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Search of human proteins with 90903240
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|90903240 glutathione peroxidase 4 isoform C precursor [Homo
sapiens]
(234 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|90903240 glutathione peroxidase 4 isoform C precursor [Homo s... 499 e-141
gi|75709200 glutathione peroxidase 4 isoform A precursor [Homo s... 362 e-100
gi|90903238 glutathione peroxidase 4 isoform B precursor [Homo s... 300 7e-82
gi|15618997 glutathione peroxidase 7 [Homo sapiens] 116 2e-26
gi|192455698 glutathione peroxidase 8 [Homo sapiens] 108 3e-24
gi|41406084 glutathione peroxidase 1 isoform 1 [Homo sapiens] 100 1e-21
gi|32967607 glutathione peroxidase 2 [Homo sapiens] 92 4e-19
gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens] 82 4e-16
gi|4557629 glutathione peroxidase 5 isoform 1 precursor [Homo sa... 75 6e-14
gi|33186887 glutathione peroxidase 6 [Homo sapiens] 75 6e-14
gi|41406082 glutathione peroxidase 1 isoform 2 [Homo sapiens] 61 9e-10
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 42 5e-04
gi|24307919 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Ho... 40 0.002
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 39 0.005
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 38 0.009
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 38 0.009
gi|239752057 PREDICTED: hypothetical protein XP_002348077 [Homo ... 37 0.015
gi|239746542 PREDICTED: hypothetical protein XP_002343773 [Homo ... 37 0.015
gi|239509017 PREDICTED: hypothetical protein, partial [Homo sapi... 37 0.019
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 37 0.019
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 36 0.025
gi|239756568 PREDICTED: similar to BCL2-associated transcription... 35 0.042
gi|239754641 PREDICTED: hypothetical protein [Homo sapiens] 35 0.042
gi|239749183 PREDICTED: hypothetical protein XP_002346949 [Homo ... 35 0.042
gi|239743263 PREDICTED: hypothetical protein XP_002342813 [Homo ... 35 0.042
gi|239508944 PREDICTED: hypothetical protein [Homo sapiens] 35 0.042
gi|57242766 hypothetical protein LOC168455 [Homo sapiens] 35 0.055
gi|68989267 protamine 2 [Homo sapiens] 35 0.072
gi|239756477 PREDICTED: similar to predicted protein [Homo sapiens] 35 0.072
gi|169218320 PREDICTED: similar to BCL2-associated transcription... 35 0.072
>gi|90903240 glutathione peroxidase 4 isoform C precursor [Homo
sapiens]
Length = 234
Score = 499 bits (1284), Expect = e-141
Identities = 234/234 (100%), Positives = 234/234 (100%)
Query: 1 MGRAGAGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHECP 60
MGRAGAGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHECP
Sbjct: 1 MGRAGAGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHECP 60
Query: 61 KSQDPCASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQL 120
KSQDPCASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQ GKTEVNYTQL
Sbjct: 61 KSQDPCASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQL 120
Query: 121 VDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPL 180
VDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPL
Sbjct: 121 VDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPL 180
Query: 181 WKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 234
WKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF
Sbjct: 181 WKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 234
>gi|75709200 glutathione peroxidase 4 isoform A precursor [Homo
sapiens]
Length = 197
Score = 362 bits (928), Expect = e-100
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 66 CASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHA 125
CASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQ GKTEVNYTQLVDLHA
Sbjct: 29 CASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHA 88
