Search of human proteins with 94421024

Search of human proteins with 94421024

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|94421024 CD83 antigen isoform b [Homo sapiens]
         (204 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|94421024 CD83 antigen isoform b [Homo sapiens]                     421   e-118
gi|4757946 CD83 antigen isoform a [Homo sapiens]                      417   e-117
gi|53829379 plasminogen activator, urokinase receptor isoform 2 ...    34   0.075
gi|4505865 plasminogen activator, urokinase receptor isoform 1 p...    34   0.075
gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42...    34   0.075
gi|75709184 contactin 3 [Homo sapiens]                                 34   0.098
gi|18426911 signal-regulatory protein alpha precursor [Homo sapi...    32   0.29 
gi|91105767 signal-regulatory protein alpha precursor [Homo sapi...    32   0.29 
gi|91105764 signal-regulatory protein alpha precursor [Homo sapi...    32   0.29 
gi|222144244 fibroblast growth factor receptor 2 isoform 9 precu...    32   0.37 
gi|222144231 fibroblast growth factor receptor 2 isoform 3 precu...    32   0.37 
gi|221316638 fibroblast growth factor receptor 2 isoform 2 precu...    32   0.37 
gi|10864029 junctional adhesion molecule 2 precursor [Homo sapiens]    32   0.37 
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho...    32   0.49 
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa...    31   0.83 
gi|193083163 roundabout, axon guidance receptor, homolog 2 isofo...    31   0.83 
gi|61888896 roundabout, axon guidance receptor, homolog 2 isofor...    31   0.83 
gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens]       31   0.83 
gi|37221189 butyrophilin, subfamily 3, member A1 isoform b [Homo...    30   1.1  
gi|222418660 butyrophilin, subfamily 3, member A1 isoform d [Hom...    30   1.1  
gi|222418658 butyrophilin, subfamily 3, member A1 isoform c [Hom...    30   1.1  
gi|37595558 butyrophilin, subfamily 3, member A1 isoform a [Homo...    30   1.1  
gi|66346706 neuronal growth regulator 1 [Homo sapiens]                 30   1.4  
gi|114199473 vacuolar protein sorting 41 isoform 2 [Homo sapiens]      30   1.4  
gi|114199475 vacuolar protein sorting 41 isoform 1 [Homo sapiens]      30   1.4  
gi|163659903 insulin-like growth factor 1 isoform 3 preproprotei...    30   1.9  
gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens]             30   1.9  
gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens]             30   1.9  
gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4 pr...    30   1.9  
gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4 p...    30   1.9  

>gi|94421024 CD83 antigen isoform b [Homo sapiens]
          Length = 204

 Score =  421 bits (1083), Expect = e-118
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MSRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERM 60
           MSRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERM
Sbjct: 1   MSRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERM 60

Query: 61  ETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG 120
           ETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG
Sbjct: 61  ETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG 120

Query: 121 KVILRVTGCPAQRKEETFKKYRAEIVLLLALVIFYLTLIIFTCFARLQSIFPDFSKAGME 180
           KVILRVTGCPAQRKEETFKKYRAEIVLLLALVIFYLTLIIFTCFARLQSIFPDFSKAGME
Sbjct: 121 KVILRVTGCPAQRKEETFKKYRAEIVLLLALVIFYLTLIIFTCFARLQSIFPDFSKAGME 180

Query: 181 RAFLPVTSPNKHLGLVTPHKTELV 204
           RAFLPVTSPNKHLGLVTPHKTELV
Sbjct: 181 RAFLPVTSPNKHLGLVTPHKTELV 204


>gi|4757946 CD83 antigen isoform a [Homo sapiens]
          Length = 205

 Score =  417 bits (1071), Expect = e-117
 Identities = 204/205 (99%), Positives = 204/205 (99%), Gaps = 1/205 (0%)

Query: 1   MSRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERM 60
           MSRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERM
Sbjct: 1   MSRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERM 60

Query: 61  ETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG 120
           ETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG
Sbjct: 61  ETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG 120

