BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|94536778 DCN1, defective in cullin neddylation 1, domain containing 4 isoform 1 [Homo sapiens] (292 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|94536778 DCN1, defective in cullin neddylation 1, domain cont... 608 e-174 gi|94536780 DCN1, defective in cullin neddylation 1, domain cont... 518 e-147 gi|14150015 DCN1, defective in cullin neddylation 1, domain cont... 342 2e-94 gi|62122952 DCN1, defective in cullin neddylation 1, domain cont... 141 6e-34 gi|36030883 RP42 homolog [Homo sapiens] 135 6e-32 gi|27735047 DCN1, defective in cullin neddylation 1, domain cont... 111 7e-25 gi|168229156 NFKB activating protein [Homo sapiens] 32 0.86 gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F... 32 0.86 gi|7427519 minichromosome maintenance complex component 6 [Homo ... 31 1.1 gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 31 1.1 gi|117320550 hypothetical protein LOC400566 [Homo sapiens] 30 1.9 gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens] 30 3.3 gi|215982794 myosin VA isoform 2 [Homo sapiens] 29 4.3 gi|215982791 myosin VA isoform 1 [Homo sapiens] 29 4.3 gi|69354859 ADAM metallopeptidase domain 8 precursor [Homo sapiens] 28 7.3 gi|19924099 synapsin I isoform Ia [Homo sapiens] 28 7.3 gi|19924097 synapsin I isoform Ib [Homo sapiens] 28 7.3 gi|110630018 eukaryotic translation initiation factor 4 gamma, 2... 28 7.3 gi|4503539 eukaryotic translation initiation factor 4 gamma, 2 i... 28 7.3 gi|32481206 lactase-phlorizin hydrolase preproprotein [Homo sapi... 28 9.5 gi|189571679 NudC domain containing 1 isoform 2 [Homo sapiens] 28 9.5 gi|189571677 NudC domain containing 1 isoform 1 [Homo sapiens] 28 9.5 >gi|94536778 DCN1, defective in cullin neddylation 1, domain containing 4 isoform 1 [Homo sapiens] Length = 292 Score = 608 bits (1567), Expect = e-174 Identities = 292/292 (100%), Positives = 292/292 (100%) Query: 1 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV 60 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV Sbjct: 1 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV 60 Query: 61 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV 120 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV Sbjct: 61 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV 120 Query: 121 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL 180 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL Sbjct: 121 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL 180 Query: 181 DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE 240 DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE Sbjct: 181 DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE 240 Query: 241 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS 292 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS Sbjct: 241 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS 292 >gi|94536780 DCN1, defective in cullin neddylation 1, domain containing 4 isoform 2 [Homo sapiens] Length = 257 Score = 518 bits (1333), Expect = e-147 Identities = 257/292 (88%), Positives = 257/292 (88%), Gaps = 35/292 (11%) Query: 1 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV 60 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV Sbjct: 1 MHSDAAAVNFQLNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDCFNKV 60 Query: 61 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV 120 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV Sbjct: 61 MPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDVV 120 Query: 121 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL 180 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL Sbjct: 121 GPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTL 180 Query: 181 DYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLE 240 DYLRSFLNDSTNFKLIYRYAFDFAR Sbjct: 181 DYLRSFLNDSTNFKLIYRYAFDFAR----------------------------------- 205 Query: 241 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS 292 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS Sbjct: 206 QSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS 257 >gi|14150015 DCN1, defective in cullin neddylation 1, domain containing 5 [Homo sapiens] Length = 237 Score = 342 bits (878), Expect = 2e-94 Identities = 165/237 (69%), Positives = 194/237 (81%), Gaps = 5/237 (2%) Query: 61 MPPRKKRRP-----ASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAG 115 MP +KKR+ A +D KK + S R R+ + EE FSSK+CL WFYEYAG Sbjct: 1 MPVKKKRKSPGVAAAVAEDGGLKKCKISSYCRSQPPARLISGEEHFSSKKCLAWFYEYAG 60 Query: 116 TDDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEK 175 D+VVGPEGMEKFCEDIGVEPEN++MLVLAWKL+A++MG+FT +EWLKGMTSLQCD TEK Sbjct: 61 PDEVVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEK 120 Query: 176 LRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVF 235 L+N D+LRS LND ++FK IYRYAFDFAR+KDQRSLDI+TAK ML LLLG+ WPLF VF Sbjct: 121 LQNKFDFLRSQLNDISSFKNIYRYAFDFARDKDQRSLDIDTAKSMLALLLGRTWPLFSVF 180 Query: 236 HQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEWYKDKQMS 292 +Q+LEQSKY+V+NKDQW NVLEFSRT++ DLSNYDEDGAWPVLLDEFVEW K +Q S Sbjct: 181 YQYLEQSKYRVMNKDQWYNVLEFSRTVHADLSNYDEDGAWPVLLDEFVEWQKVRQTS 237 >gi|62122952 DCN1, defective in cullin neddylation 1, domain containing 2 [Homo sapiens] Length = 259 Score = 141 bits (356), Expect = 6e-34 Identities = 72/205 (35%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 83 DSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTDDV--VGPEGMEKFCEDIGVEPENVV 140 DS ++ DS ++ A K+ + Y D +G +G+++FC+D+ ++P ++ Sbjct: 42 DSFFQNPDSLHRESMRNAVDKKKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASIS 101 Query: 141 MLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYA 200 +LV+AWK A F+ +E+L GMT L CD+ EKL+ L L L D+ FK Y++ Sbjct: 102 VLVIAWKFRAATQCEFSRKEFLDGMTELGCDSMEKLKALLPRLEQELKDTAKFKDFYQFT 161 Query: 201 FDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLEQSKYKVINKDQWCNVLEFSR 260 F FA+ Q+ LD+ A L+L + +++ FL + + I +D W +L+F Sbjct: 162 FTFAKNPGQKGLDLEMAVAYWKLVLSGRFKFLDLWNTFLMEHHKRSIPRDTWNLLLDFGN 221 Query: 261 TINLDLSNYDEDGAWPVLLDEFVEW 285 I D+SNYDE+GAWPVL+D+FVE+ Sbjct: 222 MIADDMSNYDEEGAWPVLIDDFVEY 246 >gi|36030883 RP42 homolog [Homo sapiens] Length = 259 Score = 135 bits (339), Expect = 6e-32 Identities = 63/175 (36%), Positives = 109/175 (62%) Query: 111 YEYAGTDDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQC 170 Y+ ++ +G +G+++FC+D+ ++P ++ +L++AWK A F+ QE++ GMT L C Sbjct: 72 YKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGC 131 Query: 171 DTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWP 230 D+ EKL+ + + L + FK Y++ F+FA+ Q+ LD+ A L+L + Sbjct: 132 DSIEKLKAQIPKMEQELKEPGRFKDFYQFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFK 191 Query: 231 LFPVFHQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVEW 285 ++++FL + + I KD W +L+FS I D+SNYDE+GAWPVL+D+FVE+ Sbjct: 192 FLDLWNKFLLEHHKRSIPKDTWNLLLDFSTMIADDMSNYDEEGAWPVLIDDFVEF 246 >gi|27735047 DCN1, defective in cullin neddylation 1, domain containing 3 [Homo sapiens] Length = 304 Score = 111 bits (278), Expect = 7e-25 Identities = 72/204 (35%), Positives = 103/204 (50%), Gaps = 10/204 (4%) Query: 95 KTEEEAFSSKRCLEWFYEYAGT-DDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNM 153 K+ E S +R E F Y +D + EGME+FC D+ V+P +L+LAWK A M Sbjct: 80 KSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATM 139 Query: 154 GYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFA--REKDQRS 211 FT +E+ G ++ D+ + + L + FK +YR+ F F E+ QRS Sbjct: 140 CKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRS 199 Query: 212 LDINTAKCMLGLLLGKIWPLFPVFHQFL-----EQSKYKVINKDQWCNVLEFSRTINLDL 266 L A + L+ + P PV Q+L S K I++D W L F++ I DL Sbjct: 200 LHREIAIALWKLVFTQNNP--PVLDQWLNFLTENPSGIKGISRDTWNMFLNFTQVIGPDL 257 Query: 267 SNYDEDGAWPVLLDEFVEWYKDKQ 290 SNY ED AWP L D FVEW +++ Sbjct: 258 SNYSEDEAWPSLFDTFVEWEMERR 281 >gi|168229156 NFKB activating protein [Homo sapiens] Length = 415 Score = 31.6 bits (70), Expect = 0.86 Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 8/89 (8%) Query: 43 HQTGSLRSCSSSDCFNKVMPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFS 102 H+ S S S SD KRR KK Y+K S + + E S Sbjct: 206 HKKYSEDSDSDSDSETDSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKKSRKESSDSS 265 Query: 103 SKRCLEWFYEYAGTD--------DVVGPE 123 SK E F E D D++GPE Sbjct: 266 SKESQEEFLENPWKDRTKAEEPSDLIGPE 294 >gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F subunit [Homo sapiens] Length = 1977 Score = 31.6 bits (70), Expect = 0.86 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%) Query: 33 NLTEDIGQDDHQTGSLRSCSSSDCFNKVMPPRKKRR 68 ++TE G +D + G+L SC+ C NK+M R RR Sbjct: 477 SMTETQGDEDEEEGALASCTR--CLNKIMKTRVCRR 510 >gi|7427519 minichromosome maintenance complex component 6 [Homo sapiens] Length = 821 Score = 31.2 bits (69), Expect = 1.1 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%) Query: 12 LNSHLSTLANIHKIYHTLNKLNLTEDIGQDDHQTGSLRSCSSSDC-FNKVMPPRKKRRPA 70 +N H + A ++ I N N EDI Q+ SLR S C + ++ ++ Sbjct: 683 INGHADSPAPVNGI----NGYN--EDINQESAPKASLRLGFSEYCRISNLIVLHLRKVEE 736 Query: 71 SGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLE 108 D+ + K+S + Y K + I +EEE + KR +E Sbjct: 737 EEDESALKRSELVNWYLKEIESEIDSEEELINKKRIIE 774 >gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] Length = 2752 Score = 31.2 bits (69), Expect = 1.1 Identities = 19/48 (39%), Positives = 22/48 (45%) Query: 49 RSCSSSDCFNKVMPPRKKRRPASGDDLSAKKSRHDSMYRKYDSTRIKT 96 RS SSS PPR +R P+ A+KSR R S R KT Sbjct: 1708 RSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKT 1755 >gi|117320550 hypothetical protein LOC400566 [Homo sapiens] Length = 433 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/44 (34%), Positives = 23/44 (52%) Query: 39 GQDDHQTGSLRSCSSSDCFNKVMPPRKKRRPASGDDLSAKKSRH 82 G D HQ+ SL+S S F+ ++ P K+R P S + +H Sbjct: 100 GDDKHQSQSLKSQPLSSSFHDILSPCKERGPKPEHRQSKVEKKH 143 >gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens] Length = 558 Score = 29.6 bits (65), Expect = 3.3 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 14/84 (16%) Query: 202 DFAREKDQRSLDINTAKCMLGLLLGKIWP--------------LFPVFHQFLEQSKYKVI 247 D R+ + ++ TAK LL G I P +PV E+ +YK + Sbjct: 402 DRQRDSEVNFKELRTAKMKPELLSGHIPPGHIPKPIVMPDYVAKYPVIQTDDERERYKAV 461 Query: 248 NKDQWCNVLEFSRTINLDLSNYDE 271 +DQ+ E S + L +DE Sbjct: 462 FQDQFSEYKELSAEVQAVLRKFDE 485 >gi|215982794 myosin VA isoform 2 [Homo sapiens] Length = 1828 Score = 29.3 bits (64), Expect = 4.3 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 137 ENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLR 184 EN +M L K+D QN Y L E L + + TEKLR+ L+ L+ Sbjct: 926 ENKIMQ-LQRKVDEQNKDYKCLVEKLTNLEGIYNSETEKLRSDLERLQ 972 >gi|215982791 myosin VA isoform 1 [Homo sapiens] Length = 1855 Score = 29.3 bits (64), Expect = 4.3 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 137 ENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLR 184 EN +M L K+D QN Y L E L + + TEKLR+ L+ L+ Sbjct: 926 ENKIMQ-LQRKVDEQNKDYKCLVEKLTNLEGIYNSETEKLRSDLERLQ 972 >gi|69354859 