Query: 126 RYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMK 185
RYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMK
Sbjct: 89 RYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMK 148
Query: 186 IQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 234
IQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF
Sbjct: 149 IQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 197
>gi|90903238 glutathione peroxidase 4 isoform B precursor [Homo
sapiens]
Length = 227
Score = 300 bits (768), Expect = 7e-82
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 66 CASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHA 125
CASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQ GKTEVNYTQLVDLHA
Sbjct: 29 CASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHA 88
Query: 126 RYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMK 185
RYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMK
Sbjct: 89 RYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMK 148
Query: 186 IQPKGKGILGNAIKWNFTKF 205
IQPKGKGILGNAIKWNFTKF
Sbjct: 149 IQPKGKGILGNAIKWNFTKF 168
>gi|15618997 glutathione peroxidase 7 [Homo sapiens]
Length = 187
Score = 116 bits (290), Expect = 2e-26
Identities = 65/145 (44%), Positives = 88/145 (60%), Gaps = 7/145 (4%)
Query: 76 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 135
+ ++F A +I G +V+L+KYRG V +V NVAS+ G T+ +Y L L +L
Sbjct: 23 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 82
Query: 136 AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 194
AFPCNQFG+QEP SN+EI+ FA Y+V F MFSKI V G AHP +K++ Q GK
Sbjct: 83 AFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYL-AQTSGK--- 138
Query: 195 GNAIKWNFTKFLIDKNGCVVKRYGP 219
WNF K+L+ +G VV + P
Sbjct: 139 --EPTWNFWKYLVAPDGKVVGAWDP 161
>gi|192455698 glutathione peroxidase 8 [Homo sapiens]
Length = 209
Score = 108 bits (271), Expect = 3e-24
Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 7/155 (4%)
Query: 77 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILA 136
S + F KD G V+L+KY+G V +V NVAS T+ NY L +LH + +LA
Sbjct: 46 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 105
Query: 137 FPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 195
FPCNQFG+ EP ++E++ FA Y V F +F KI + G + P ++++ K +
Sbjct: 106 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEP--- 162
Query: 196 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 230
+WNF K+L++ G VVK + P E VI D+
Sbjct: 163 ---RWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDI 194
>gi|41406084 glutathione peroxidase 1 isoform 1 [Homo sapiens]
Length = 203
Score = 100 bits (248), Expect = 1e-21
Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 24/180 (13%)
Query: 75 ARSMHEFSAKDI-DGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLR 133
A+S++ FSA+ + G V+L RG V ++ NVAS G T +YTQ+ +L R GL
Sbjct: 13 AQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLV 72
Query: 134 ILAFPCNQFGKQEPGSNEEIKEF------AAGYNVKFDMFSKICVNGDDAHPLWKWMK-- 185
+L FPCNQFG QE NEEI G+ F +F K VNG AHPL+ +++
Sbjct: 73 VLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREA 132
Query: 186 ------------IQPK---GKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 230
PK + N + WNF KFL+ +G ++RY + + IE D+
Sbjct: 133 LPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDI 192
>gi|32967607 glutathione peroxidase 2 [Homo sapiens]
Length = 190
Score = 92.0 bits (227), Expect = 4e-19
Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 24/179 (13%)
Query: 75 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRI 134
A+S ++ SA +DG V+ + +RG ++ NVAS G T ++TQL +L R+ L +
Sbjct: 5 AKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPR-RLVV 63
Query: 135 LAFPCNQFGKQEPGSNEEIKEF------AAGYNVKFDMFSKICVNGDDAHPLWKWMK--- 185
L FPCNQFG QE NEEI GY F + K VNG + HP++ ++K
