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Search of human proteins with 94536778
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94536778 DCN1, defective in cullin neddylation 1, domain
containing 4 isoform 1 [Homo sapiens]
(292 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94536778 DCN1, defective in cullin neddylation 1, domain cont... 608 e-174
gi|94536780 DCN1, defective in cullin neddylation 1, domain cont... 518 e-147
gi|14150015 DCN1, defective in cullin neddylation 1, domain cont... 342 2e-94
gi|62122952 DCN1, defective in cullin neddylation 1, domain cont... 141 6e-34
gi|36030883 RP42 homolog [Homo sapiens] 135 6e-32
gi|27735047 DCN1, defective in cullin neddylation 1, domain cont... 111 7e-25
gi|168229156 NFKB activating protein [Homo sapiens] 32 0.86
gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F... 32 0.86
gi|7427519 minichromosome maintenance complex component 6 [Homo ... 31 1.1
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 31 1.1
gi|117320550 hypothetical protein LOC400566 [Homo sapiens] 30 1.9
gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens] 30 3.3
gi|215982794 myosin VA isoform 2 [Homo sapiens] 29 4.3
gi|215982791 myosin VA isoform 1 [Homo sapiens] 29 4.3
gi|69354859 ADAM metallopeptidase domain 8 precursor [Homo sapiens] 28 7.3
gi|19924099 synapsin I isoform Ia [Homo sapiens] 28 7.3
gi|19924097 synapsin I isoform Ib [Homo sapiens] 28 7.3
gi|110630018 eukaryotic translation initiation factor 4 gamma, 2... 28 7.3
gi|4503539 eukaryotic translation initiation factor 4 gamma, 2 i... 28 7.3
gi|32481206 lactase-phlorizin hydrolase preproprotein [Homo sapi... 28 9.5
gi|189571679 NudC domain containing 1 isoform 2 [Homo sapiens] 28 9.5
gi|189571677 NudC domain containing 1 isoform 1 [Homo sapiens] 28 9.5
>gi|94536778 DCN1, defective in cullin neddylation 1, domain
containing 4 isoform 1 [Homo sapiens]
Length = 292
Score = 608 bits (1567), Expect = e-174
Identities = 292/292 (100%), Positives = 292/292 (100%)
Query: 1 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV 60
MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV
Sbjct: 1 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV 60
Query: 61 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV 120
MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV
Sbjct: 61 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV 120
Query: 121 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL 180
GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL
Sbjct: 121 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL 180
Query: 181 DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE 240
DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE
Sbjct: 181 DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE 240
Query: 241 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS 292
QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
Sbjct: 241 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS 292
>gi|94536780 DCN1, defective in cullin neddylation 1, domain
containing 4 isoform 2 [Homo sapiens]
Length = 257
Score = 518 bits (1333), Expect = e-147
Identities = 257/292 (88%), Positives = 257/292 (88%), Gaps = 35/292 (11%)
Query: 1 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV 60
MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV
Sbjct: 1 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV 60
Query: 61 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV 120
MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV
Sbjct: 61 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV 120