ADAM metallopeptidase domain 8 precursor [Homo sapiens] Length = 856 Score = 28.5 bits (62), Expect = 7.3 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 15/108 (13%) Query: 16 LSTLANIHKIYHTLNKLNLTEDIG-----------QDDHQTGSLRSCS-SSDCFNKVMPP 63 LST A + + + L+L E + Q +H + +C S D ++ P Sbjct: 121 LSTCAGLRGFFQVGSDLHLIEPLDEGGEGGRHAVYQAEHLLQTAGTCGVSDDSLGSLLGP 180 Query: 64 RKKR--RPASGDDLSAKKSRHDSMYRKYDSTRIK-TEEEAFSSKRCLE 108 R RP GD L ++++R+ +Y D+ + EA R LE Sbjct: 181 RTAAVFRPRPGDSLPSRETRYVELYVVVDNAEFQMLGSEAAVRHRVLE 228 >gi|19924099 synapsin I isoform Ia [Homo sapiens] Length = 705 Score = 28.5 bits (62), Expect = 7.3 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Query: 174 EKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDI 214 E LRN + +RS D F LI ++AF AR D RSL I Sbjct: 166 EVLRNGVKVVRSLKPD---FVLIRQHAFSMARNGDYRSLVI 203 >gi|19924097 synapsin I isoform Ib [Homo sapiens] Length = 669 Score = 28.5 bits (62), Expect = 7.3 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Query: 174 EKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDI 214 E LRN + +RS D F LI ++AF AR D RSL I Sbjct: 166 EVLRNGVKVVRSLKPD---FVLIRQHAFSMARNGDYRSLVI 203 >gi|110630018 eukaryotic translation initiation factor 4 gamma, 2 isoform 2 [Homo sapiens] Length = 869 Score = 28.5 bits (62), Expect = 7.3 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Query: 59 KVMPPRKKRRP--ASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLE 108 K +P R RR ++ ++ + +K RHD+++RK K E F K CLE Sbjct: 49 KWIPARSTRRDDNSAANNSANEKERHDAIFRKVRGILNKLTPEKF-DKLCLE 99 >gi|4503539 eukaryotic translation initiation factor 4 gamma, 2 isoform 1 [Homo sapiens] Length = 907 Score = 28.5 bits (62), Expect = 7.3 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Query: 59 KVMPPRKKRRP--ASGDDLSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLE 108 K +P R RR ++ ++ + +K RHD+++RK K E F K CLE Sbjct: 49 KWIPARSTRRDDNSAANNSANEKERHDAIFRKVRGILNKLTPEKF-DKLCLE 99 >gi|32481206 lactase-phlorizin hydrolase preproprotein [Homo sapiens] Length = 1927 Score = 28.1 bits (61), Expect = 9.5 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 168 LQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCML-GLLLG 226 + CD+ +L L+ LR+ + F + + F R S ++ ++ GL+ Sbjct: 951 IACDSYHQLDADLNMLRALKVKAYRFSISWSRIFPTGRNSSINSHGVDYYNRLINGLVAS 1010 Query: 227 KIWPLFPVFHQFLEQS 242 I+P+ +FH L Q+ Sbjct: 1011 NIFPMVTLFHWDLPQA 1026 >gi|189571679 NudC domain containing 1 isoform 2 [Homo sapiens] Length = 554 Score = 28.1 bits (61), Expect = 9.5 Identities = 13/44 (29%), Positives = 23/44 (52%) Query: 236 HQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLL 279 HQFLE Y I+ + +++ S ++ + L +E WP L+ Sbjct: 289 HQFLEGKLYSSIDHESSTWIIKESNSLEISLIKKNEGLTWPELV 332 >gi|189571677 NudC domain containing 1 isoform 1 [Homo sapiens] Length = 583 Score = 28.1 bits (61), Expect = 9.5 Identities = 13/44 (29%), Positives = 23/44 (52%) Query: 236 HQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLL 279 HQFLE Y I+ + +++ S ++ + L +E WP L+ Sbjct: 318 HQFLEGKLYSSIDHESSTWIIKESNSLEISLIKKNEGLTWPELV 361 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.134 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,846,905 Number of Sequences: 37866 Number of extensions: 458952 Number of successful extensions: 1463 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 1446 Number of HSP's gapped (non-prelim): 25 length of query: 292 length of database: 18,247,518 effective HSP length: 101 effective length of query: 191 effective length of database: 14,423,052 effective search space: 2754802932 effective search space used: 2754802932 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.