Sbjct: 64 LGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKL 123
Query: 186 ---------IQPKGKGILGNAIK-----WNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 230
+ K I+ + ++ WNF KFLI G +RY + IE D+
Sbjct: 124 PYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI 182
>gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens]
Length = 226
Score = 82.0 bits (201), Expect = 4e-16
Identities = 57/161 (35%), Positives = 78/161 (48%), Gaps = 21/161 (13%)
Query: 77 SMHEFSAKDIDGH-MVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 135
+++E+ A IDG + +Y G + NVAS G T Y +L L A GL IL
Sbjct: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVIL 97
Query: 136 AFPCNQFGKQEPGSNEEIKEF------AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQ-P 188
FPCNQFGKQEPG N EI G+ F +F K VNG+ + ++K P
Sbjct: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157
Query: 189 KGKGILGNA------------IKWNFTKFLIDKNGCVVKRY 217
+LG + I+WNF KFL+ +G + R+
Sbjct: 158 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRW 198
>gi|4557629 glutathione peroxidase 5 isoform 1 precursor [Homo
sapiens]
Length = 221
Score = 74.7 bits (182), Expect = 6e-14
Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 91 VNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSN 150
V+ +Y G + NVA+ G T Y +L L GL +L FPCNQFGKQEPG N
Sbjct: 54 VSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDN 112
Query: 151 EEI------KEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQ-PKGKGILG-------- 195
+EI G+ F +F K VNG+ ++ ++K P ILG
Sbjct: 113 KEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWD 172
Query: 196 ----NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 233
+ I+WNF KFL+ +G V R+ ++ D+ Y
Sbjct: 173 PVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAY 214
>gi|33186887 glutathione peroxidase 6 [Homo sapiens]
Length = 221
Score = 74.7 bits (182), Expect = 6e-14
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 77 SMHEFSAKDIDGH-MVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 135
+++E+ A ++G + ++ G + NVA+ G Y +L L G+ +L
Sbjct: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVL 97
Query: 136 AFPCNQFGKQEPGSNEEIKEF------AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQ-P 188
AFPCNQFGKQEPG+N EI +G+ F +F K VNG+ ++ ++K P
Sbjct: 98 AFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP 157
Query: 189 KGKGILGNA------------IKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 233
+LG++ I+WNF KFL+ +G V + ++ D+ Y
Sbjct: 158 PTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEY 214
>gi|41406082 glutathione peroxidase 1 isoform 2 [Homo sapiens]
Length = 98
Score = 60.8 bits (146), Expect = 9e-10
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 75 ARSMHEFSAKDI-DGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLR 133
A+S++ FSA+ + G V+L RG V ++ NVAS G T +YTQ+ +L R GL
Sbjct: 13 AQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLV 72
Query: 134 ILAFPCNQFGKQ 145
+L FPCNQFG Q
Sbjct: 73 VLGFPCNQFGHQ 84
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 42.0 bits (97), Expect = 5e-04
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 8 SPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHECPKSQDPCA 67
S RRR +SR RRR ++PRRR++ + R R RR R R + E E +S+ P
Sbjct: 271 SRSRRRSHSKSRSRRRSKSPRRRRSHS--RERGRRSRSTSKTRDKKKEDKEKKRSKTPPK 328
Query: 68 SRDDWRCARS 77
S R +RS
Sbjct: 329 SYSTARRSRS 338
Score = 33.5 bits (75), Expect = 0.16
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 3 RAGAGSPGRRRQRCQSRGRRRPRAPRRR--KAPACRRRRARRRRKKPCPRS 51
R+ + RRR R +R ++PR+P+R+ ++P+ RR + +++ K RS
Sbjct: 337 RSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERS 387
Score = 32.0 bits (71), Expect = 0.47
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 13 RQRCQSRGRRRPRAPRRRKAPACRRRR----ARRRRKKPCPRSLRPEIHE 58
R R +SR RR P + R R++ + RRR +R RR+ PR R E