Query: 121 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL 180
GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL
Sbjct: 121 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL 180
Query: 181 DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE 240
DYLRSFLNDSTNFKLIYRYAFDFAR
Sbjct: 181 DYLRSFLNDSTNFKLIYRYAFDFAR----------------------------------- 205
Query: 241 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS 292
QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS
Sbjct: 206 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS 257
>gi|14150015 DCN1, defective in cullin neddylation 1, domain
containing 5 [Homo sapiens]
Length = 237
Score = 342 bits (878), Expect = 2e-94
Identities = 165/237 (69%), Positives = 194/237 (81%), Gaps = 5/237 (2%)
Query: 61 MPPRKKRRP-----ASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAG 115
MP +KKR+ A +D KK + S R R+ + EE FSSK+CL WFYEYAG
Sbjct: 1 MPVKKKRKSPGVAAAVAEDGGLKKCKISSYCRSQPPARLISGEEHFSSKKCLAWFYEYAG 60
Query: 116 TDDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEK 175
D+VVGPEGMEKFCEDIGVEPEN++MLVLAWKL+A++MG+FT +EWLKGMTSLQCD TEK
Sbjct: 61 PDEVVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEK 120
Query: 176 LRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVF 235
L+N D+LRS LND ++FK IYRYAFDFAR+KDQRSLDI+TAK ML LLLG+ WPLF VF
Sbjct: 121 LQNKFDFLRSQLNDISSFKNIYRYAFDFARDKDQRSLDIDTAKSMLALLLGRTWPLFSVF 180
Query: 236 HQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS 292
+Q+LEQSKY+V+NKDQW NVLEFSRT++ DLSNYDEDGAWPVLLDEFVEW K +Q S
Sbjct: 181 YQYLEQSKYRVMNKDQWYNVLEFSRTVHADLSNYDEDGAWPVLLDEFVEWQKVRQTS 237
>gi|62122952 DCN1, defective in cullin neddylation 1, domain
containing 2 [Homo sapiens]
Length = 259
Score = 141 bits (356), Expect = 6e-34
Identities = 72/205 (35%), Positives = 117/205 (57%), Gaps = 2/205 (0%)
Query: 83 DSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDV--VGPEGMEKFCEDIGVEPENVV 140
DS ++ DS ++ A K+ + Y D +G +G+++FC+D+ ++P ++
Sbjct: 42 DSFFQNPDSLHRESMRNAVDKKKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASIS 101
Query: 141 MLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYA 200
+LV+AWK A F+ +E+L GMT L CD+ EKL+ L L L D+ FK Y++
Sbjct: 102 VLVIAWKFRAATQCEFSRKEFLDGMTELGCDSMEKLKALLPRLEQELKDTAKFKDFYQFT 161
Query: 201 FDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLEQSKYKVINKDQWCNVLEFSR 260
F FA+ Q+ LD+ A L+L + +++ FL + + I +D W +L+F
Sbjct: 162 FTFAKNPGQKGLDLEMAVAYWKLVLSGRFKFLDLWNTFLMEHHKRSIPRDTWNLLLDFGN 221
Query: 261 TINLDLSNYDEDGAWPVLLDEFVEW 285
I D+SNYDE+GAWPVL+D+FVE+
Sbjct: 222 MIADDMSNYDEEGAWPVLIDDFVEY 246
>gi|36030883 RP42 homolog [Homo sapiens]
Length = 259
Score = 135 bits (339), Expect = 6e-32
Identities = 63/175 (36%), Positives = 109/175 (62%)
Query: 111 YEYAGTDDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQC 170
Y+ ++ +G +G+++FC+D+ ++P ++ +L++AWK A F+ QE++ GMT L C
Sbjct: 72 YKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGC 131
Query: 171 DTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWP 230
D+ EKL+ + + L + FK Y++ F+FA+ Q+ LD+ A L+L +
Sbjct: 132 DSIEKLKAQIPKMEQELKEPGRFKDFYQFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFK 191
Query: 231 LFPVFHQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEW 285
++++FL + + I KD W +L+FS I D+SNYDE+GAWPVL+D+FVE+
Sbjct: 192 FLDLWNKFLLEHHKRSIPKDTWNLLLDFSTMIADDMSNYDEEGAWPVLIDDFVEF 246
>gi|27735047 DCN1, defective in cullin neddylation 1, domain
containing 3 [Homo sapiens]
Length = 304
Score = 111 bits (278), Expect = 7e-25
Identities = 72/204 (35%), Positives = 103/204 (50%), Gaps = 10/204 (4%)