Query: 121 KVILRVTGCPAQRKEETFKKYRAEIVLLLALVIFYLTLIIFTC-FARLQSIFPDFSKAGM 179
           KVILRVTGCPAQRKEETFKKYRAEIVLLLALVIFYLTLIIFTC FARLQSIFPDFSKAGM
Sbjct: 121 KVILRVTGCPAQRKEETFKKYRAEIVLLLALVIFYLTLIIFTCKFARLQSIFPDFSKAGM 180

Query: 180 ERAFLPVTSPNKHLGLVTPHKTELV 204
           ERAFLPVTSPNKHLGLVTPHKTELV
Sbjct: 181 ERAFLPVTSPNKHLGLVTPHKTELV 205


>gi|53829379 plasminogen activator, urokinase receptor isoform 2
           precursor [Homo sapiens]
          Length = 281

 Score = 34.3 bits (77), Expect = 0.075
 Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 2   SRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERME 61
           SR   L  +SC  S      ++         L C +P +  +     W++  EG E R  
Sbjct: 110 SRSRYLECISCGSS------DMSCERGRHQSLQCRSPEEQCLDVVTHWIQ--EGEEGR-- 159

Query: 62  TPQED-HLRGQHYHQ--KGQNGSFDAPNERPYSLKIRNTTSCNSG 103
            P++D HLRG  Y     G NG  +  N+  + LK  NTT CN G
Sbjct: 160 -PKDDRHLRGCGYLPGCPGSNGFHN--NDTFHFLKCCNTTKCNEG 201


>gi|4505865 plasminogen activator, urokinase receptor isoform 1
           precursor [Homo sapiens]
          Length = 335

 Score = 34.3 bits (77), Expect = 0.075
 Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 2   SRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERME 61
           SR   L  +SC  S      ++         L C +P +  +     W++  EG E R  
Sbjct: 110 SRSRYLECISCGSS------DMSCERGRHQSLQCRSPEEQCLDVVTHWIQ--EGEEGR-- 159

Query: 62  TPQED-HLRGQHYHQ--KGQNGSFDAPNERPYSLKIRNTTSCNSG 103
            P++D HLRG  Y     G NG  +  N+  + LK  NTT CN G
Sbjct: 160 -PKDDRHLRGCGYLPGCPGSNGFHN--NDTFHFLKCCNTTKCNEG 201


>gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42
           precursor [Homo sapiens]
          Length = 2012

 Score = 34.3 bits (77), Expect = 0.075
 Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 16/144 (11%)

Query: 9   LLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHL 68
           L S  Y +  +  EV  A +    +PC A   P  P T+ W   L  GEE  + P     
Sbjct: 20  LHSSLYFVNASLQEVVFASTTGTLVPCPAAGIP--PVTLRWY--LATGEEIYDVPGI--- 72

Query: 69  RGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILRVTG 128
             +H H  G    F  P   P S     +T  +  TY CT ++P G+       I  V  
Sbjct: 73  --RHVHPNGTLQIFPFP---PSSF----STLIHDNTYYCTAENPSGKIRSQDVHIKAVLR 123

Query: 129 CPAQRKEETFKKYRAEIVLLLALV 152
            P   + E  K  R  + +   ++
Sbjct: 124 EPYTVRVEDQKTMRGNVAVFKCII 147


>gi|75709184 contactin 3 [Homo sapiens]
          Length = 1028

 Score = 33.9 bits (76), Expect = 0.098
 Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 20/116 (17%)

Query: 15  SLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYH 74
           +LAP+  +V V   E V LPC    DP +    +W     G     +        G H+ 
Sbjct: 503 TLAPSNMDVSVG--ESVILPCQVQHDPLLDIIFTW--YFNGALADFKKD------GSHFE 552

Query: 75  QKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILRVTGCP 130
           + G + S D        L IRN    +SG Y C +Q   G  ++S    L V G P
Sbjct: 553 KVGGSSSGD--------LMIRNIQLKHSGKYVCMVQ--TGVDSVSSAADLIVRGSP 598



 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 92  LKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVIL----RVTGCPA 131
           LKI N T  ++GTY C  ++  G+ N +  +++    R+T  P+
Sbjct: 464 LKIANVTKADAGTYTCMAENQFGKANGTTHLVVTEPTRITLAPS 507