Sbjct: 250 RSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRE 299
Score = 31.2 bits (69), Expect = 0.80
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 12 RRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHECPKSQDPCASRDD 71
RR R SR RRR R+ ++P R R+ + P PR + E K +D SRD+
Sbjct: 334 RRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHK---KEKKKDKDKERSRDE 390
>gi|24307919 small nuclear ribonucleoprotein 27kDa (U4/U6.U5)
[Homo sapiens]
Length = 155
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 1 MGRAGAGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHECP 60
MGR+ + SP R R+R +S R R R R R R RR R R RS P H
Sbjct: 1 MGRSRSRSPRRERRRSRSTSRERERRRRERSRSRERDRRRSRSRSPHRRRSRSPRRH--- 57
Query: 61 KSQDPCASR 69
+S P SR
Sbjct: 58 RSTSPSPSR 66
Score = 31.6 bits (70), Expect = 0.61
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 15/94 (15%)
Query: 11 RRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRK--KPCPRSLRPEIHECPKSQDPCAS 68
RRR+R +SR R R R+ R ++P RR R+ RR + P P L+ E K S
Sbjct: 26 RRRERSRSRERDRRRS--RSRSPHRRRSRSPRRHRSTSPSPSRLKERRDEEKKETKETKS 83
Query: 69 RDDWRCARSMHEFSAKDIDG---HMVNLDKYRGF 99
++ + + +D++G + + K GF
Sbjct: 84 KE--------RQITEEDLEGKTEEEIEMMKLMGF 109
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 38.5 bits (88), Expect = 0.005
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 2 GRAGAGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRR---RKKPCPRSLRP-EIH 57
GR+ +GSP ++R +SR + R R ++P R R+R R + + C RS P +
Sbjct: 388 GRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKAR 447
Query: 58 ECPKSQDPCASRDDWR 73
+ +S+ P +RD R
Sbjct: 448 DRSRSRSPNKARDHSR 463
Score = 32.3 bits (72), Expect = 0.36
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 3 RAGAGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHECPKS 62
R + SP + R R QSR R R+ ++P+ + R RRR + P R + +
Sbjct: 533 RRQSRSPNKERDRSQSRSPSEEREHRQSRSPS--KERDRRRWRSPSKERERRQSRSSSEE 590
Query: 63 QDPCASR 69
+D SR
Sbjct: 591 RDHSRSR 597
Score = 32.0 bits (71), Expect = 0.47
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 8 SPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRR---RKKPCPRSLRP-EIHECPKSQ 63
SP + RQ QSR + R RR ++P+ R+R + R +++ +S P E E +S+
Sbjct: 502 SPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSR 561
Query: 64 DPCASRD--DWR 73
P RD WR
Sbjct: 562 SPSKERDRRRWR 573
Score = 31.2 bits (69), Expect = 0.80
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 5 GAGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRR---RKKPCPRSLRP-EIHECP 60
G+ SP + R QS + R R ++P R R+R R + + RS P + +C
Sbjct: 379 GSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCS 438
Query: 61 KSQDPCASRD 70
+S+ P +RD
Sbjct: 439 RSRSPYKARD 448
Score = 27.7 bits (60), Expect = 8.9
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 8 SPGRRRQRCQSRGRRRPRAPRRRKAP----------ACRRRRARRRRKKPCPRSLRPEIH 57
SP + R+R QSR R R ++P A + +A R + P +
Sbjct: 574 SPSKERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQSR 633
Query: 58 ECPKSQDPCAS----RDDWR 73
K DP S DW+
Sbjct: 634 TSSKESDPSQSTVPRSPDWK 653
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 37.7 bits (86), Expect = 0.009
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 12 RRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHECPKSQDPCASRDD 71
RR R SR RRR R+ ++P + R+ + P PRS + + K +D + R +
Sbjct: 488 RRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRE 547
Query: 72 WRCARSMHEFSAKDIDG 88
+ SM + S+ D DG
Sbjct: 548 RERSTSMRK-SSNDRDG 563
Score = 33.1 bits (74), Expect = 0.21
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 8 SPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRK---KPCPRSLRPEIHECPKSQD 64
S + R R +R R R + RR K+P +R ++R RRK + R R + E K ++
Sbjct: 329 SQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKE 388
Query: 65 PCASRD 70
+D
Sbjct: 389 RVKEKD 394
