Guide to the Human Genome
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Name: C4orf35 Sequence: fasta or formatted (395aa) NCBI GI: 90652863
Description:

testis development protein NYD-SP26

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         28           2
 C cysteine            0.0          0           0
 D aspartate           9.9         39           2
 E glutamate          12.2         48           3
 F phenylalanine       3.5         14           2
 G glycine             2.8         11           1
 H histidine           1.3          5           1
 I isoleucine          7.3         29           1
 K lysine              6.1         24           2
 L leucine             6.1         24           2
 M methionine          1.8          7           1
 N asparagine          2.8         11           1
 P proline             5.1         20           2
 Q glutamine           0.5          2           1
 R arginine            1.3          5           1
 S serine             10.6         42           2
 T threonine          15.2         60           3
 V valine              5.1         20           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   testis development protein NYD-SP26 
LOC100294249          0.050   PREDICTED: hypothetical protein XP_002344067 
LOC729792             0.049   PREDICTED: hypothetical protein 
LOC729792             0.049   PREDICTED: hypothetical protein 
LOC729792             0.049   PREDICTED: hypothetical protein 
LOC100294501          0.049   PREDICTED: hypothetical protein 
LOC100294238          0.049   PREDICTED: hypothetical protein 
LOC100294204          0.049   PREDICTED: hypothetical protein 
LOC100294136          0.049   PREDICTED: hypothetical protein 
LOC100294091          0.049   PREDICTED: hypothetical protein 
LOC730401             0.049   PREDICTED: hypothetical protein 
MUC16                 0.036   mucin 16 
MUC3A                 0.035   PREDICTED: mucin 3A, intestinal 
LOC100133790          0.034   PREDICTED: intestinal mucin-like, partial 
LOC100131514          0.032   PREDICTED: similar to hCG1747327, partial 
ZAN                   0.032   zonadhesin isoform 3 
ZAN                   0.032   zonadhesin isoform 6 
MUC17                 0.026   mucin 17 
FSCB                  0.024   fibrous sheath CABYR binding protein 
LOC100134138          0.024   PREDICTED: similar to mucin, partial 
MUC3A                 0.023   PREDICTED: mucin 3A, cell surface associated, parti...
MAP2                  0.019   microtubule-associated protein 2 isoform 1 
LOC100133408          0.019   PREDICTED: similar to mucin 
MUC21                 0.019   mucin 21 
TTN                   0.018   titin isoform N2-A 
TOPORS                0.018   topoisomerase I binding, arginine/serine-rich 
ASXL3                 0.018   additional sex combs like 3 
LOC732156             0.016   PREDICTED: similar to Mucin-3A 
BOD1L                 0.016   biorientation of chromosomes in cell division 1-like...
PCDHGA5               0.016   protocadherin gamma subfamily A, 5 isoform 2 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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