>gi|18426911 signal-regulatory protein alpha precursor [Homo
           sapiens]
          Length = 504

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 17/111 (15%)

Query: 7   LLLLSCAYSLAPATPEVKV---------ACSEDVDLPCTAPWDPQVPY-TVSWVKLLEGG 56
           LL  SCA+S      E++V         A  E   L CTA     +P   + W +    G
Sbjct: 18  LLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTAT--SLIPVGPIQWFRGAGPG 75

Query: 57  EERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRC 107
            E +   +E H     + +          N   +S++I N T  ++GTY C
Sbjct: 76  RELIYNQKEGH-----FPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYC 121


>gi|91105767 signal-regulatory protein alpha precursor [Homo
           sapiens]
          Length = 504

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 17/111 (15%)

Query: 7   LLLLSCAYSLAPATPEVKV---------ACSEDVDLPCTAPWDPQVPY-TVSWVKLLEGG 56
           LL  SCA+S      E++V         A  E   L CTA     +P   + W +    G
Sbjct: 18  LLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTAT--SLIPVGPIQWFRGAGPG 75

Query: 57  EERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRC 107
            E +   +E H     + +          N   +S++I N T  ++GTY C
Sbjct: 76  RELIYNQKEGH-----FPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYC 121


>gi|91105764 signal-regulatory protein alpha precursor [Homo
           sapiens]
          Length = 504

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 17/111 (15%)

Query: 7   LLLLSCAYSLAPATPEVKV---------ACSEDVDLPCTAPWDPQVPY-TVSWVKLLEGG 56
           LL  SCA+S      E++V         A  E   L CTA     +P   + W +    G
Sbjct: 18  LLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTAT--SLIPVGPIQWFRGAGPG 75

Query: 57  EERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRC 107
            E +   +E H     + +          N   +S++I N T  ++GTY C
Sbjct: 76  RELIYNQKEGH-----FPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYC 121


>gi|222144244 fibroblast growth factor receptor 2 isoform 9
           precursor [Homo sapiens]
          Length = 680

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 13/149 (8%)

Query: 30  DVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERP 89
           DV+  C    D Q P+ + W+K +E    +          G  Y +  ++   ++ N   
Sbjct: 184 DVEFVCKVYSDAQ-PH-IQWIKHVEKNGSKYGPD------GLPYLKVLKHSGINSSNAEV 235

Query: 90  YSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG-KVILRVTGCPAQRKEETFKKYRAEIVLL 148
             L + N T  ++G Y C + +  GQ N S    +L     P + KE T      EI + 
Sbjct: 236 --LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKEITASPDYLEIAIY 293

Query: 149 LALVIFYLTLIIFTCFARLQSIF--PDFS 175
              V     +++     R+++    PDFS
Sbjct: 294 CIGVFLIACMVVTVILCRMKNTTKKPDFS 322


>gi|222144231 fibroblast growth factor receptor 2 isoform 3
           precursor [Homo sapiens]
          Length = 769

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 13/149 (8%)

Query: 30  DVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERP 89
           DV+  C    D Q P+ + W+K +E    +          G  Y +  ++   ++ N   
Sbjct: 273 DVEFVCKVYSDAQ-PH-IQWIKHVEKNGSKYGPD------GLPYLKVLKHSGINSSNAEV 324

Query: 90  YSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG-KVILRVTGCPAQRKEETFKKYRAEIVLL 148
             L + N T  ++G Y C + +  GQ N S    +L     P + KE T      EI + 
Sbjct: 325 --LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKEITASPDYLEIAIY 382

Query: 149 LALVIFYLTLIIFTCFARLQSIF--PDFS 175
              V     +++     R+++    PDFS
Sbjct: 383 CIGVFLIACMVVTVILCRMKNTTKKPDFS 411


>gi|221316638 fibroblast growth factor receptor 2 isoform 2
           precursor [Homo sapiens]
          Length = 822

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 13/149 (8%)

Query: 30  DVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERP 89
           DV+  C    D Q P+ + W+K +E    +          G  Y +  ++   ++ N   
Sbjct: 273 DVEFVCKVYSDAQ-PH-IQWIKHVEKNGSKYGPD------GLPYLKVLKHSGINSSNAEV 324