Score = 30.4 bits (67), Expect = 1.4
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 2 GRAGAGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRR---------RARRRRKKPCPRSL 52
G++ GR R +S+ R ++ RRK + R R + RR+ P
Sbjct: 298 GKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKK 357
Query: 53 RPEIHECPKSQDPCASRD 70
R + E KS+ SRD
Sbjct: 358 RSKSRERRKSRSRSHSRD 375
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 37.7 bits (86), Expect = 0.009
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 12 RRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHECPKSQDPCASRDD 71
RR R SR RRR R+ ++P + R+ + P PRS + + K +D + R +
Sbjct: 372 RRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRE 431
Query: 72 WRCARSMHEFSAKDIDG 88
+ SM + S+ D DG
Sbjct: 432 RERSTSMRK-SSNDRDG 447
Score = 33.1 bits (74), Expect = 0.21
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 8 SPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRK---KPCPRSLRPEIHECPKSQD 64
S + R R +R R R + RR K+P +R ++R RRK + R R + E K ++
Sbjct: 213 SQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKE 272
Query: 65 PCASRD 70
+D
Sbjct: 273 RVKEKD 278
Score = 30.4 bits (67), Expect = 1.4
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 2 GRAGAGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRR---------RARRRRKKPCPRSL 52
G++ GR R +S+ R ++ RRK + R R + RR+ P
Sbjct: 182 GKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKK 241
Query: 53 RPEIHECPKSQDPCASRD 70
R + E KS+ SRD
Sbjct: 242 RSKSRERRKSRSRSHSRD 259
>gi|239752057 PREDICTED: hypothetical protein XP_002348077 [Homo
sapiens]
Length = 344
Score = 37.0 bits (84), Expect = 0.015
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 4 AGAGSPGRRRQRCQS--RGRRRPRAPRRRKAPACRRRRARRRRK 45
A AG GR+R R Q GRR P RR A AC R R R++R+
Sbjct: 58 AQAGRVGRQRGRAQHGVHGRRAPLTARREAARACARARRRQQRR 101
>gi|239746542 PREDICTED: hypothetical protein XP_002343773 [Homo
sapiens]
Length = 302
Score = 37.0 bits (84), Expect = 0.015
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 4 AGAGSPGRRRQRCQS--RGRRRPRAPRRRKAPACRRRRARRRRK 45
A AG GR+R R Q GRR P RR A AC R R R++R+
Sbjct: 47 AQAGRVGRQRGRAQHGVHGRRAPLTARREAARACARARRRQQRR 90
>gi|239509017 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 90
Score = 36.6 bits (83), Expect = 0.019
Identities = 22/61 (36%), Positives = 28/61 (45%)
Query: 3 RAGAGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHECPKS 62
R+ + S SR RRR R RRR+ RRRR RR KK + R E E +
Sbjct: 28 RSSSSSSSSSSSSSSSRRRRRRRRRRRRRRRRRRRRRRRREEKKKQKKKKRREEEEAEEE 87
Query: 63 Q 63
+
Sbjct: 88 E 88
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 36.6 bits (83), Expect = 0.019
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 3 RAGAGSPGRRRQRCQSRGRRRPRAPRRRKAPACR---RRRARRRRKKPCPRSLR 53
R + SP R R + R R R +PRRR +P R RRR RR P PR R
Sbjct: 287 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRR 340
Score = 33.1 bits (74), Expect = 0.21
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 3 RAGAGSPGRRRQRCQSRGRR--RPRAP--RRRKAPACRRRRARRRRKKPCPRSLRPEIHE 58
R+ + SP +R++ RGRR P P RRR++P+ RRR P PR P
Sbjct: 527 RSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPP 586
Query: 59 CPKSQDP 65
+S P
Sbjct: 587 RRRSPSP 593
Score = 31.2 bits (69), Expect = 0.80
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 11 RRRQRCQSRGRRRPRAP-----RRRKAPACRRRRARRR---RKKPCPRSLRP 54
R R R +SR R R R+P RRR R RRR R++P PR P
Sbjct: 277 RSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTP 328
Score = 30.4 bits (67), Expect = 1.4
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 21 RRRPRAPRRRKA--PACRRRRARRRRKKPCPRSLRPEIHECPKSQDPCASRDD 71
R R R+PRRRK+ P+ RRR + RR++ S P +S P + +
Sbjct: 166 RERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKE 218
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 3 RAGAGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHECPKS 62
