +QY+ E + C IC + + + Q SC C H+PC+ K+
Sbjct: 140 RELERTKQYVNEAFQAGAMTCLICIASVKRNQAVWSCSGCFCIFHMPCIQKW 191
>gi|33598931 scavenger receptor class F, member 1 isoform 3
precursor [Homo sapiens]
Length = 569
Score = 31.6 bits (70), Expect = 0.75
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 203 SCETC-----GIRMHLPCVAKYFQSNAEPRCPHC 231
SCE+C G + PC+ F + E +CPHC
Sbjct: 280 SCESCEPGWNGTQCQQPCLPGTFGESCEQQCPHC 313
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 31.6 bits (70), Expect = 0.75
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 203 SCETC-----GIRMHLPCVAKYFQSNAEPRCPHC 231
SCE+C G + PC+ F + E +CPHC
Sbjct: 280 SCESCEPGWNGTQCQQPCLPGTFGESCEQQCPHC 313
>gi|145309306 scavenger receptor class F, member 1 isoform 5
precursor [Homo sapiens]
Length = 744
Score = 31.6 bits (70), Expect = 0.75
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 203 SCETC-----GIRMHLPCVAKYFQSNAEPRCPHC 231
SCE+C G + PC+ F + E +CPHC
Sbjct: 280 SCESCEPGWNGTQCQQPCLPGTFGESCEQQCPHC 313
>gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 2 [Homo sapiens]
Length = 856
Score = 31.6 bits (70), Expect = 0.75
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 121 TGFASSTNILNLVDQLKGKKMRKKEAEQVLQKF---VQNKWLIEKEGEFTLHGRAILEME 177
T F +LVD+LK ++ R+K+ E+ LQ+ VQ K+ ++ + +L +
Sbjct: 115 TQFVQKKEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLS 174
Query: 178 QYIRETYPDAVKI 190
+ + ET P+A ++
Sbjct: 175 REMLETGPEAERL 187
>gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 1 [Homo sapiens]
Length = 906
Score = 31.6 bits (70), Expect = 0.75
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 121 TGFASSTNILNLVDQLKGKKMRKKEAEQVLQKF---VQNKWLIEKEGEFTLHGRAILEME 177
T F +LVD+LK ++ R+K+ E+ LQ+ VQ K+ ++ + +L +
Sbjct: 115 TQFVQKKEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLS 174
Query: 178 QYIRETYPDAVKI 190
+ + ET P+A ++
Sbjct: 175 REMLETGPEAERL 187
>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 3 [Homo sapiens]
Length = 970
Score = 31.6 bits (70), Expect = 0.75
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 121 TGFASSTNILNLVDQLKGKKMRKKEAEQVLQKF---VQNKWLIEKEGEFTLHGRAILEME 177
T F +LVD+LK ++ R+K+ E+ LQ+ VQ K+ ++ + +L +
Sbjct: 115 TQFVQKKEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLS 174
Query: 178 QYIRETYPDAVKI 190
+ + ET P+A ++
Sbjct: 175 REMLETGPEAERL 187
>gi|122937345 myosin VB [Homo sapiens]
Length = 1848
Score = 30.8 bits (68), Expect = 1.3
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 121 TGFASSTNILNLVDQLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYI 180
TG NI L + L+G+ + + A Q ++ +Q L+ Q
Sbjct: 1708 TGMQLRYNISQLEEWLRGRNLHQSGAVQTMEPLIQAAQLL-----------------QLK 1750
Query: 181 RETYPDAVKICNICHSLLIQ 200
++T DA IC++C SL Q
Sbjct: 1751 KKTQEDAEAICSLCTSLSTQ 1770
>gi|40807469 TRAF interacting protein [Homo sapiens]
Length = 469
Score = 30.8 bits (68), Expect = 1.3
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 190 ICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCPHC 231
+C IC + CG HL C+ ++F++ CP C
Sbjct: 6 LCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQC 49
>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
Length = 617
Score = 30.4 bits (67), Expect = 1.7
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 171 RAILEMEQYIRETYPDAVK----ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEP 226
RAI M + P+ ++ +C IC ++ G C H C+ +FQ +
Sbjct: 267 RAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQ--RQQ 324
Query: 227 RCPHC 231
CP C
Sbjct: 325 TCPTC 329
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 30.4 bits (67), Expect = 1.7
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 171 RAILEMEQYIRETYPDAVK----ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEP 226
RAI M + P+ ++ +C IC ++ G C H C+ +FQ +
Sbjct: 267 RAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQ--RQQ 324