Query: 90  YSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG-KVILRVTGCPAQRKEETFKKYRAEIVLL 148
             L + N T  ++G Y C + +  GQ N S    +L     P + KE T      EI + 
Sbjct: 325 --LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKEITASPDYLEIAIY 382

Query: 149 LALVIFYLTLIIFTCFARLQSIF--PDFS 175
              V     +++     R+++    PDFS
Sbjct: 383 CIGVFLIACMVVTVILCRMKNTTKKPDFS 411


>gi|10864029 junctional adhesion molecule 2 precursor [Homo sapiens]
          Length = 298

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 73  YHQKGQNGSFDAPNER-PYSLKIRNTTSCNSGTYRCTLQDP--DGQRNLSGKVILRVTGC 129
           Y+Q+   G F    E   ++++I+N T  ++G YRC +  P   GQ      V L V   
Sbjct: 74  YYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVA 133

Query: 130 PA 131
           PA
Sbjct: 134 PA 135


>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
           sapiens]
          Length = 365

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 92  LKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILRVTGCPAQRKEETFKKYRAEIVLLLAL 151
           + ++N +S  SGTY CT+++  G    S + +LR+   P   K        A I  LLAL
Sbjct: 197 ISVKNASSEYSGTYSCTVRNRVG----SDQCLLRLNVVPPSNKAGLIA--GAIIGTLLAL 250

Query: 152 VIFYLTLIIFTC 163
            +  + LIIF C
Sbjct: 251 AL--IGLIIFCC 260


>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
           sapiens]
          Length = 215

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 85  PNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILRV-TGCPAQRKEETFKKYRA 143
           P++   S+ +RN    + G Y C + +P  +    GK+ L+V    P +R         A
Sbjct: 105 PSKYDVSVMLRNVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGA 164

Query: 144 EIVLLLALVIFYLTLIIFTCFAR 166
            +   LA+VI  L L++  C  R
Sbjct: 165 SVGGFLAVVI--LVLMVVKCVRR 185


>gi|193083163 roundabout, axon guidance receptor, homolog 2 isoform
           ROBO2a [Homo sapiens]
          Length = 1394

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 25/97 (25%)

Query: 29  EDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNER 88
           E V+  C    DPQ   TV W K      +  + P+               G +D  ++ 
Sbjct: 256 EAVEFRCQVQGDPQP--TVRWKK------DDADLPR---------------GRYDIKDD- 291

Query: 89  PYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILR 125
            Y+L+I+ T S + GTY C  ++  G+   S  + +R
Sbjct: 292 -YTLRIKKTMSTDEGTYMCIAENRVGKMEASATLTVR 327


>gi|61888896 roundabout, axon guidance receptor, homolog 2 isoform
           ROBO2b [Homo sapiens]
          Length = 1378

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 25/97 (25%)

Query: 29  EDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNER 88
           E V+  C    DPQ   TV W K      +  + P+               G +D  ++ 
Sbjct: 240 EAVEFRCQVQGDPQP--TVRWKK------DDADLPR---------------GRYDIKDD- 275

Query: 89  PYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILR 125
            Y+L+I+ T S + GTY C  ++  G+   S  + +R
Sbjct: 276 -YTLRIKKTMSTDEGTYMCIAENRVGKMEASATLTVR 311


>gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens]
          Length = 2623

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 19/103 (18%)

Query: 20   TPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQN 79
            T E+ V     V+L C A   P    TV+W+                 L  Q    +   
Sbjct: 1752 TKEITVHSGSTVELKCRAEGRPSP--TVTWI-----------------LANQTVVSESSQ 1792

Query: 80   GSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKV 122
            GS  A      +L + N +  + G Y+C   +P GQ +L  K+
Sbjct: 1793 GSRQAVVTVDGTLVLHNLSIYDRGFYKCVASNPGGQDSLLVKI 1835


>gi|37221189 butyrophilin, subfamily 3, member A1 isoform b [Homo
           sapiens]
          Length = 352

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 17/119 (14%)