R + SP RR+ R S RR R RK R R R + + P P + E + P+
Sbjct: 166 RERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKE--KTPEL 223
Query: 63 QDP 65
+P
Sbjct: 224 PEP 226
Score = 29.6 bits (65), Expect = 2.3
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 8 SPGRRRQRCQSRGRRRPRA--PRRRKAPACRRRRARRRRKKPCPRSLRPEIHECPKSQD 64
S +R+R +S RR+ R+ PRRR +P RR R R + P R+ P+ ++
Sbjct: 161 SSREKRERSRSPRRRKSRSPSPRRRSSPV-RRERKRSHSRSPRHRTKSRSPSPAPEKKE 218
Score = 28.9 bits (63), Expect = 4.0
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 16/52 (30%)
Query: 11 RRRQRCQSRG---------RRRP----RAPRRRKAPACRRRRAR---RRRKK 46
RRR R +SR RRRP R P RR P R RR+R RRR++
Sbjct: 299 RRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRR 350
Score = 28.9 bits (63), Expect = 4.0
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 9 PGRRRQRCQSRGRRRPRAPRRRKAPACRRRRAR-----RRRKKPCPRSLR 53
P R + GRRR +P R +P+ R+R+ RRR+ P P R
Sbjct: 507 PKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTR 556
Score = 28.5 bits (62), Expect = 5.2
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 6 AGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRAR-RRRKKPCP 49
A P RRR RR P P RR++P+ RR +RR P P
Sbjct: 564 APPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSP 608
Score = 28.1 bits (61), Expect = 6.8
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 7 GSPGRRRQRCQSRGRRRPRAPRRRK---APACRRRRA-----RRRRKKPCP 49
G GRRR+ SR +PR+R+ +P RRRR+ RRR+ P P
Sbjct: 515 GEVGRRRRHSPSRSASP--SPRKRQKETSPRGRRRRSPSPPPTRRRRSPSP 563
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 36.2 bits (82), Expect = 0.025
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 2 GRAG--AGSPGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHEC 59
GR G AG GRRR RRR R R R + + RRR RRR + PR +
Sbjct: 374 GRGGRAAGGAGRRR-------RRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRA 426
Query: 60 PKSQDPCASR 69
S D + R
Sbjct: 427 RSSSDSGSGR 436
Score = 29.3 bits (64), Expect = 3.0
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 12 RRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRS--LRPEIHECPKSQDPCASR 69
RR R S RR+ R R ++ C+R+ + +K+P S R H S P S
Sbjct: 210 RRDRSDSGSRRKRR--HRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLS- 266
Query: 70 DDWRCARSMHEFSAKDID 87
+ +RS S K D
Sbjct: 267 SHYSDSRSPSRLSPKHRD 284
>gi|239756568 PREDICTED: similar to BCL2-associated transcription
factor 1 [Homo sapiens]
Length = 869
Score = 35.4 bits (80), Expect = 0.042
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 11 RRRQRCQSRGRRRPRAPRRRKAPACRRRRARRR--RKKPCPRSLRPEIHECPKSQDPCAS 68
RR R RGR R R+P+RR + R R RR R PRS P S+ P +
Sbjct: 97 RRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSR-SSSPYSKSPVSK 155
Query: 69 RDDWRCARSMHEFSAKDIDGHM 90
R R E K +G +
Sbjct: 156 R------RGSQEKQTKKAEGEL 171
Score = 31.2 bits (69), Expect = 0.80
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 2 GRAGAGSPGRRR---QRCQSRGRRRPRAPRR------------RKAPACRRRRARRRRKK 46
GR+ + SP RR QR +SR RR R+ R K+P +RR ++ ++ K
Sbjct: 106 GRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKRRGSQEKQTK 165
Query: 47 PCPRSLRPEIHECPKSQDPCASRDDWRCARSMHEFS 82
L+ E KSQ+ + + S+ EF+
Sbjct: 166 KAEGELQEESPLKSKSQEEPKDTFEHDSSESIDEFN 201
>gi|239754641 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 35.4 bits (80), Expect = 0.042
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Query: 11 RRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIH---ECPKSQDPC 66
R R RC + G RR C RR RR R++ CP+SL+P CP+ C
Sbjct: 42 RPRPRCSAEGWRR-----------CWRRSPRRSRRRRCPQSLQPPPSLRPRCPRRPGQC 89
>gi|239749183 PREDICTED: hypothetical protein XP_002346949 [Homo
sapiens]
Length = 229
Score = 35.4 bits (80), Expect = 0.042
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Query: 11 RRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIH---ECPKSQDPC 66