Query: 95 KTEEEAFSSKRCLEWFYEYAGT-DDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNM 153
K+ E S +R E F Y +D + EGME+FC D+ V+P +L+LAWK A M
Sbjct: 80 KSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATM 139
Query: 154 GYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFA--REKDQRS 211
FT +E+ G ++ D+ + + L + FK +YR+ F F E+ QRS
Sbjct: 140 CKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRS 199
Query: 212 LDINTAKCMLGLLLGKIWPLFPVFHQFL-----EQSKYKVINKDQWCNVLEFSRTINLDL 266
L A + L+ + P PV Q+L S K I++D W L F++ I DL
Sbjct: 200 LHREIAIALWKLVFTQNNP--PVLDQWLNFLTENPSGIKGISRDTWNMFLNFTQVIGPDL 257
Query: 267 SNYDEDGAWPVLLDEFVEWYKDKQ 290
SNY ED AWP L D FVEW +++
Sbjct: 258 SNYSEDEAWPSLFDTFVEWEMERR 281
>gi|168229156 NFKB activating protein [Homo sapiens]
Length = 415
Score = 31.6 bits (70), Expect = 0.86
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 43 HQTGSLRSCSSSDCFNKVMPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFS 102
H+ S S S SD KRR KK Y+K S + + E S
Sbjct: 206 HKKYSEDSDSDSDSETDSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKKSRKESSDSS 265
Query: 103 SKRCLEWFYEYAGTD--------DVVGPE 123
SK E F E D D++GPE
Sbjct: 266 SKESQEEFLENPWKDRTKAEEPSDLIGPE 294
>gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F
subunit [Homo sapiens]
Length = 1977
Score = 31.6 bits (70), Expect = 0.86
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 33 NLTEDIGQDDHQTGSLRSCSSSDCFNKVMPPRKKRR 68
++TE G +D + G+L SC+ C NK+M R RR
Sbjct: 477 SMTETQGDEDEEEGALASCTR--CLNKIMKTRVCRR 510
>gi|7427519 minichromosome maintenance complex component 6 [Homo
sapiens]
Length = 821
Score = 31.2 bits (69), Expect = 1.1
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 12 LNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDC-FNKVMPPRKKRRPA 70
+N H + A ++ I N N EDI Q+ SLR S C + ++ ++
Sbjct: 683 INGHADSPAPVNGI----NGYN--EDINQESAPKASLRLGFSEYCRISNLIVLHLRKVEE 736
Query: 71 SGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLE 108
D+ + K+S + Y K + I +EEE + KR +E
Sbjct: 737 EEDESALKRSELVNWYLKEIESEIDSEEELINKKRIIE 774
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 49 RSCSSSDCFNKVMPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKT 96
RS SSS PPR +R P+ A+KSR R S R KT
Sbjct: 1708 RSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKT 1755
>gi|117320550 hypothetical protein LOC400566 [Homo sapiens]
Length = 433
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 39 GQDDHQTGSLRSCSSSDCFNKVMPPRKKRRPASGDDLSAKKSRH 82
G D HQ+ SL+S S F+ ++ P K+R P S + +H
Sbjct: 100 GDDKHQSQSLKSQPLSSSFHDILSPCKERGPKPEHRQSKVEKKH 143
>gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens]
Length = 558
Score = 29.6 bits (65), Expect = 3.3
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 202 DFAREKDQRSLDINTAKCMLGLLLGKIWP--------------LFPVFHQFLEQSKYKVI 247
D R+ + ++ TAK LL G I P +PV E+ +YK +
Sbjct: 402 DRQRDSEVNFKELRTAKMKPELLSGHIPPGHIPKPIVMPDYVAKYPVIQTDDERERYKAV 461
Query: 248 NKDQWCNVLEFSRTINLDLSNYDE 271
+DQ+ E S + L +DE
Sbjct: 462 FQDQFSEYKELSAEVQAVLRKFDE 485
>gi|215982794 myosin VA isoform 2 [Homo sapiens]
Length = 1828
Score = 29.3 bits (64), Expect = 4.3
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 137 ENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLR 184
EN +M L K+D QN Y L E L + + TEKLR+ L+ L+
Sbjct: 926 ENKIMQ-LQRKVDEQNKDYKCLVEKLTNLEGIYNSETEKLRSDLERLQ 972
>gi|215982791 myosin VA isoform 1 [Homo sapiens]
Length = 1855
Score = 29.3 bits (64), Expect = 4.3
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 137 ENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLR 184