Query: 5   LQLLLL-SCAYSLAPATPEVKVACSEDVDLPCTA-PWDPQVPYTVSWVK--------LLE 54
           LQLL+  S  +S+   +  +     ED DLPC   P        + WV         +  
Sbjct: 21  LQLLMPHSAQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYA 80

Query: 55  GGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPD 113
            G+E +E  Q    RG+    +      D       +L+I N T+ +SG Y C  QD D
Sbjct: 81  DGKE-VEDRQSAPYRGRTSILR------DGITAGKAALRIHNVTASDSGKYLCYFQDGD 132


>gi|222418660 butyrophilin, subfamily 3, member A1 isoform d [Homo
           sapiens]
          Length = 378

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 17/119 (14%)

Query: 5   LQLLLL-SCAYSLAPATPEVKVACSEDVDLPCTA-PWDPQVPYTVSWVK--------LLE 54
           LQLL+  S  +S+   +  +     ED DLPC   P        + WV         +  
Sbjct: 21  LQLLMPHSAQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYA 80

Query: 55  GGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPD 113
            G+E +E  Q    RG+    +      D       +L+I N T+ +SG Y C  QD D
Sbjct: 81  DGKE-VEDRQSAPYRGRTSILR------DGITAGKAALRIHNVTASDSGKYLCYFQDGD 132


>gi|222418658 butyrophilin, subfamily 3, member A1 isoform c [Homo
           sapiens]
          Length = 461

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 17/119 (14%)

Query: 5   LQLLLL-SCAYSLAPATPEVKVACSEDVDLPCTA-PWDPQVPYTVSWVK--------LLE 54
           LQLL+  S  +S+   +  +     ED DLPC   P        + WV         +  
Sbjct: 21  LQLLMPHSAQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYA 80

Query: 55  GGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPD 113
            G+E +E  Q    RG+    +      D       +L+I N T+ +SG Y C  QD D
Sbjct: 81  DGKE-VEDRQSAPYRGRTSILR------DGITAGKAALRIHNVTASDSGKYLCYFQDGD 132


>gi|37595558 butyrophilin, subfamily 3, member A1 isoform a [Homo
           sapiens]
          Length = 513

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 17/119 (14%)

Query: 5   LQLLLL-SCAYSLAPATPEVKVACSEDVDLPCTA-PWDPQVPYTVSWVK--------LLE 54
           LQLL+  S  +S+   +  +     ED DLPC   P        + WV         +  
Sbjct: 21  LQLLMPHSAQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYA 80

Query: 55  GGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPD 113
            G+E +E  Q    RG+    +      D       +L+I N T+ +SG Y C  QD D
Sbjct: 81  DGKE-VEDRQSAPYRGRTSILR------DGITAGKAALRIHNVTASDSGKYLCYFQDGD 132


>gi|66346706 neuronal growth regulator 1 [Homo sapiens]
          Length = 354

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 81  SFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILRV 126
           S    N+R YSL+I+N    + G Y C++Q     R +   + ++V
Sbjct: 92  SISTLNKRDYSLQIQNVDVTDDGPYTCSVQTQHTPRTMQVHLTVQV 137


>gi|114199473 vacuolar protein sorting 41 isoform 2 [Homo sapiens]
          Length = 829

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 13/64 (20%)

Query: 47  VSWVKLLEGGEERMETP--------QEDHLRGQHYHQK--GQNGSFDAPNERPYSLKIRN 96
           +S  K++E  E+R E          + DH +GQ YH+K       +D PN  P+   +R+
Sbjct: 553 ISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEYDRPNLLPF---LRD 609

Query: 97  TTSC 100
           +T C
Sbjct: 610 STHC 613


>gi|114199475 vacuolar protein sorting 41 isoform 1 [Homo sapiens]
          Length = 854

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 13/64 (20%)

Query: 47  VSWVKLLEGGEERMETP--------QEDHLRGQHYHQK--GQNGSFDAPNERPYSLKIRN 96
           +S  K++E  E+R E          + DH +GQ YH+K       +D PN  P+   +R+
Sbjct: 578 ISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEYDRPNLLPF---LRD 634