R R RC + G RR C RR RR R++ CP+SL+P CP+ C
Sbjct: 42 RPRPRCSAEGWRR-----------CWRRSPRRSRRRRCPQSLQPPPSLRPRCPRRPGQC 89
>gi|239743263 PREDICTED: hypothetical protein XP_002342813 [Homo
sapiens]
Length = 229
Score = 35.4 bits (80), Expect = 0.042
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Query: 11 RRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIH---ECPKSQDPC 66
R R RC + G RR C RR RR R++ CP+SL+P CP+ C
Sbjct: 42 RPRPRCSAEGWRR-----------CWRRSPRRSRRRRCPQSLQPPPSLRPRCPRRPGQC 89
>gi|239508944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 35.4 bits (80), Expect = 0.042
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Query: 11 RRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIH---ECPKSQDPC 66
R R RC + G RR C RR RR R++ CP+SL+P CP+ C
Sbjct: 42 RPRPRCSAEGWRR-----------CWRRSPRRSRRRRCPQSLQPPPSLRPRCPRRPGQC 89
>gi|57242766 hypothetical protein LOC168455 [Homo sapiens]
Length = 235
Score = 35.0 bits (79), Expect = 0.055
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 9 PGRRRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCPRSLRPEIHECPK---SQDP 65
PG R Q+R R PRA RR+ R ARRR+ +P P P CP + P
Sbjct: 112 PGPPTARGQAR-RPVPRAAARRRRRGARAAAARRRKPRPPPPPPPPPEESCPAKPVAPGP 170
Query: 66 C----ASRDDWRCA 75
C + WR A
Sbjct: 171 CFGGRTLEEIWRAA 184
>gi|68989267 protamine 2 [Homo sapiens]
Length = 102
Score = 34.7 bits (78), Expect = 0.072
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 7 GSPGRRRQRCQSRG-----RRRPRAPRRRKAPACRRRRARRR----RKKPCPR 50
G RR+ C R RR+ R+ RRRK +CR RR RR RK+ C R
Sbjct: 49 GQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRRSCRHRRRHRRGCRTRKRTCRR 101
>gi|239756477 PREDICTED: similar to predicted protein [Homo
sapiens]
Length = 291
Score = 34.7 bits (78), Expect = 0.072
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 12 RRQRCQSRGRRRPRAPRRRKAPACRRRRARRRRKKPCP--RSLRPEIHECP------KSQ 63
RR R Q R R+++ C RR RR+R+ CP R R CP + +
Sbjct: 15 RRHRKQREDTCPMRRHRKQREDTCPVRRHRRQREDTCPVRRHWRQREDTCPVRRHWRQRE 74
Query: 64 DPCASRDDWR 73
D C R WR
Sbjct: 75 DTCPLRRHWR 84
Score = 28.1 bits (61), Expect = 6.8
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 29 RRKAPACRRRRARRRRKKPCP--RSLRPEIHECP------KSQDPCASRDDWR 73
R++ C RR R+R+ CP R R CP + +D C R WR
Sbjct: 123 RQREDTCPMRRHWRQREDTCPLRRHWRQREDTCPLRRHWRQREDTCPLRRHWR 175
Score = 27.7 bits (60), Expect = 8.9
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 29 RRKAPACRRRRARRRRKKPCP--RSLRPEIHECP------KSQDPCASRDDWR 73
R++ C RR R+R+ CP R R CP + +D C R WR
Sbjct: 71 RQREDTCPLRRHWRQREDTCPLRRHWRQREDTCPLRRHWRQREDTCPLRRHWR 123
Score = 27.7 bits (60), Expect = 8.9
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 29 RRKAPACRRRRARRRRKKPCP--RSLRPEIHECP------KSQDPCASRDDWR 73
R++ C RR R+R+ CP R R CP + +D C R WR
Sbjct: 110 RQREDTCPLRRHWRQREDTCPMRRHWRQREDTCPLRRHWRQREDTCPLRRHWR 162
>gi|169218320 PREDICTED: similar to BCL2-associated transcription
factor 1 isoform 2 [Homo sapiens]
Length = 869
Score = 34.7 bits (78), Expect = 0.072
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 11 RRRQRCQSRGRRRPRAPRRRKAPACRRRRARRR--RKKPCPRSLRPEIHECPKSQDPCAS 68
RR R RGR R R+P+RR + R R RR R PRS P S+ P +
Sbjct: 97 RRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSR-SSSPYSKSPVSK 155
Query: 69 R 69
R
Sbjct: 156 R 156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,448,941
Number of Sequences: 37866
Number of extensions: 504594
Number of successful extensions: 3638
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 2743
Number of HSP's gapped (non-prelim): 707
length of query: 234
length of database: 18,247,518
effective HSP length: 99
effective length of query: 135
effective length of database: 14,498,784
effective search space: 1957335840
effective search space used: 1957335840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.