Query: 227 RCPHC 231
CP C
Sbjct: 325 TCPTC 329
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 30.4 bits (67), Expect = 1.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 191 CNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKVFDPEKE 248
C +CH L G CETC HL CV + E C H++P V D E
Sbjct: 393 CRVCHKL---GDLLCCETCSAVYHLECVKPPLEEVPEDEW-QCEVCVAHKVPGVTDCVAE 448
Query: 249 RESGVLKSNKKSLR 262
++ NK +R
Sbjct: 449 -----IQKNKPYIR 457
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 30.4 bits (67), Expect = 1.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 191 CNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKVFDPEKE 248
C +CH L G CETC HL CV + E C H++P V D E
Sbjct: 393 CRVCHKL---GDLLCCETCSAVYHLECVKPPLEEVPEDEW-QCEVCVAHKVPGVTDCVAE 448
Query: 249 RESGVLKSNKKSLR 262
++ NK +R
Sbjct: 449 -----IQKNKPYIR 457
>gi|4503313 diacylglycerol kinase epsilon [Homo sapiens]
Length = 567
Score = 30.0 bits (66), Expect = 2.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 191 CNICHSLLIQGQSCETCGIRMHLPCVAK 218
C +C ++QG C+ CG+R+ C+ K
Sbjct: 74 CCVCAQHILQGAFCDCCGLRVDEGCLRK 101
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 30.0 bits (66), Expect = 2.2
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 191 CNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPR--CPHCNDYWPHEIPKVFDP 245
C +C QG C+TC HL C+ + E + CPHC PK D
Sbjct: 346 CEVCQ----QGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDD 401
Query: 246 EKE 248
E+E
Sbjct: 402 EEE 404
>gi|4506067 protein kinase C, alpha [Homo sapiens]
Length = 672
Score = 29.6 bits (65), Expect = 2.9
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 191 CNICHSLLI----QGQSCETCGIRMHLPCV 216
C+ C SLL QG C+TC + +H CV
Sbjct: 115 CDHCGSLLYGLIHQGMKCDTCDMNVHKQCV 144
>gi|22212927 nuclear transcription factor, X-box binding 1 isoform 3
[Homo sapiens]
Length = 833
Score = 29.6 bits (65), Expect = 2.9
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 16/78 (20%)
Query: 176 MEQYIRETYPDAVKICNICHSLL---IQGQSCETCGIRMHLPCVAKYFQSNAEP------ 226
+EQ E Y C +C L+ SC++C HL C+ K+ +S A
Sbjct: 348 IEQLTTEKYE-----CMVCCELVRVTAPVWSCQSCYHVFHLNCIKKWARSPASQADGQSG 402
Query: 227 -RCPHCNDYWPHEIPKVF 243
RCP C + H +P +
Sbjct: 403 WRCPACQNVSAH-VPNTY 419
>gi|22212925 nuclear transcription factor, X-box binding 1 isoform 2
[Homo sapiens]
Length = 1024
Score = 29.6 bits (65), Expect = 2.9
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 16/78 (20%)
Query: 176 MEQYIRETYPDAVKICNICHSLL---IQGQSCETCGIRMHLPCVAKYFQSNAEP------ 226
+EQ E Y C +C L+ SC++C HL C+ K+ +S A
Sbjct: 348 IEQLTTEKYE-----CMVCCELVRVTAPVWSCQSCYHVFHLNCIKKWARSPASQADGQSG 402
Query: 227 -RCPHCNDYWPHEIPKVF 243
RCP C + H +P +
Sbjct: 403 WRCPACQNVSAH-VPNTY 419
>gi|21361137 nuclear transcription factor, X-box binding 1 isoform 1
[Homo sapiens]
Length = 1120
Score = 29.6 bits (65), Expect = 2.9
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 16/78 (20%)
Query: 176 MEQYIRETYPDAVKICNICHSLL---IQGQSCETCGIRMHLPCVAKYFQSNAEP------ 226
+EQ E Y C +C L+ SC++C HL C+ K+ +S A
Sbjct: 348 IEQLTTEKYE-----CMVCCELVRVTAPVWSCQSCYHVFHLNCIKKWARSPASQADGQSG 402
Query: 227 -RCPHCNDYWPHEIPKVF 243
RCP C + H +P +
Sbjct: 403 WRCPACQNVSAH-VPNTY 419
>gi|11545757 nuclear RNA export factor 3 [Homo sapiens]
Length = 531
Score = 29.6 bits (65), Expect = 2.9
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 8 MGVMTDVHRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLE 65
M DVH + +M+ G +++W C DR+ D +NINS+LE
Sbjct: 247 MAASLDVHEENIPTVMSAGEMDKWKGIEPGEKCA---DRSPVCTTFSDTSSNINSILE 301
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,439,757
Number of Sequences: 37866
Number of extensions: 401135
Number of successful extensions: 1280
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1261
Number of HSP's gapped (non-prelim): 56
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.