Query: 97  TTSC 100
           +T C
Sbjct: 635 STHC 638


>gi|163659903 insulin-like growth factor 1 isoform 3 preproprotein
           [Homo sapiens]
          Length = 195

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 5   LQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYT---------VSWVKLLEG 55
           L+ L + CA  L PA     V      D+P T  + P  P T           W K   G
Sbjct: 102 LRRLEMYCA-PLKPAKSARSVRAQRHTDMPKTQKYQP--PSTNKNTKSQRRKGWPKTHPG 158

Query: 56  GEERMETPQEDHLRGQHYHQKGQNGSFDA 84
           GE++  T     +RG+   Q+ + GS +A
Sbjct: 159 GEQKEGTEASLQIRGKKKEQRREIGSRNA 187


>gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens]
          Length = 1018

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 23/113 (20%)

Query: 16  LAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWV---KLLEGGEERMETPQEDHLRGQH 72
           LAP   ++ V   E+  + C A +DP +  T  W     +++  +E +           H
Sbjct: 509 LAPINADITVG--ENATMQCAASFDPALDLTFVWSFNGYVIDFNKENI-----------H 555

Query: 73  YHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILR 125
           Y +   N   D+  E    L IRN    ++G Y CT Q      + S  +++R
Sbjct: 556 YQR---NFMLDSNGE----LLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVR 601


>gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens]
          Length = 1007

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 23/113 (20%)

Query: 16  LAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWV---KLLEGGEERMETPQEDHLRGQH 72
           LAP   ++ V   E+  + C A +DP +  T  W     +++  +E +           H
Sbjct: 498 LAPINADITVG--ENATMQCAASFDPALDLTFVWSFNGYVIDFNKENI-----------H 544

Query: 73  YHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILR 125
           Y +   N   D+  E    L IRN    ++G Y CT Q      + S  +++R
Sbjct: 545 YQR---NFMLDSNGE----LLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVR 590


>gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4
           precursor [Homo sapiens]
          Length = 171

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 22/137 (16%)

Query: 5   LQLLLLSCAYS-----LAPATPEVKVACSEDVDLPCT-APWDPQVPYTVSW--------V 50
           L LL +S +Y+     + P  P ++    ++V+LPC  +P        V W        V
Sbjct: 19  LLLLQVSSSYAGQFRVIGPRHP-IRALVGDEVELPCRISPGKNATGMEVGWYRPPFSRVV 77

Query: 51  KLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQ 110
            L   G+++ +  Q    RG+    K      DA  E   +L+IRN    + G + C  +
Sbjct: 78  HLYRNGKDQ-DGDQAPEYRGRTELLK------DAIGEGKVTLRIRNVRFSDEGGFTCFFR 130

Query: 111 DPDGQRNLSGKVILRVT 127
           D   Q   + ++ + V+
Sbjct: 131 DHSYQEEAAMELKVEVS 147


>gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4
           precursor [Homo sapiens]
          Length = 171

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 22/137 (16%)

Query: 5   LQLLLLSCAYS-----LAPATPEVKVACSEDVDLPCT-APWDPQVPYTVSW--------V 50
           L LL +S +Y+     + P  P ++    ++V+LPC  +P        V W        V
Sbjct: 19  LLLLQVSSSYAGQFRVIGPRHP-IRALVGDEVELPCRISPGKNATGMEVGWYRPPFSRVV 77

Query: 51  KLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQ 110
            L   G+++ +  Q    RG+    K      DA  E   +L+IRN    + G + C  +
Sbjct: 78  HLYRNGKDQ-DGDQAPEYRGRTELLK------DAIGEGKVTLRIRNVRFSDEGGFTCFFR 130

Query: 111 DPDGQRNLSGKVILRVT 127
           D   Q   + ++ + V+
Sbjct: 131 DHSYQEEAAMELKVEVS 147


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,683,483
Number of Sequences: 37866
Number of extensions: 402435
Number of successful extensions: 1368
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 215
length of query: 204
length of database: 18,247,518
effective HSP length: 97
effective length of query: 107
effective length of database: 14,574,516
effective search space: 1559473212
effective search space used: 1559473212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.