EN +M L K+D QN Y L E L + + TEKLR+ L+ L+
Sbjct: 926 ENKIMQ-LQRKVDEQNKDYKCLVEKLTNLEGIYNSETEKLRSDLERLQ 972
>gi|69354859 ADAM metallopeptidase domain 8 precursor [Homo sapiens]
Length = 856
Score = 28.5 bits (62), Expect = 7.3
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 16 LSTLANIHKIYHTLNKLNLTEDIG-----------QDDHQTGSLRSCS-SSDCFNKVMPP 63
LST A + + + L+L E + Q +H + +C S D ++ P
Sbjct: 121 LSTCAGLRGFFQVGSDLHLIEPLDEGGEGGRHAVYQAEHLLQTAGTCGVSDDSLGSLLGP 180
Query: 64 RKKR--RPASGDDLSAKKSRHDSMYRKYDSTRIK-TEEEAFSSKRCLE 108
R RP GD L ++++R+ +Y D+ + EA R LE
Sbjct: 181 RTAAVFRPRPGDSLPSRETRYVELYVVVDNAEFQMLGSEAAVRHRVLE 228
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 28.5 bits (62), Expect = 7.3
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 174 EKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDI 214
E LRN + +RS D F LI ++AF AR D RSL I
Sbjct: 166 EVLRNGVKVVRSLKPD---FVLIRQHAFSMARNGDYRSLVI 203
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 28.5 bits (62), Expect = 7.3
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 174 EKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDI 214
E LRN + +RS D F LI ++AF AR D RSL I
Sbjct: 166 EVLRNGVKVVRSLKPD---FVLIRQHAFSMARNGDYRSLVI 203
>gi|110630018 eukaryotic translation initiation factor 4 gamma, 2
isoform 2 [Homo sapiens]
Length = 869
Score = 28.5 bits (62), Expect = 7.3
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 59 KVMPPRKKRRP--ASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLE 108
K +P R RR ++ ++ + +K RHD+++RK K E F K CLE
Sbjct: 49 KWIPARSTRRDDNSAANNSANEKERHDAIFRKVRGILNKLTPEKF-DKLCLE 99
>gi|4503539 eukaryotic translation initiation factor 4 gamma, 2
isoform 1 [Homo sapiens]
Length = 907
Score = 28.5 bits (62), Expect = 7.3
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 59 KVMPPRKKRRP--ASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLE 108
K +P R RR ++ ++ + +K RHD+++RK K E F K CLE
Sbjct: 49 KWIPARSTRRDDNSAANNSANEKERHDAIFRKVRGILNKLTPEKF-DKLCLE 99
>gi|32481206 lactase-phlorizin hydrolase preproprotein [Homo sapiens]
Length = 1927
Score = 28.1 bits (61), Expect = 9.5
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 168 LQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCML-GLLLG 226
+ CD+ +L L+ LR+ + F + + F R S ++ ++ GL+
Sbjct: 951 IACDSYHQLDADLNMLRALKVKAYRFSISWSRIFPTGRNSSINSHGVDYYNRLINGLVAS 1010
Query: 227 KIWPLFPVFHQFLEQS 242
I+P+ +FH L Q+
Sbjct: 1011 NIFPMVTLFHWDLPQA 1026
>gi|189571679 NudC domain containing 1 isoform 2 [Homo sapiens]
Length = 554
Score = 28.1 bits (61), Expect = 9.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 236 HQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLL 279
HQFLE Y I+ + +++ S ++ + L +E WP L+
Sbjct: 289 HQFLEGKLYSSIDHESSTWIIKESNSLEISLIKKNEGLTWPELV 332
>gi|189571677 NudC domain containing 1 isoform 1 [Homo sapiens]
Length = 583
Score = 28.1 bits (61), Expect = 9.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 236 HQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLL 279
HQFLE Y I+ + +++ S ++ + L +E WP L+
Sbjct: 318 HQFLEGKLYSSIDHESSTWIIKESNSLEISLIKKNEGLTWPELV 361
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,846,905
Number of Sequences: 37866
Number of extensions: 458952
Number of successful extensions: 1463
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 25
length of query: 292
length of database: 18,247,518
effective HSP length: 101
effective length of query: 191
effective length of database: 14,423,052
effective search space: 2754802932
effective search space used: 2754802932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.